Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:52:57 (84748): wrapper (7.7.26015): starting
06:52:57 (84748): wrapper: running run_atlas (--nthreads 2)
[2026-04-14 06:52:57] Arguments: --nthreads 2
[2026-04-14 06:52:57] Threads: 2
[2026-04-14 06:52:57] Checking for CVMFS
[2026-04-14 06:52:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 06:53:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 06:53:00] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 06:53:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 06:53:00] 2.9.2.0 3627210 6335 59972 158440 2 49 30977922 36864000 0 130560 0 2620935 99.984 238122 12069 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-14 06:53:00] CVMFS is ok
[2026-04-14 06:53:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 06:53:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 06:53:00] Further information can be found at the LHC@home message board.
[2026-04-14 06:53:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 06:53:00] Checking for apptainer binary...
[2026-04-14 06:53:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 06:53:00] Running /usr/bin/apptainer --version
[2026-04-14 06:53:00] apptainer version 1.4.1-1.1
[2026-04-14 06:53:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 06:53:00] madmaxA277a
[2026-04-14 06:53:00] apptainer works
[2026-04-14 06:53:00] Set ATHENA_PROC_NUMBER=2
[2026-04-14 06:53:00] Set ATHENA_CORE_NUMBER=2
[2026-04-14 06:53:00] Starting ATLAS job with PandaID=7089567269
[2026-04-14 06:53:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 08:59:42]  *** The last 200 lines of the pilot log: ***
[2026-04-14 08:59:42] 2026-04-14 06:59:23,864 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-14 08:59:42] 2026-04-14 06:59:23,864 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 08:59:42] 2026-04-14 06:59:23,864 | INFO     | job 7089567269 has completed (purged errors)
[2026-04-14 08:59:42] 2026-04-14 06:59:23,864 | INFO     | overall cleanup function is called
[2026-04-14 08:59:42] 2026-04-14 06:59:24,870 | INFO     | --- collectZombieJob: --- 10, [93181]
[2026-04-14 08:59:42] 2026-04-14 06:59:24,870 | INFO     | zombie collector waiting for pid 93181
[2026-04-14 08:59:42] 2026-04-14 06:59:24,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 08:59:42] 2026-04-14 06:59:24,871 | INFO     | collected zombie processes
[2026-04-14 08:59:42] 2026-04-14 06:59:24,871 | INFO     | will attempt to kill all subprocesses of pid=93181
[2026-04-14 08:59:42] 2026-04-14 06:59:24,901 | INFO     | process IDs to be killed: [93181] (in reverse order)
[2026-04-14 08:59:42] 2026-04-14 06:59:24,922 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 08:59:42] 2026-04-14 06:59:24,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 08:59:42] 2026-04-14 06:59:24,923 | INFO     | did not find any defunct processes belonging to 93181
[2026-04-14 08:59:42] 2026-04-14 06:59:24,923 | INFO     | did not find any defunct processes belonging to 93181
[2026-04-14 08:59:42] 2026-04-14 06:59:24,923 | INFO     | Ready for new job
[2026-04-14 08:59:42] 2026-04-14 06:59:24,924 | INFO     | **************************************
[2026-04-14 08:59:42] 2026-04-14 06:59:24,924 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 08:59:42] 2026-04-14 06:59:24,924 | INFO     | **************************************
[2026-04-14 08:59:42] 2026-04-14 06:59:24,924 | INFO     | 
[2026-04-14 08:59:42] 2026-04-14 06:59:24,924 | INFO     | architecture information:
[2026-04-14 08:59:42] 2026-04-14 06:59:24,924 | INFO     | executing command: cat /etc/os-release
[2026-04-14 08:59:42] 2026-04-14 06:59:24,933 | INFO     | cat /etc/os-release:
[2026-04-14 08:59:42] NAME="CentOS Linux"
[2026-04-14 08:59:42] VERSION="7 (Core)"
[2026-04-14 08:59:42] ID="centos"
[2026-04-14 08:59:42] ID_LIKE="rhel fedora"
[2026-04-14 08:59:42] VERSION_ID="7"
[2026-04-14 08:59:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 08:59:42] ANSI_COLOR="0;31"
[2026-04-14 08:59:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 08:59:42] HOME_URL="https://www.centos.org/"
[2026-04-14 08:59:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 08:59:42] 
[2026-04-14 08:59:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 08:59:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 08:59:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 08:59:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 08:59:42] 
[2026-04-14 08:59:42] 2026-04-14 06:59:24,933 | INFO     | **************************************
[2026-04-14 08:59:42] 2026-04-14 06:59:25,437 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 08:59:42] 2026-04-14 06:59:25,448 | INFO     | sufficient remaining disk space (487258587136 B)
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | INFO     | update_server=False
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 08:59:42] 2026-04-14 06:59:25,449 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 08:59:42] 2026-04-14 06:59:25,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 08:59:42] 2026-04-14 06:59:25,516 | INFO     | aborting loop
[2026-04-14 08:59:42] 2026-04-14 06:59:25,847 | INFO     | all job control threads have been joined
[2026-04-14 08:59:42] 2026-04-14 06:59:25,855 | INFO     | all data control threads have been joined
[2026-04-14 08:59:42] 2026-04-14 06:59:26,250 | INFO     | all payload control threads have been joined
[2026-04-14 08:59:42] 2026-04-14 06:59:26,378 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 08:59:42] 2026-04-14 06:59:26,454 | INFO     | [job] retrieve thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:26,455 | INFO     | [job] queue monitor thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:26,522 | INFO     | [job] job monitor thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:26,568 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:26,853 | INFO     | [job] control thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:26,860 | INFO     | [data] control thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:27,014 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:27,026 | INFO     | [job] validate thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:27,098 | INFO     | [payload] validate_post thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:27,256 | INFO     | [payload] control thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:27,339 | INFO     | [data] copytool_in thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:27,368 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:27,656 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 08:59:42] 2026-04-14 06:59:27,694 | INFO     | [payload] failed_post thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:28,384 | INFO     | [data] copytool_out thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:31,663 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:34,307 | INFO     | [monitor] cgroup control has ended
[2026-04-14 08:59:42] 2026-04-14 06:59:35,710 | INFO     | job.realtimelogging is not enabled
[2026-04-14 08:59:42] 2026-04-14 06:59:36,716 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 08:59:42] 2026-04-14 06:59:36,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208308717376)>', '<ExcThread(monitor, started 140207445759744)>']
[2026-04-14 08:59:42] 2026-04-14 06:59:37,511 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 08:59:42] 2026-04-14 06:59:37,511 | INFO     | [monitor] control thread has ended
[2026-04-14 08:59:42] 2026-04-14 06:59:41,892 | INFO     | all workflow threads have been joined
[2026-04-14 08:59:42] 2026-04-14 06:59:41,892 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 08:59:42] 2026-04-14 06:59:41,892 | INFO     | traces error code: 0
[2026-04-14 08:59:42] 2026-04-14 06:59:41,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 08:59:42] 2026-04-14 06:59:41,968 [wrapper] ==== pilot stdout END ====
[2026-04-14 08:59:42] 2026-04-14 06:59:41,971 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 08:59:42] 2026-04-14 06:59:41,973 [wrapper] pilotpid: 88772
[2026-04-14 08:59:42] 2026-04-14 06:59:41,976 [wrapper] Pilot exit status: 0
[2026-04-14 08:59:42] 2026-04-14 06:59:41,982 [wrapper] pandaids: 7089567269
[2026-04-14 08:59:42] 2026-04-14 06:59:41,995 [wrapper] cleanup supervisor_pilot   98166 88773
[2026-04-14 08:59:42] 2026-04-14 06:59:41,998 [wrapper] Test setup, not cleaning
[2026-04-14 08:59:42] 2026-04-14 06:59:42,000 [wrapper] apfmon messages muted
[2026-04-14 08:59:42] 2026-04-14 06:59:42,002 [wrapper] ==== wrapper stdout END ====
[2026-04-14 08:59:42] 2026-04-14 06:59:42,004 [wrapper] ==== wrapper stderr END ====
[2026-04-14 08:59:42]  *** Error codes and diagnostics ***
[2026-04-14 08:59:42]     "exeErrorCode": 0,
[2026-04-14 08:59:42]     "pilotErrorCode": 0,
[2026-04-14 08:59:42]  *** Listing of results directory ***
[2026-04-14 08:59:42] total 416716
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc    644190 Apr 13 16:51 pilot3.tar.gz
[2026-04-14 08:59:42] -rwx------ 1 boinc boinc     36322 Apr 13 16:51 runpilot2-wrapper.sh
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc      5094 Apr 13 16:52 queuedata.json
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc       100 Apr 14 06:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 08:59:42] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 06:52 run_atlas
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc       105 Apr 14 06:52 job.xml
[2026-04-14 08:59:42] -rw-r--r-- 2 boinc boinc 223907994 Apr 14 06:52 EVNT.49263198._001850.pool.root.1
[2026-04-14 08:59:42] -rw-r--r-- 2 boinc boinc    656928 Apr 14 06:52 input.tar.gz
[2026-04-14 08:59:42] -rw-r--r-- 2 boinc boinc     15665 Apr 14 06:52 start_atlas.sh
[2026-04-14 08:59:42] drwxrwx--x 2 boinc boinc      4096 Apr 14 06:52 shared
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc         0 Apr 14 06:52 boinc_setup_complete
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc      6125 Apr 14 06:52 init_data.xml
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc         0 Apr 14 06:52 boinc_lockfile
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc      2576 Apr 14 06:53 pandaJob.out
[2026-04-14 08:59:42] -rw------- 1 boinc boinc    997520 Apr 14 06:53 agis_schedconf.cvmfs.json
[2026-04-14 08:59:42] -rw------- 1 boinc boinc   1511579 Apr 14 06:53 agis_ddmendpoints.agis.ALL.json
[2026-04-14 08:59:42] -rw------- 1 boinc boinc       424 Apr 14 06:53 workernode_map.json
[2026-04-14 08:59:42] drwx------ 5 boinc boinc      4096 Apr 14 06:53 pilot3
[2026-04-14 08:59:42] -rw------- 1 boinc boinc        95 Apr 14 08:58 pilot_heartbeat.json
[2026-04-14 08:59:42] -rw------- 1 boinc boinc 196847239 Apr 14 08:58 HITS.49263200._064642.pool.root.1
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc       487 Apr 14 08:59 boinc_task_state.xml
[2026-04-14 08:59:42] -rw------- 1 boinc boinc      1016 Apr 14 08:59 memory_monitor_summary.json
[2026-04-14 08:59:42] -rw------- 1 boinc boinc    234135 Apr 14 08:59 log.49263200._064642.job.log.tgz.1
[2026-04-14 08:59:42] -rw------- 1 boinc boinc      6328 Apr 14 08:59 heartbeat_new.json
[2026-04-14 08:59:42] -rw------- 1 boinc boinc      6219 Apr 14 08:59 heartbeat.json
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc      8192 Apr 14 08:59 boinc_mmap_file
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc        27 Apr 14 08:59 wrapper_checkpoint.txt
[2026-04-14 08:59:42] -rw------- 1 boinc boinc      4623 Apr 14 08:59 pilotlog.txt
[2026-04-14 08:59:42] -rw------- 1 boinc boinc    720357 Apr 14 08:59 log.49263200._064642.job.log.1
[2026-04-14 08:59:42] -rw------- 1 boinc boinc       357 Apr 14 08:59 output.list
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc       410 Apr 14 08:59 runtime_log
[2026-04-14 08:59:42] -rw------- 1 boinc boinc    972800 Apr 14 08:59 result.tar.gz
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc      8543 Apr 14 08:59 runtime_log.err
[2026-04-14 08:59:42] -rw------- 1 boinc boinc       663 Apr 14 08:59 02ec03031111.diag
[2026-04-14 08:59:42] -rw-r--r-- 1 boinc boinc     10797 Apr 14 08:59 stderr.txt
[2026-04-14 08:59:42] HITS file was successfully produced:
[2026-04-14 08:59:42] -rw------- 1 boinc boinc 196847239 Apr 14 08:58 shared/HITS.pool.root.1
[2026-04-14 08:59:42]  *** Contents of shared directory: ***
[2026-04-14 08:59:42] total 412520
[2026-04-14 08:59:42] -rw-r--r-- 2 boinc boinc 223907994 Apr 14 06:52 ATLAS.root_0
[2026-04-14 08:59:42] -rw-r--r-- 2 boinc boinc    656928 Apr 14 06:52 input.tar.gz
[2026-04-14 08:59:42] -rw-r--r-- 2 boinc boinc     15665 Apr 14 06:52 start_atlas.sh
[2026-04-14 08:59:42] -rw------- 1 boinc boinc 196847239 Apr 14 08:58 HITS.pool.root.1
[2026-04-14 08:59:42] -rw------- 1 boinc boinc    972800 Apr 14 08:59 result.tar.gz
08:59:43 (84748): run_atlas exited; CPU time 14507.898381
08:59:43 (84748): called boinc_finish(0)

</stderr_txt>
]]>

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