Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:13:37 (1019763): wrapper (7.7.26015): starting
07:13:37 (1019763): wrapper: running run_atlas (--nthreads 3)
[2026-04-14 07:13:37] Arguments: --nthreads 3
[2026-04-14 07:13:37] Threads: 3
[2026-04-14 07:13:37] Checking for CVMFS
[2026-04-14 07:13:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 07:13:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 07:13:38] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 07:13:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 07:13:38] 2.9.2.0 129776 6320 67928 158440 2 50 25718859 36864001 0 130560 0 3478892 99.987 239434 13332 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-14 07:13:38] CVMFS is ok
[2026-04-14 07:13:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 07:13:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 07:13:38] Further information can be found at the LHC@home message board.
[2026-04-14 07:13:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 07:13:38] Checking for apptainer binary...
[2026-04-14 07:13:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 07:13:38] Running /usr/bin/apptainer --version
[2026-04-14 07:13:38] apptainer version 1.4.1-1.1
[2026-04-14 07:13:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 07:13:38] thA335
[2026-04-14 07:13:38] apptainer works
[2026-04-14 07:13:38] Set ATHENA_PROC_NUMBER=3
[2026-04-14 07:13:38] Set ATHENA_CORE_NUMBER=3
[2026-04-14 07:13:38] Starting ATLAS job with PandaID=7089566450
[2026-04-14 07:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 08:49:10]  *** The last 200 lines of the pilot log: ***
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,870 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,871 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-14 08:49:10] 2026-04-14 06:48:08,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,871 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 08:49:10] 2026-04-14 06:48:08,871 | INFO     | job 7089566450 has completed (purged errors)
[2026-04-14 08:49:10] 2026-04-14 06:48:08,871 | INFO     | overall cleanup function is called
[2026-04-14 08:49:10] 2026-04-14 06:48:09,877 | INFO     | --- collectZombieJob: --- 10, [1028242]
[2026-04-14 08:49:10] 2026-04-14 06:48:09,877 | INFO     | zombie collector waiting for pid 1028242
[2026-04-14 08:49:10] 2026-04-14 06:48:09,878 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 08:49:10] 2026-04-14 06:48:09,878 | INFO     | collected zombie processes
[2026-04-14 08:49:10] 2026-04-14 06:48:09,878 | INFO     | will attempt to kill all subprocesses of pid=1028242
[2026-04-14 08:49:10] 2026-04-14 06:48:09,958 | INFO     | process IDs to be killed: [1028242] (in reverse order)
[2026-04-14 08:49:10] 2026-04-14 06:48:09,987 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 08:49:10] 2026-04-14 06:48:09,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 08:49:10] 2026-04-14 06:48:09,989 | INFO     | did not find any defunct processes belonging to 1028242
[2026-04-14 08:49:10] 2026-04-14 06:48:09,990 | INFO     | did not find any defunct processes belonging to 1028242
[2026-04-14 08:49:10] 2026-04-14 06:48:09,990 | INFO     | Ready for new job
[2026-04-14 08:49:10] 2026-04-14 06:48:09,990 | INFO     | **************************************
[2026-04-14 08:49:10] 2026-04-14 06:48:09,990 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 08:49:10] 2026-04-14 06:48:09,990 | INFO     | **************************************
[2026-04-14 08:49:10] 2026-04-14 06:48:09,990 | INFO     | 
[2026-04-14 08:49:10] 2026-04-14 06:48:09,991 | INFO     | architecture information:
[2026-04-14 08:49:10] 2026-04-14 06:48:09,991 | INFO     | executing command: cat /etc/os-release
[2026-04-14 08:49:10] 2026-04-14 06:48:10,002 | INFO     | cat /etc/os-release:
[2026-04-14 08:49:10] NAME="CentOS Linux"
[2026-04-14 08:49:10] VERSION="7 (Core)"
[2026-04-14 08:49:10] ID="centos"
[2026-04-14 08:49:10] ID_LIKE="rhel fedora"
[2026-04-14 08:49:10] VERSION_ID="7"
[2026-04-14 08:49:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 08:49:10] ANSI_COLOR="0;31"
[2026-04-14 08:49:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 08:49:10] HOME_URL="https://www.centos.org/"
[2026-04-14 08:49:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 08:49:10] 
[2026-04-14 08:49:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 08:49:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 08:49:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 08:49:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 08:49:10] 
[2026-04-14 08:49:10] 2026-04-14 06:48:10,002 | INFO     | **************************************
[2026-04-14 08:49:10] 2026-04-14 06:48:10,505 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 08:49:10] 2026-04-14 06:48:10,519 | INFO     | sufficient remaining disk space (835613360128 B)
[2026-04-14 08:49:10] 2026-04-14 06:48:10,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 08:49:10] 2026-04-14 06:48:10,519 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 08:49:10] 2026-04-14 06:48:10,519 | INFO     | update_server=False
[2026-04-14 08:49:10] 2026-04-14 06:48:10,519 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 08:49:10] 2026-04-14 06:48:10,519 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-14 08:49:10] 2026-04-14 06:48:10,519 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 08:49:10] 2026-04-14 06:48:10,520 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 08:49:10] 2026-04-14 06:48:10,520 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 08:49:10] 2026-04-14 06:48:10,520 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 08:49:10] 2026-04-14 06:48:10,520 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 08:49:10] 2026-04-14 06:48:10,520 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 08:49:10] 2026-04-14 06:48:10,520 | INFO     | aborting loop
[2026-04-14 08:49:10] 2026-04-14 06:48:10,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 08:49:10] 2026-04-14 06:48:11,024 | INFO     | all job control threads have been joined
[2026-04-14 08:49:10] 2026-04-14 06:48:11,290 | INFO     | all data control threads have been joined
[2026-04-14 08:49:10] 2026-04-14 06:48:11,525 | INFO     | [job] retrieve thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:11,526 | INFO     | [job] job monitor thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:11,526 | INFO     | [job] queue monitor thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:11,565 | INFO     | [payload] failed_post thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:11,709 | INFO     | all payload control threads have been joined
[2026-04-14 08:49:10] 2026-04-14 06:48:11,849 | INFO     | [job] validate thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,031 | INFO     | [job] control thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,043 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,120 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,184 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,219 | INFO     | [data] copytool_in thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,296 | INFO     | [data] control thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,513 | INFO     | [payload] validate_post thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,661 | INFO     | [data] copytool_out thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:12,715 | INFO     | [payload] control thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:14,527 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:48:20,745 | INFO     | job.realtimelogging is not enabled
[2026-04-14 08:49:10] 2026-04-14 06:48:21,751 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 08:49:10] 2026-04-14 06:49:03,553 | INFO     | [monitor] cgroup control has ended
[2026-04-14 08:49:10] 2026-04-14 06:49:04,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140248123316032)>', '<ExcThread(monitor, started 140247627183872)>']
[2026-04-14 08:49:10] 2026-04-14 06:49:05,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 08:49:10] 2026-04-14 06:49:05,808 | INFO     | [monitor] control thread has ended
[2026-04-14 08:49:10] 2026-04-14 06:49:10,020 | INFO     | all workflow threads have been joined
[2026-04-14 08:49:10] 2026-04-14 06:49:10,020 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 08:49:10] 2026-04-14 06:49:10,021 | INFO     | traces error code: 0
[2026-04-14 08:49:10] 2026-04-14 06:49:10,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 08:49:10] 2026-04-14 06:49:10,070 [wrapper] ==== pilot stdout END ====
[2026-04-14 08:49:10] 2026-04-14 06:49:10,073 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 08:49:10] 2026-04-14 06:49:10,077 [wrapper] pilotpid: 1023820
[2026-04-14 08:49:10] 2026-04-14 06:49:10,080 [wrapper] Pilot exit status: 0
[2026-04-14 08:49:10] 2026-04-14 06:49:10,087 [wrapper] pandaids: 7089566450
[2026-04-14 08:49:10] 2026-04-14 06:49:10,105 [wrapper] cleanup supervisor_pilot 1033795 1023821
[2026-04-14 08:49:10] 2026-04-14 06:49:10,108 [wrapper] Test setup, not cleaning
[2026-04-14 08:49:10] 2026-04-14 06:49:10,111 [wrapper] apfmon messages muted
[2026-04-14 08:49:10] 2026-04-14 06:49:10,114 [wrapper] ==== wrapper stdout END ====
[2026-04-14 08:49:10] 2026-04-14 06:49:10,116 [wrapper] ==== wrapper stderr END ====
[2026-04-14 08:49:10]  *** Error codes and diagnostics ***
[2026-04-14 08:49:10]     "exeErrorCode": 0,
[2026-04-14 08:49:10]     "pilotErrorCode": 0,
[2026-04-14 08:49:10]  *** Listing of results directory ***
[2026-04-14 08:49:10] total 414856
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc      5094 Apr 13 16:51 queuedata.json
[2026-04-14 08:49:10] -rwx------ 1 boinc boinc     36322 Apr 13 16:51 runpilot2-wrapper.sh
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc    644190 Apr 13 16:51 pilot3.tar.gz
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc       100 Apr 14 07:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 08:49:10] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 07:13 run_atlas
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc       105 Apr 14 07:13 job.xml
[2026-04-14 08:49:10] -rw-r--r-- 2 boinc boinc 226268832 Apr 14 07:13 EVNT.49263198._001836.pool.root.1
[2026-04-14 08:49:10] -rw-r--r-- 2 boinc boinc    656916 Apr 14 07:13 input.tar.gz
[2026-04-14 08:49:10] -rw-r--r-- 2 boinc boinc     15665 Apr 14 07:13 start_atlas.sh
[2026-04-14 08:49:10] drwxrwx--x 2 boinc boinc      4096 Apr 14 07:13 shared
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc         0 Apr 14 07:13 boinc_setup_complete
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc      6111 Apr 14 07:13 init_data.xml
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc         0 Apr 14 07:13 boinc_lockfile
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc      2576 Apr 14 07:13 pandaJob.out
[2026-04-14 08:49:10] -rw------- 1 boinc boinc    997520 Apr 14 07:13 agis_schedconf.cvmfs.json
[2026-04-14 08:49:10] -rw------- 1 boinc boinc   1511579 Apr 14 07:13 agis_ddmendpoints.agis.ALL.json
[2026-04-14 08:49:10] -rw------- 1 boinc boinc       426 Apr 14 07:13 workernode_map.json
[2026-04-14 08:49:10] drwx------ 5 boinc boinc      4096 Apr 14 07:13 pilot3
[2026-04-14 08:49:10] -rw------- 1 boinc boinc        95 Apr 14 08:47 pilot_heartbeat.json
[2026-04-14 08:49:10] -rw------- 1 boinc boinc 192913264 Apr 14 08:47 HITS.49263200._064302.pool.root.1
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc       487 Apr 14 08:47 boinc_task_state.xml
[2026-04-14 08:49:10] -rw------- 1 boinc boinc      1027 Apr 14 08:48 memory_monitor_summary.json
[2026-04-14 08:49:10] -rw------- 1 boinc boinc    244620 Apr 14 08:48 log.49263200._064302.job.log.tgz.1
[2026-04-14 08:49:10] -rw------- 1 boinc boinc      6324 Apr 14 08:48 heartbeat_new.json
[2026-04-14 08:49:10] -rw------- 1 boinc boinc      6215 Apr 14 08:48 heartbeat.json
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc      8192 Apr 14 08:49 boinc_mmap_file
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc        27 Apr 14 08:49 wrapper_checkpoint.txt
[2026-04-14 08:49:10] -rw------- 1 boinc boinc      4623 Apr 14 08:49 pilotlog.txt
[2026-04-14 08:49:10] -rw------- 1 boinc boinc    547157 Apr 14 08:49 log.49263200._064302.job.log.1
[2026-04-14 08:49:10] -rw------- 1 boinc boinc       357 Apr 14 08:49 output.list
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc       410 Apr 14 08:49 runtime_log
[2026-04-14 08:49:10] -rw------- 1 boinc boinc    808960 Apr 14 08:49 result.tar.gz
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc      8518 Apr 14 08:49 runtime_log.err
[2026-04-14 08:49:10] -rw------- 1 boinc boinc       657 Apr 14 08:49 02e3f7ba1dd4.diag
[2026-04-14 08:49:10] -rw-r--r-- 1 boinc boinc     12343 Apr 14 08:49 stderr.txt
[2026-04-14 08:49:10] HITS file was successfully produced:
[2026-04-14 08:49:10] -rw------- 1 boinc boinc 192913264 Apr 14 08:47 shared/HITS.pool.root.1
[2026-04-14 08:49:10]  *** Contents of shared directory: ***
[2026-04-14 08:49:10] total 410816
[2026-04-14 08:49:10] -rw-r--r-- 2 boinc boinc 226268832 Apr 14 07:13 ATLAS.root_0
[2026-04-14 08:49:10] -rw-r--r-- 2 boinc boinc    656916 Apr 14 07:13 input.tar.gz
[2026-04-14 08:49:10] -rw-r--r-- 2 boinc boinc     15665 Apr 14 07:13 start_atlas.sh
[2026-04-14 08:49:10] -rw------- 1 boinc boinc 192913264 Apr 14 08:47 HITS.pool.root.1
[2026-04-14 08:49:10] -rw------- 1 boinc boinc    808960 Apr 14 08:49 result.tar.gz
08:49:11 (1019763): run_atlas exited; CPU time 15956.194632
08:49:11 (1019763): called boinc_finish(0)

</stderr_txt>
]]>

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