Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:33:00 (2924326): wrapper (7.7.26015): starting
06:33:00 (2924326): wrapper: running run_atlas (--nthreads 3)
[2026-04-14 06:33:00] Arguments: --nthreads 3
[2026-04-14 06:33:00] Threads: 3
[2026-04-14 06:33:00] Checking for CVMFS
[2026-04-14 06:33:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 06:33:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 06:33:01] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 06:33:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 06:33:01] 2.9.2.0 2104384 5202 83816 158440 2 50 25672870 36864000 0 130560 0 3133800 99.989 196240 13469 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-14 06:33:01] CVMFS is ok
[2026-04-14 06:33:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 06:33:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 06:33:01] Further information can be found at the LHC@home message board.
[2026-04-14 06:33:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 06:33:01] Checking for apptainer binary...
[2026-04-14 06:33:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 06:33:01] Running /usr/bin/apptainer --version
[2026-04-14 06:33:01] apptainer version 1.4.1-1.1
[2026-04-14 06:33:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 06:33:01] thA385
[2026-04-14 06:33:01] apptainer works
[2026-04-14 06:33:01] Set ATHENA_PROC_NUMBER=3
[2026-04-14 06:33:01] Set ATHENA_CORE_NUMBER=3
[2026-04-14 06:33:01] Starting ATLAS job with PandaID=7089543946
[2026-04-14 06:33:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 08:15:37]  *** The last 200 lines of the pilot log: ***
[2026-04-14 08:15:37] 2026-04-14 06:15:06,255 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-14 08:15:37] 2026-04-14 06:15:06,255 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-14 08:15:37] 2026-04-14 06:15:06,255 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-14 08:15:37] 2026-04-14 06:15:06,255 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-14 08:15:37] 2026-04-14 06:15:06,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-14 08:15:37] 2026-04-14 06:15:06,256 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 08:15:37] 2026-04-14 06:15:06,256 | INFO     | job 7089543946 has completed (purged errors)
[2026-04-14 08:15:37] 2026-04-14 06:15:06,256 | INFO     | overall cleanup function is called
[2026-04-14 08:15:37] 2026-04-14 06:15:07,262 | INFO     | --- collectZombieJob: --- 10, [2932796]
[2026-04-14 08:15:37] 2026-04-14 06:15:07,262 | INFO     | zombie collector waiting for pid 2932796
[2026-04-14 08:15:37] 2026-04-14 06:15:07,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 08:15:37] 2026-04-14 06:15:07,263 | INFO     | collected zombie processes
[2026-04-14 08:15:37] 2026-04-14 06:15:07,263 | INFO     | will attempt to kill all subprocesses of pid=2932796
[2026-04-14 08:15:37] 2026-04-14 06:15:07,309 | INFO     | process IDs to be killed: [2932796] (in reverse order)
[2026-04-14 08:15:37] 2026-04-14 06:15:07,335 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 08:15:37] 2026-04-14 06:15:07,335 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 08:15:37] 2026-04-14 06:15:07,336 | INFO     | did not find any defunct processes belonging to 2932796
[2026-04-14 08:15:37] 2026-04-14 06:15:07,337 | INFO     | did not find any defunct processes belonging to 2932796
[2026-04-14 08:15:37] 2026-04-14 06:15:07,338 | INFO     | Ready for new job
[2026-04-14 08:15:37] 2026-04-14 06:15:07,338 | INFO     | **************************************
[2026-04-14 08:15:37] 2026-04-14 06:15:07,338 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 08:15:37] 2026-04-14 06:15:07,338 | INFO     | **************************************
[2026-04-14 08:15:37] 2026-04-14 06:15:07,338 | INFO     | 
[2026-04-14 08:15:37] 2026-04-14 06:15:07,339 | INFO     | architecture information:
[2026-04-14 08:15:37] 2026-04-14 06:15:07,339 | INFO     | executing command: cat /etc/os-release
[2026-04-14 08:15:37] 2026-04-14 06:15:07,349 | INFO     | cat /etc/os-release:
[2026-04-14 08:15:37] NAME="CentOS Linux"
[2026-04-14 08:15:37] VERSION="7 (Core)"
[2026-04-14 08:15:37] ID="centos"
[2026-04-14 08:15:37] ID_LIKE="rhel fedora"
[2026-04-14 08:15:37] VERSION_ID="7"
[2026-04-14 08:15:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 08:15:37] ANSI_COLOR="0;31"
[2026-04-14 08:15:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 08:15:37] HOME_URL="https://www.centos.org/"
[2026-04-14 08:15:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 08:15:37] 
[2026-04-14 08:15:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 08:15:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 08:15:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 08:15:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 08:15:37] 
[2026-04-14 08:15:37] 2026-04-14 06:15:07,349 | INFO     | **************************************
[2026-04-14 08:15:37] 2026-04-14 06:15:07,852 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 08:15:37] 2026-04-14 06:15:07,865 | INFO     | sufficient remaining disk space (378900840448 B)
[2026-04-14 08:15:37] 2026-04-14 06:15:07,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 08:15:37] 2026-04-14 06:15:07,865 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 08:15:37] 2026-04-14 06:15:07,865 | INFO     | update_server=False
[2026-04-14 08:15:37] 2026-04-14 06:15:07,865 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 08:15:37] 2026-04-14 06:15:07,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 08:15:37] 2026-04-14 06:15:08,126 | INFO     | all payload control threads have been joined
[2026-04-14 08:15:37] 2026-04-14 06:15:08,280 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-14 08:15:37] 2026-04-14 06:15:08,280 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-14 08:15:37] 2026-04-14 06:15:08,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 08:15:37] 2026-04-14 06:15:08,280 | INFO     | will abort loop
[2026-04-14 08:15:37] 2026-04-14 06:15:08,870 | INFO     | [job] retrieve thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:08,937 | INFO     | all data control threads have been joined
[2026-04-14 08:15:37] 2026-04-14 06:15:09,132 | INFO     | [payload] control thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:09,286 | INFO     | [job] job monitor thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:09,316 | INFO     | [payload] failed_post thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:09,459 | INFO     | all job control threads have been joined
[2026-04-14 08:15:37] 2026-04-14 06:15:09,523 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:09,769 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:09,787 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:09,835 | INFO     | [job] validate thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:09,870 | INFO     | [data] copytool_out thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:09,942 | INFO     | [data] control thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:10,042 | INFO     | [data] copytool_in thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:10,093 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 08:15:37] 2026-04-14 06:15:10,104 | INFO     | [payload] validate_post thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:10,465 | INFO     | [job] control thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:10,805 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 08:15:37] 2026-04-14 06:15:11,811 | INFO     | [job] queue monitor thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:14,100 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:18,845 | INFO     | job.realtimelogging is not enabled
[2026-04-14 08:15:37] 2026-04-14 06:15:19,829 | INFO     | [monitor] cgroup control has ended
[2026-04-14 08:15:37] 2026-04-14 06:15:19,850 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 08:15:37] 2026-04-14 06:15:20,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239340197696)>', '<ExcThread(monitor, started 140238844315392)>']
[2026-04-14 08:15:37] 2026-04-14 06:15:25,128 | INFO     | all workflow threads have been joined
[2026-04-14 08:15:37] 2026-04-14 06:15:25,128 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 08:15:37] 2026-04-14 06:15:25,128 | INFO     | traces error code: 0
[2026-04-14 08:15:37] 2026-04-14 06:15:25,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 08:15:37] 2026-04-14 06:15:37,642 | INFO     | PID=2928367 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-14 08:15:37] 2026-04-14 06:15:37,642 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 08:15:37] 2026-04-14 06:15:37,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 08:15:37] 2026-04-14 06:15:37,642 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 08:15:37] 2026-04-14 06:15:37,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 08:15:37] 2026-04-14 06:15:37,642 | INFO     | [monitor] control thread has ended
[2026-04-14 08:15:37] 2026-04-14 06:15:37,692 [wrapper] ==== pilot stdout END ====
[2026-04-14 08:15:37] 2026-04-14 06:15:37,694 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 08:15:37] 2026-04-14 06:15:37,697 [wrapper] pilotpid: 2928367
[2026-04-14 08:15:37] 2026-04-14 06:15:37,699 [wrapper] Pilot exit status: 0
[2026-04-14 08:15:37] 2026-04-14 06:15:37,707 [wrapper] pandaids: 7089543946
[2026-04-14 08:15:37] 2026-04-14 06:15:37,724 [wrapper] cleanup supervisor_pilot 2938944 2928368
[2026-04-14 08:15:37] 2026-04-14 06:15:37,727 [wrapper] Test setup, not cleaning
[2026-04-14 08:15:37] 2026-04-14 06:15:37,729 [wrapper] apfmon messages muted
[2026-04-14 08:15:37] 2026-04-14 06:15:37,732 [wrapper] ==== wrapper stdout END ====
[2026-04-14 08:15:37] 2026-04-14 06:15:37,734 [wrapper] ==== wrapper stderr END ====
[2026-04-14 08:15:37]  *** Error codes and diagnostics ***
[2026-04-14 08:15:37]     "exeErrorCode": 0,
[2026-04-14 08:15:37]     "pilotErrorCode": 0,
[2026-04-14 08:15:37]  *** Listing of results directory ***
[2026-04-14 08:15:37] total 415048
[2026-04-14 08:15:37] -rwx------ 1 boinc boinc     36322 Apr 13 15:29 runpilot2-wrapper.sh
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc    644190 Apr 13 15:32 pilot3.tar.gz
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc      5094 Apr 13 15:38 queuedata.json
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc       100 Apr 14 06:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 08:15:37] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 06:33 run_atlas
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc       105 Apr 14 06:33 job.xml
[2026-04-14 08:15:37] -rw-r--r-- 2 boinc boinc 223506412 Apr 14 06:33 EVNT.48629115._000621.pool.root.1
[2026-04-14 08:15:37] drwxrwx--x 2 boinc boinc      4096 Apr 14 06:33 shared
[2026-04-14 08:15:37] -rw-r--r-- 2 boinc boinc    656950 Apr 14 06:33 input.tar.gz
[2026-04-14 08:15:37] -rw-r--r-- 2 boinc boinc     15665 Apr 14 06:33 start_atlas.sh
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc         0 Apr 14 06:33 boinc_setup_complete
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc      6361 Apr 14 06:33 init_data.xml
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc         0 Apr 14 06:33 boinc_lockfile
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc      2630 Apr 14 06:33 pandaJob.out
[2026-04-14 08:15:37] -rw------- 1 boinc boinc    997520 Apr 14 06:33 agis_schedconf.cvmfs.json
[2026-04-14 08:15:37] -rw------- 1 boinc boinc   1511579 Apr 14 06:33 agis_ddmendpoints.agis.ALL.json
[2026-04-14 08:15:37] -rw------- 1 boinc boinc       414 Apr 14 06:33 workernode_map.json
[2026-04-14 08:15:37] drwx------ 5 boinc boinc      4096 Apr 14 06:33 pilot3
[2026-04-14 08:15:37] -rw------- 1 boinc boinc        95 Apr 14 08:14 pilot_heartbeat.json
[2026-04-14 08:15:37] -rw------- 1 boinc boinc 195817189 Apr 14 08:14 HITS.49645815._015547.pool.root.1
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc       487 Apr 14 08:14 boinc_task_state.xml
[2026-04-14 08:15:37] -rw------- 1 boinc boinc      1019 Apr 14 08:14 memory_monitor_summary.json
[2026-04-14 08:15:37] -rw------- 1 boinc boinc    237226 Apr 14 08:15 log.49645815._015547.job.log.tgz.1
[2026-04-14 08:15:37] -rw------- 1 boinc boinc      6312 Apr 14 08:15 heartbeat_new.json
[2026-04-14 08:15:37] -rw------- 1 boinc boinc      6203 Apr 14 08:15 heartbeat.json
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc        27 Apr 14 08:15 wrapper_checkpoint.txt
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc      8192 Apr 14 08:15 boinc_mmap_file
[2026-04-14 08:15:37] -rw------- 1 boinc boinc       747 Apr 14 08:15 pilotlog.txt
[2026-04-14 08:15:37] -rw------- 1 boinc boinc    589036 Apr 14 08:15 log.49645815._015547.job.log.1
[2026-04-14 08:15:37] -rw------- 1 boinc boinc       357 Apr 14 08:15 output.list
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc       410 Apr 14 08:15 runtime_log
[2026-04-14 08:15:37] -rw------- 1 boinc boinc    839680 Apr 14 08:15 result.tar.gz
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc      8518 Apr 14 08:15 runtime_log.err
[2026-04-14 08:15:37] -rw------- 1 boinc boinc       657 Apr 14 08:15 ef9fe2c95048.diag
[2026-04-14 08:15:37] -rw-r--r-- 1 boinc boinc     11522 Apr 14 08:15 stderr.txt
[2026-04-14 08:15:37] HITS file was successfully produced:
[2026-04-14 08:15:37] -rw------- 1 boinc boinc 195817189 Apr 14 08:14 shared/HITS.pool.root.1
[2026-04-14 08:15:37]  *** Contents of shared directory: ***
[2026-04-14 08:15:37] total 410984
[2026-04-14 08:15:37] -rw-r--r-- 2 boinc boinc 223506412 Apr 14 06:33 ATLAS.root_0
[2026-04-14 08:15:37] -rw-r--r-- 2 boinc boinc    656950 Apr 14 06:33 input.tar.gz
[2026-04-14 08:15:37] -rw-r--r-- 2 boinc boinc     15665 Apr 14 06:33 start_atlas.sh
[2026-04-14 08:15:37] -rw------- 1 boinc boinc 195817189 Apr 14 08:14 HITS.pool.root.1
[2026-04-14 08:15:37] -rw------- 1 boinc boinc    839680 Apr 14 08:15 result.tar.gz
08:15:39 (2924326): run_atlas exited; CPU time 17324.139601
08:15:39 (2924326): called boinc_finish(0)

</stderr_txt>
]]>

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