Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:19:41 (30000): wrapper (7.7.26015): starting
03:19:41 (30000): wrapper: running run_atlas (--nthreads 8)
[2026-04-14 03:19:41] Arguments: --nthreads 8
[2026-04-14 03:19:41] Threads: 8
[2026-04-14 03:19:41] Checking for CVMFS
[2026-04-14 03:19:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 03:19:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 03:19:44] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 03:19:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 03:19:45] 2.11.2.0 11582 17984 103744 158435 3 104 22984161 25165824 519 130560 0 6494367 99.956 2724004 4221 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-14 03:19:45] CVMFS is ok
[2026-04-14 03:19:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 03:19:45] Checking for apptainer binary...
[2026-04-14 03:19:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 03:19:45] Running /usr/bin/apptainer --version
[2026-04-14 03:19:45] apptainer version 1.3.2-1.el7
[2026-04-14 03:19:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 03:19:51] cg-vwn468.simple-grid.lan
[2026-04-14 03:19:51] apptainer works
[2026-04-14 03:19:51] Set ATHENA_PROC_NUMBER=8
[2026-04-14 03:19:51] Set ATHENA_CORE_NUMBER=8
[2026-04-14 03:19:51] Starting ATLAS job with PandaID=7088168990
[2026-04-14 03:19:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 05:41:34]  *** The last 200 lines of the pilot log: ***
[2026-04-14 05:41:34] 2026-04-14 03:41:15,457 | INFO     | this job has now completed (state=finished)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,457 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,457 | INFO     | log transfer has been attempted: DONE
[2026-04-14 05:41:34] 2026-04-14 03:41:15,457 | INFO     | job 7088168990 has finished - writing final server update
[2026-04-14 05:41:34] 2026-04-14 03:41:15,458 | INFO     | total number of processed events: 400 (read)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,460 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7088168990/memory_monitor_summary.json (trf name=prmon)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,460 | INFO     | extracted standard info from prmon json
[2026-04-14 05:41:34] 2026-04-14 03:41:15,460 | INFO     | extracted standard memory fields from prmon json
[2026-04-14 05:41:34] 2026-04-14 03:41:15,461 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-14 05:41:34] 2026-04-14 03:41:15,461 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-14 05:41:34] 2026-04-14 03:41:15,464 | INFO     | fitting pss+swap vs Time
[2026-04-14 05:41:34] 2026-04-14 03:41:15,464 | INFO     | sum of square deviations: 729472282.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,465 | INFO     | sum of deviations: 16144605748.000002
[2026-04-14 05:41:34] 2026-04-14 03:41:15,465 | INFO     | mean x (centered): 0.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,465 | INFO     | mean y: 2496651.037593985
[2026-04-14 05:41:34] 2026-04-14 03:41:15,466 | INFO     | intersect: 2496651.037593985
[2026-04-14 05:41:34] 2026-04-14 03:41:15,466 | INFO     | chi2: 3.5017180683402565
[2026-04-14 05:41:34] 2026-04-14 03:41:15,466 | INFO     | sum of square deviations: 650252192.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,467 | INFO     | sum of deviations: 15823131142.5
[2026-04-14 05:41:34] 2026-04-14 03:41:15,467 | INFO     | mean x (centered): 0.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,467 | INFO     | mean y: 2496031.9140625
[2026-04-14 05:41:34] 2026-04-14 03:41:15,467 | INFO     | intersect: 2496031.9140625
[2026-04-14 05:41:34] 2026-04-14 03:41:15,468 | INFO     | chi2: 3.5108357484291375
[2026-04-14 05:41:34] 2026-04-14 03:41:15,468 | INFO     | current chi2=3.5108357484291375 (change=-0.2603773322391607 %)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,468 | INFO     | right removable region: 127
[2026-04-14 05:41:34] 2026-04-14 03:41:15,468 | INFO     | sum of square deviations: 650252192.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,469 | INFO     | sum of deviations: -19792367562.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,469 | INFO     | mean x (centered): 0.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,469 | INFO     | mean y: 2565272.875
[2026-04-14 05:41:34] 2026-04-14 03:41:15,469 | INFO     | intersect: 2565272.875
[2026-04-14 05:41:34] 2026-04-14 03:41:15,470 | INFO     | chi2: 0.20462941070820828
[2026-04-14 05:41:34] 2026-04-14 03:41:15,470 | INFO     | current chi2=0.20462941070820828 (change=94.15631393748387 %)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,470 | INFO     | sum of square deviations: 576985702.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,471 | INFO     | sum of deviations: -22818446046.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,471 | INFO     | mean x (centered): 0.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,471 | INFO     | mean y: 2571433.6341463416
[2026-04-14 05:41:34] 2026-04-14 03:41:15,471 | INFO     | intersect: 2571433.6341463416
[2026-04-14 05:41:34] 2026-04-14 03:41:15,471 | INFO     | chi2: 0.1259648095599461
[2026-04-14 05:41:34] 2026-04-14 03:41:15,472 | INFO     | current chi2=0.1259648095599461 (change=38.442470647796625 %)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,472 | INFO     | sum of square deviations: 509440249.5
[2026-04-14 05:41:34] 2026-04-14 03:41:15,473 | INFO     | sum of deviations: -19729208528.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,473 | INFO     | mean x (centered): 0.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,473 | INFO     | mean y: 2564440.254237288
[2026-04-14 05:41:34] 2026-04-14 03:41:15,473 | INFO     | intersect: 2564440.254237288
[2026-04-14 05:41:34] 2026-04-14 03:41:15,473 | INFO     | chi2: 0.1252780416179041
[2026-04-14 05:41:34] 2026-04-14 03:41:15,473 | INFO     | current chi2=0.1252780416179041 (change=0.5452061924605816 %)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,473 | INFO     | left removable region: 15
[2026-04-14 05:41:34] 2026-04-14 03:41:15,474 | INFO     | sum of square deviations: 435610028.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,474 | INFO     | sum of deviations: -18607582618.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,474 | INFO     | mean x (centered): 0.0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,475 | INFO     | mean y: 2567222.8571428573
[2026-04-14 05:41:34] 2026-04-14 03:41:15,475 | INFO     | intersect: 2567222.8571428573
[2026-04-14 05:41:34] 2026-04-14 03:41:15,475 | INFO     | chi2: 0.11818815897007295
[2026-04-14 05:41:34] 2026-04-14 03:41:15,475 | INFO     | current memory leak: -42.72 B/s (using 112 data points, chi2=0.12)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,476 | INFO     | could have reported an average CPU frequency of 2250 MHz (8 samples)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,476 | INFO     | ..............................
[2026-04-14 05:41:34] 2026-04-14 03:41:15,476 | INFO     | . Timing measurements:
[2026-04-14 05:41:34] 2026-04-14 03:41:15,476 | INFO     | . get job = 0 s
[2026-04-14 05:41:34] 2026-04-14 03:41:15,476 | INFO     | . initial setup = 53 s
[2026-04-14 05:41:34] 2026-04-14 03:41:15,476 | INFO     | . payload setup = 108 s
[2026-04-14 05:41:34] 2026-04-14 03:41:15,476 | INFO     | . stage-in = 0 s
[2026-04-14 05:41:34] 2026-04-14 03:41:15,476 | INFO     | . payload execution = 8168 s
[2026-04-14 05:41:34] 2026-04-14 03:41:15,477 | INFO     | . stage-out = 0 s
[2026-04-14 05:41:34] 2026-04-14 03:41:15,477 | INFO     | . log creation = 0 s
[2026-04-14 05:41:34] 2026-04-14 03:41:15,477 | INFO     | ..............................
[2026-04-14 05:41:34] 2026-04-14 03:41:15,874 | INFO     | 
[2026-04-14 05:41:34] 2026-04-14 03:41:15,874 | INFO     | job summary report
[2026-04-14 05:41:34] 2026-04-14 03:41:15,874 | INFO     | --------------------------------------------------
[2026-04-14 05:41:34] 2026-04-14 03:41:15,874 | INFO     | PanDA job id: 7088168990
[2026-04-14 05:41:34] 2026-04-14 03:41:15,874 | INFO     | task id: 49263200
[2026-04-14 05:41:34] 2026-04-14 03:41:15,874 | INFO     | errors: (none)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,874 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-14 05:41:34] 2026-04-14 03:41:15,874 | INFO     | pilot state: finished 
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | transexitcode: 0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | exeerrorcode: 0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | exeerrordiag: 
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | exitcode: 0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | exitmsg: OK
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | cpuconsumptiontime: 57116 s
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | nevents: 400
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | neventsw: 0
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | pid: 7114
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | pgrp: 7114
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | corecount: 8
[2026-04-14 05:41:34] 2026-04-14 03:41:15,875 | INFO     | event service: False
[2026-04-14 05:41:34] 2026-04-14 03:41:15,876 | INFO     | sizes: {0: 2279719, 1: 2281548, 8280: 2309336, 8281: 2318334, 8282: 2318390, 8283: 2318584}
[2026-04-14 05:41:34] 2026-04-14 03:41:15,876 | INFO     | --------------------------------------------------
[2026-04-14 05:41:34] 2026-04-14 03:41:15,876 | INFO     | 
[2026-04-14 05:41:34] 2026-04-14 03:41:15,876 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-14 05:41:34] 2026-04-14 03:41:15,910 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,910 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,910 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,910 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,910 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,910 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,910 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,911 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,912 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 05:41:34] 2026-04-14 03:41:15,912 | INFO     | job 7088168990 has completed (purged errors)
[2026-04-14 05:41:34] 2026-04-14 03:41:15,912 | INFO     | overall cleanup function is called
[2026-04-14 05:41:34] 2026-04-14 03:41:16,919 | INFO     | --- collectZombieJob: --- 10, [7114]
[2026-04-14 05:41:34] 2026-04-14 03:41:16,919 | INFO     | zombie collector waiting for pid 7114
[2026-04-14 05:41:34] 2026-04-14 03:41:16,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 05:41:34] 2026-04-14 03:41:16,920 | INFO     | collected zombie processes
[2026-04-14 05:41:34] 2026-04-14 03:41:16,920 | INFO     | will attempt to kill all subprocesses of pid=7114
[2026-04-14 05:41:34] 2026-04-14 03:41:16,987 | INFO     | process IDs to be killed: [7114] (in reverse order)
[2026-04-14 05:41:34] 2026-04-14 03:41:17,040 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 05:41:34] 2026-04-14 03:41:17,040 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 05:41:34] 2026-04-14 03:41:17,042 | INFO     | did not find any defunct processes belonging to 7114
[2026-04-14 05:41:34] 2026-04-14 03:41:17,045 | INFO     | did not find any defunct processes belonging to 7114
[2026-04-14 05:41:34] 2026-04-14 03:41:17,045 | INFO     | Ready for new job
[2026-04-14 05:41:34] 2026-04-14 03:41:17,047 | INFO     | **************************************
[2026-04-14 05:41:34] 2026-04-14 03:41:17,047 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 05:41:34] 2026-04-14 03:41:17,047 | INFO     | **************************************
[2026-04-14 05:41:34] 2026-04-14 03:41:17,047 | INFO     | 
[2026-04-14 05:41:34] 2026-04-14 03:41:17,048 | INFO     | pilot is running in a VM
[2026-04-14 05:41:34] 2026-04-14 03:41:17,048 | INFO     | architecture information:
[2026-04-14 05:41:34] 2026-04-14 03:41:17,052 | INFO     | executing command: cat /etc/os-release
[2026-04-14 05:41:34] 2026-04-14 03:41:17,074 | INFO     | cat /etc/os-release:
[2026-04-14 05:41:34] NAME="CentOS Linux"
[2026-04-14 05:41:34] VERSION="7 (Core)"
[2026-04-14 05:41:34] ID="centos"
[2026-04-14 05:41:34] ID_LIKE="rhel fedora"
[2026-04-14 05:41:34] VERSION_ID="7"
[2026-04-14 05:41:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 05:41:34] ANSI_COLOR="0;31"
[2026-04-14 05:41:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 05:41:34] HOME_URL="https://www.centos.org/"
[2026-04-14 05:41:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 05:41:34] 
[2026-04-14 05:41:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 05:41:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 05:41:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 05:41:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 05:41:34] 
[2026-04-14 05:41:34] 2026-04-14 03:41:17,075 | INFO     | **************************************
[2026-04-14 05:41:34] 2026-04-14 03:41:17,577 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-14 05:41:34] 2026-04-14 03:41:17,598 | INFO     | sufficient remaining disk space (494251540480 B)
[2026-04-14 05:41:34] 2026-04-14 03:41:17,598 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 05:41:34] 2026-04-14 03:41:17,599 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 05:41:34] 2026-04-14 03:41:17,599 | INFO     | update_server=False
[2026-04-14 05:41:34] 2026-04-14 03:41:17,599 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 05:41:34] 2026-04-14 03:41:17,599 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-14 05:41:34] 2026-04-14 03:41:17,600 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 05:41:34] 2026-04-14 03:41:17,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 05:41:34] 2026-04-14 03:41:17,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 05:41:34] 2026-04-14 03:41:17,600 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 05:41:34] 2026-04-14 03:41:17,601 | INFO     | aborting loop
[2026-04-14 05:41:34] 2026-04-14 03:41:17,853 | INFO     | all job control threads have been joined
[2026-04-14 05:41:34] 2026-04-14 03:41:18,320 | INFO     | all data control threads have been joined
[2026-04-14 05:41:34] 2026-04-14 03:41:18,604 | INFO     | [job] retrieve thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:18,606 | INFO     | [job] job monitor thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:18,620 | INFO     | all payload control threads have been joined
[2026-04-14 05:41:34] 2026-04-14 03:41:18,664 | INFO     | [job] validate thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:18,862 | INFO     | [job] control thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:18,866 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:19,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 05:41:34] 2026-04-14 03:41:19,112 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:19,254 | INFO     | [data] copytool_in thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:19,325 | INFO     | [data] control thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:19,462 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:19,626 | INFO     | [payload] control thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:19,646 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 05:41:34] 2026-04-14 03:41:19,919 | INFO     | [payload] validate_post thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:20,101 | INFO     | [payload] failed_post thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:20,600 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 05:41:34] 2026-04-14 03:41:21,048 | INFO     | [data] copytool_out thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:21,605 | INFO     | [job] queue monitor thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:23,660 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:24,247 | INFO     | [monitor] cgroup control has ended
[2026-04-14 05:41:34] 2026-04-14 03:41:27,657 | INFO     | job.realtimelogging is not enabled
[2026-04-14 05:41:34] 2026-04-14 03:41:28,662 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 05:41:34] 2026-04-14 03:41:29,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607010121536)>', '<ExcThread(monitor, started 140606340847360)>']
[2026-04-14 05:41:34] 2026-04-14 03:41:29,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 05:41:34] 2026-04-14 03:41:29,675 | INFO     | [monitor] control thread has ended
[2026-04-14 05:41:34] 2026-04-14 03:41:34,263 | INFO     | all workflow threads have been joined
[2026-04-14 05:41:34] 2026-04-14 03:41:34,263 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 05:41:34] 2026-04-14 03:41:34,263 | INFO     | traces error code: 0
[2026-04-14 05:41:34] 2026-04-14 03:41:34,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 05:41:34] 2026-04-14 03:41:34,416 [wrapper] ==== pilot stdout END ====
[2026-04-14 05:41:34] 2026-04-14 03:41:34,427 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 05:41:34] 2026-04-14 03:41:34,430 [wrapper] pilotpid: 2094
[2026-04-14 05:41:34] 2026-04-14 03:41:34,446 [wrapper] Pilot exit status: 0
[2026-04-14 05:41:34] 2026-04-14 03:41:34,506 [wrapper] pandaids: 7088168990
[2026-04-14 05:41:34] 2026-04-14 03:41:34,547 [wrapper] cleanup supervisor_pilot 19596 2095
[2026-04-14 05:41:34] 2026-04-14 03:41:34,551 [wrapper] Test setup, not cleaning
[2026-04-14 05:41:34] 2026-04-14 03:41:34,563 [wrapper] apfmon messages muted
[2026-04-14 05:41:34] 2026-04-14 03:41:34,576 [wrapper] ==== wrapper stdout END ====
[2026-04-14 05:41:34] 2026-04-14 03:41:34,580 [wrapper] ==== wrapper stderr END ====
[2026-04-14 05:41:34]  *** Error codes and diagnostics ***
[2026-04-14 05:41:34]     "exeErrorCode": 0,
[2026-04-14 05:41:34]     "pilotErrorCode": 0,
[2026-04-14 05:41:34]  *** Listing of results directory ***
[2026-04-14 05:41:34] total 416236
[2026-04-14 05:41:34] -rwx------. 1 boinc boinc     36322 Apr 13 15:28 runpilot2-wrapper.sh
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc    644190 Apr 13 15:32 pilot3.tar.gz
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc      5094 Apr 13 15:32 queuedata.json
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc       100 Apr 14 03:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 05:41:34] -rwxr-xr-x. 1 boinc boinc      7986 Apr 14 03:19 run_atlas
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc       105 Apr 14 03:19 job.xml
[2026-04-14 05:41:34] -rw-r--r--. 2 boinc boinc 222970643 Apr 14 03:19 EVNT.49263198._001364.pool.root.1
[2026-04-14 05:41:34] -rw-r--r--. 2 boinc boinc     15665 Apr 14 03:19 start_atlas.sh
[2026-04-14 05:41:34] drwxrwx--x. 2 boinc boinc        68 Apr 14 03:19 shared
[2026-04-14 05:41:34] -rw-r--r--. 2 boinc boinc    656927 Apr 14 03:19 input.tar.gz
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc      6307 Apr 14 03:19 init_data.xml
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc         0 Apr 14 03:19 boinc_lockfile
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc      2576 Apr 14 03:19 pandaJob.out
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc    997512 Apr 14 03:22 agis_schedconf.cvmfs.json
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc   1511579 Apr 14 03:22 agis_ddmendpoints.agis.ALL.json
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc       413 Apr 14 03:23 workernode_map.json
[2026-04-14 05:41:34] drwx------. 5 boinc boinc      4096 Apr 14 03:23 pilot3
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc        95 Apr 14 05:40 pilot_heartbeat.json
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc 196929551 Apr 14 05:40 HITS.49263200._052154.pool.root.1
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc       488 Apr 14 05:40 boinc_task_state.xml
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc      1010 Apr 14 05:41 memory_monitor_summary.json
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc    344933 Apr 14 05:41 log.49263200._052154.job.log.tgz.1
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc      6337 Apr 14 05:41 heartbeat_new.json
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc      6228 Apr 14 05:41 heartbeat.json
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc      8192 Apr 14 05:41 boinc_mmap_file
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc        27 Apr 14 05:41 wrapper_checkpoint.txt
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc      4682 Apr 14 05:41 pilotlog.txt
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc    791309 Apr 14 05:41 log.49263200._052154.job.log.1
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc       357 Apr 14 05:41 output.list
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc       410 Apr 14 05:41 runtime_log
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc   1157120 Apr 14 05:41 result.tar.gz
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc      8437 Apr 14 05:41 runtime_log.err
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc       652 Apr 14 05:41 ef77e6069b15.diag
[2026-04-14 05:41:34] -rw-r--r--. 1 boinc boinc     20489 Apr 14 05:41 stderr.txt
[2026-04-14 05:41:34] HITS file was successfully produced:
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc 196929551 Apr 14 05:40 shared/HITS.pool.root.1
[2026-04-14 05:41:34]  *** Contents of shared directory: ***
[2026-04-14 05:41:34] total 411856
[2026-04-14 05:41:34] -rw-r--r--. 2 boinc boinc 222970643 Apr 14 03:19 ATLAS.root_0
[2026-04-14 05:41:34] -rw-r--r--. 2 boinc boinc     15665 Apr 14 03:19 start_atlas.sh
[2026-04-14 05:41:34] -rw-r--r--. 2 boinc boinc    656927 Apr 14 03:19 input.tar.gz
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc 196929551 Apr 14 05:40 HITS.pool.root.1
[2026-04-14 05:41:34] -rw-------. 1 boinc boinc   1157120 Apr 14 05:41 result.tar.gz
05:41:36 (30000): run_atlas exited; CPU time 57168.800547
05:41:36 (30000): called boinc_finish(0)

</stderr_txt>
]]>

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