Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:12:00 (2167083): wrapper (7.7.26015): starting
08:12:00 (2167083): wrapper: running run_atlas (--nthreads 3)
[2026-04-14 08:12:00] Arguments: --nthreads 3
[2026-04-14 08:12:00] Threads: 3
[2026-04-14 08:12:00] Checking for CVMFS
[2026-04-14 08:12:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 08:12:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 08:12:01] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 08:12:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 08:12:01] 2.9.2.0 2038875 896 70172 158441 2 50 30539463 36864001 0 130560 0 491608 99.986 31823 3542 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-14 08:12:01] CVMFS is ok
[2026-04-14 08:12:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 08:12:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 08:12:01] Further information can be found at the LHC@home message board.
[2026-04-14 08:12:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 08:12:01] Checking for apptainer binary...
[2026-04-14 08:12:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 08:12:01] Running /usr/bin/apptainer --version
[2026-04-14 08:12:01] apptainer version 1.4.1-1.1
[2026-04-14 08:12:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 08:12:01] atlasA091
[2026-04-14 08:12:01] apptainer works
[2026-04-14 08:12:01] Set ATHENA_PROC_NUMBER=3
[2026-04-14 08:12:01] Set ATHENA_CORE_NUMBER=3
[2026-04-14 08:12:01] Starting ATLAS job with PandaID=7089229038
[2026-04-14 08:12:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 09:36:31]  *** The last 200 lines of the pilot log: ***
[2026-04-14 09:36:31] 2026-04-14 07:36:00,015 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-14 09:36:31] 2026-04-14 07:36:00,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-14 09:36:31] 2026-04-14 07:36:00,015 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 09:36:31] 2026-04-14 07:36:00,015 | INFO     | job 7089229038 has completed (purged errors)
[2026-04-14 09:36:31] 2026-04-14 07:36:00,015 | INFO     | overall cleanup function is called
[2026-04-14 09:36:31] 2026-04-14 07:36:01,021 | INFO     | --- collectZombieJob: --- 10, [2175562]
[2026-04-14 09:36:31] 2026-04-14 07:36:01,021 | INFO     | zombie collector waiting for pid 2175562
[2026-04-14 09:36:31] 2026-04-14 07:36:01,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 09:36:31] 2026-04-14 07:36:01,022 | INFO     | collected zombie processes
[2026-04-14 09:36:31] 2026-04-14 07:36:01,022 | INFO     | will attempt to kill all subprocesses of pid=2175562
[2026-04-14 09:36:31] 2026-04-14 07:36:01,064 | INFO     | process IDs to be killed: [2175562] (in reverse order)
[2026-04-14 09:36:31] 2026-04-14 07:36:01,090 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 09:36:31] 2026-04-14 07:36:01,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 09:36:31] 2026-04-14 07:36:01,092 | INFO     | did not find any defunct processes belonging to 2175562
[2026-04-14 09:36:31] 2026-04-14 07:36:01,093 | INFO     | did not find any defunct processes belonging to 2175562
[2026-04-14 09:36:31] 2026-04-14 07:36:01,093 | INFO     | Ready for new job
[2026-04-14 09:36:31] 2026-04-14 07:36:01,094 | INFO     | **************************************
[2026-04-14 09:36:31] 2026-04-14 07:36:01,094 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 09:36:31] 2026-04-14 07:36:01,094 | INFO     | **************************************
[2026-04-14 09:36:31] 2026-04-14 07:36:01,094 | INFO     | 
[2026-04-14 09:36:31] 2026-04-14 07:36:01,094 | INFO     | architecture information:
[2026-04-14 09:36:31] 2026-04-14 07:36:01,094 | INFO     | executing command: cat /etc/os-release
[2026-04-14 09:36:31] 2026-04-14 07:36:01,104 | INFO     | cat /etc/os-release:
[2026-04-14 09:36:31] NAME="CentOS Linux"
[2026-04-14 09:36:31] VERSION="7 (Core)"
[2026-04-14 09:36:31] ID="centos"
[2026-04-14 09:36:31] ID_LIKE="rhel fedora"
[2026-04-14 09:36:31] VERSION_ID="7"
[2026-04-14 09:36:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 09:36:31] ANSI_COLOR="0;31"
[2026-04-14 09:36:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 09:36:31] HOME_URL="https://www.centos.org/"
[2026-04-14 09:36:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 09:36:31] 
[2026-04-14 09:36:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 09:36:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 09:36:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 09:36:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 09:36:31] 
[2026-04-14 09:36:31] 2026-04-14 07:36:01,104 | INFO     | **************************************
[2026-04-14 09:36:31] 2026-04-14 07:36:01,607 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 09:36:31] 2026-04-14 07:36:01,620 | INFO     | sufficient remaining disk space (373029863424 B)
[2026-04-14 09:36:31] 2026-04-14 07:36:01,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 09:36:31] 2026-04-14 07:36:01,620 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 09:36:31] 2026-04-14 07:36:01,620 | INFO     | update_server=False
[2026-04-14 09:36:31] 2026-04-14 07:36:01,620 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 09:36:31] 2026-04-14 07:36:01,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 09:36:31] 2026-04-14 07:36:01,621 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 09:36:31] 2026-04-14 07:36:01,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 09:36:31] 2026-04-14 07:36:01,976 | INFO     | all payload control threads have been joined
[2026-04-14 09:36:31] 2026-04-14 07:36:02,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 09:36:31] 2026-04-14 07:36:02,530 | INFO     | aborting loop
[2026-04-14 09:36:31] 2026-04-14 07:36:02,622 | INFO     | [job] retrieve thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:02,626 | INFO     | [job] queue monitor thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:02,713 | INFO     | all data control threads have been joined
[2026-04-14 09:36:31] 2026-04-14 07:36:02,907 | INFO     | [payload] failed_post thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:02,920 | INFO     | all job control threads have been joined
[2026-04-14 09:36:31] 2026-04-14 07:36:02,981 | INFO     | [payload] control thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,109 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,513 | INFO     | [data] copytool_in thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,536 | INFO     | [job] job monitor thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,536 | INFO     | [payload] validate_post thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,681 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,718 | INFO     | [data] control thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,771 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,831 | INFO     | [job] validate thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,922 | INFO     | [job] control thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:03,953 | INFO     | [data] copytool_out thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:05,627 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:12,569 | INFO     | job.realtimelogging is not enabled
[2026-04-14 09:36:31] 2026-04-14 07:36:13,570 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 09:36:31] 2026-04-14 07:36:18,432 | INFO     | [monitor] cgroup control has ended
[2026-04-14 09:36:31] 2026-04-14 07:36:19,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140055872907072)>', '<ExcThread(monitor, started 140055343503104)>']
[2026-04-14 09:36:31] 2026-04-14 07:36:24,233 | INFO     | all workflow threads have been joined
[2026-04-14 09:36:31] 2026-04-14 07:36:24,234 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 09:36:31] 2026-04-14 07:36:24,235 | INFO     | traces error code: 0
[2026-04-14 09:36:31] 2026-04-14 07:36:24,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 09:36:31] 2026-04-14 07:36:31,315 | INFO     | PID=2171135 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-14 09:36:31] 2026-04-14 07:36:31,316 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 09:36:31] 2026-04-14 07:36:31,316 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 09:36:31] 2026-04-14 07:36:31,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 09:36:31] 2026-04-14 07:36:31,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 09:36:31] 2026-04-14 07:36:31,316 | INFO     | [monitor] control thread has ended
[2026-04-14 09:36:31] 2026-04-14 07:36:31,364 [wrapper] ==== pilot stdout END ====
[2026-04-14 09:36:31] 2026-04-14 07:36:31,367 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 09:36:31] 2026-04-14 07:36:31,369 [wrapper] pilotpid: 2171135
[2026-04-14 09:36:31] 2026-04-14 07:36:31,371 [wrapper] Pilot exit status: 0
[2026-04-14 09:36:31] 2026-04-14 07:36:31,379 [wrapper] pandaids: 7089229038
[2026-04-14 09:36:31] 2026-04-14 07:36:31,396 [wrapper] cleanup supervisor_pilot 2180856 2171136
[2026-04-14 09:36:31] 2026-04-14 07:36:31,399 [wrapper] Test setup, not cleaning
[2026-04-14 09:36:31] 2026-04-14 07:36:31,401 [wrapper] apfmon messages muted
[2026-04-14 09:36:31] 2026-04-14 07:36:31,404 [wrapper] ==== wrapper stdout END ====
[2026-04-14 09:36:31] 2026-04-14 07:36:31,406 [wrapper] ==== wrapper stderr END ====
[2026-04-14 09:36:31]  *** Error codes and diagnostics ***
[2026-04-14 09:36:31]     "exeErrorCode": 0,
[2026-04-14 09:36:31]     "pilotErrorCode": 0,
[2026-04-14 09:36:31]  *** Listing of results directory ***
[2026-04-14 09:36:31] total 415452
[2026-04-14 09:36:31] -rwx------ 1 boinc boinc     36322 Apr 13 10:52 runpilot2-wrapper.sh
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc      5094 Apr 13 10:55 queuedata.json
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc    644190 Apr 13 10:55 pilot3.tar.gz
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc       100 Apr 14 08:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 09:36:31] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 08:12 run_atlas
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc       105 Apr 14 08:12 job.xml
[2026-04-14 09:36:31] -rw-r--r-- 2 boinc boinc 223702638 Apr 14 08:12 EVNT.49263198._001688.pool.root.1
[2026-04-14 09:36:31] -rw-r--r-- 2 boinc boinc    656931 Apr 14 08:12 input.tar.gz
[2026-04-14 09:36:31] -rw-r--r-- 2 boinc boinc     15665 Apr 14 08:12 start_atlas.sh
[2026-04-14 09:36:31] drwxrwx--x 2 boinc boinc      4096 Apr 14 08:12 shared
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc         0 Apr 14 08:12 boinc_setup_complete
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc      6359 Apr 14 08:12 init_data.xml
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc         0 Apr 14 08:12 boinc_lockfile
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc      2576 Apr 14 08:12 pandaJob.out
[2026-04-14 09:36:31] -rw------- 1 boinc boinc    997512 Apr 14 08:12 agis_schedconf.cvmfs.json
[2026-04-14 09:36:31] -rw------- 1 boinc boinc   1511579 Apr 14 08:12 agis_ddmendpoints.agis.ALL.json
[2026-04-14 09:36:31] -rw------- 1 boinc boinc       425 Apr 14 08:12 workernode_map.json
[2026-04-14 09:36:31] drwx------ 5 boinc boinc      4096 Apr 14 08:12 pilot3
[2026-04-14 09:36:31] -rw------- 1 boinc boinc        95 Apr 14 09:35 pilot_heartbeat.json
[2026-04-14 09:36:31] -rw------- 1 boinc boinc 196211102 Apr 14 09:35 HITS.49263200._060519.pool.root.1
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc       487 Apr 14 09:35 boinc_task_state.xml
[2026-04-14 09:36:31] -rw------- 1 boinc boinc      1016 Apr 14 09:35 memory_monitor_summary.json
[2026-04-14 09:36:31] -rw------- 1 boinc boinc    243000 Apr 14 09:35 log.49263200._060519.job.log.tgz.1
[2026-04-14 09:36:31] -rw------- 1 boinc boinc      6322 Apr 14 09:35 heartbeat_new.json
[2026-04-14 09:36:31] -rw------- 1 boinc boinc      6213 Apr 14 09:35 heartbeat.json
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc      8192 Apr 14 09:36 boinc_mmap_file
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc        27 Apr 14 09:36 wrapper_checkpoint.txt
[2026-04-14 09:36:31] -rw------- 1 boinc boinc       747 Apr 14 09:36 pilotlog.txt
[2026-04-14 09:36:31] -rw------- 1 boinc boinc    491163 Apr 14 09:36 log.49263200._060519.job.log.1
[2026-04-14 09:36:31] -rw------- 1 boinc boinc       357 Apr 14 09:36 output.list
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc       410 Apr 14 09:36 runtime_log
[2026-04-14 09:36:31] -rw------- 1 boinc boinc    747520 Apr 14 09:36 result.tar.gz
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc      8533 Apr 14 09:36 runtime_log.err
[2026-04-14 09:36:31] -rw------- 1 boinc boinc       660 Apr 14 09:36 aed7ae5c3779.diag
[2026-04-14 09:36:31] -rw-r--r-- 1 boinc boinc     10984 Apr 14 09:36 stderr.txt
[2026-04-14 09:36:31] HITS file was successfully produced:
[2026-04-14 09:36:31] -rw------- 1 boinc boinc 196211102 Apr 14 09:35 shared/HITS.pool.root.1
[2026-04-14 09:36:31]  *** Contents of shared directory: ***
[2026-04-14 09:36:31] total 411476
[2026-04-14 09:36:31] -rw-r--r-- 2 boinc boinc 223702638 Apr 14 08:12 ATLAS.root_0
[2026-04-14 09:36:31] -rw-r--r-- 2 boinc boinc    656931 Apr 14 08:12 input.tar.gz
[2026-04-14 09:36:31] -rw-r--r-- 2 boinc boinc     15665 Apr 14 08:12 start_atlas.sh
[2026-04-14 09:36:31] -rw------- 1 boinc boinc 196211102 Apr 14 09:35 HITS.pool.root.1
[2026-04-14 09:36:31] -rw------- 1 boinc boinc    747520 Apr 14 09:36 result.tar.gz
09:36:33 (2167083): run_atlas exited; CPU time 14161.758940
09:36:33 (2167083): called boinc_finish(0)

</stderr_txt>
]]>

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