Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:27:44 (633592): wrapper (7.7.26015): starting
13:27:44 (633592): wrapper: running run_atlas (--nthreads 12)
[2026-04-14 13:27:44] Arguments: --nthreads 12
[2026-04-14 13:27:44] Threads: 12
[2026-04-14 13:27:44] Checking for CVMFS
[2026-04-14 13:27:44] No cvmfs_config command found, will try listing directly
[2026-04-14 13:27:44] CVMFS is ok
[2026-04-14 13:27:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 13:27:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 13:27:44] Further information can be found at the LHC@home message board.
[2026-04-14 13:27:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 13:27:44] Checking for apptainer binary...
[2026-04-14 13:27:44] which: no apptainer in ((null))
[2026-04-14 13:27:44] apptainer is not installed, using version from CVMFS
[2026-04-14 13:27:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 13:27:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot204/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut24.grid.cesnet.cz
[2026-04-14 13:27:44] apptainer works
[2026-04-14 13:27:44] Set ATHENA_PROC_NUMBER=12
[2026-04-14 13:27:44] Set ATHENA_CORE_NUMBER=12
[2026-04-14 13:27:44] Starting ATLAS job with PandaID=7089229675
[2026-04-14 13:27:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot204/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 13:56:03]  *** The last 200 lines of the pilot log: ***
[2026-04-14 13:56:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-14 13:56:03]  replicas=None
[2026-04-14 13:56:03]  scope=mc23_13p6TeV
[2026-04-14 13:56:03]  status=None
[2026-04-14 13:56:03]  status_code=0
[2026-04-14 13:56:03]  storage_token=
[2026-04-14 13:56:03]  surl=/var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7089229675/log.49263200._060702.job.log.tgz.1
[2026-04-14 13:56:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/e7/log.49263200._060702.job.log.tgz.1
[2026-04-14 13:56:03]  workdir=None
[2026-04-14 13:56:03] ]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,341 | INFO     | transferring file log.49263200._060702.job.log.tgz.1 from /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7089229675/log.49263200._060702.job.log.tgz.1 to /var/lib/
[2026-04-14 13:56:03] 2026-04-14 11:55:16,341 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7089229675/log.49263200._060702.job.log.tgz.1 /var/lib/boinc/var/slot204/slots/1/
[2026-04-14 13:56:03] 2026-04-14 11:55:16,357 | INFO     | adding to output.list: log.49263200._060702.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/19/e7/log.49263200._060702.job.log.tg
[2026-04-14 13:56:03] 2026-04-14 11:55:16,358 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-14 13:56:03] 2026-04-14 11:55:16,358 | INFO     | summary of transferred files:
[2026-04-14 13:56:03] 2026-04-14 11:55:16,358 | INFO     |  -- lfn=log.49263200._060702.job.log.tgz.1, status_code=0, status=transferred
[2026-04-14 13:56:03] 2026-04-14 11:55:16,358 | INFO     | stage-out finished correctly
[2026-04-14 13:56:03] 2026-04-14 11:55:16,407 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-14 13:56:03] 2026-04-14 11:55:16,458 | INFO     | job 7089229675 has state=finished
[2026-04-14 13:56:03] 2026-04-14 11:55:16,458 | INFO     | preparing for final server update for job 7089229675 in state='finished'
[2026-04-14 13:56:03] 2026-04-14 11:55:16,458 | INFO     | reading metadata from: /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7089229675/jobReport.json
[2026-04-14 13:56:03] 2026-04-14 11:55:16,460 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot204/slots/1/workernode_map.json
[2026-04-14 13:56:03] 2026-04-14 11:55:16,460 | INFO     | this job has now completed (state=finished)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,460 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,460 | INFO     | log transfer has been attempted: DONE
[2026-04-14 13:56:03] 2026-04-14 11:55:16,460 | INFO     | job 7089229675 has finished - writing final server update
[2026-04-14 13:56:03] 2026-04-14 11:55:16,460 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2586693/.job.ad'
[2026-04-14 13:56:03] 2026-04-14 11:55:16,460 | INFO     | total number of processed events: 400 (read)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,478 | INFO     | using path: /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7089229675/memory_monitor_summary.json (trf name=prmon)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,478 | INFO     | extracted standard info from prmon json
[2026-04-14 13:56:03] 2026-04-14 11:55:16,478 | INFO     | extracted standard memory fields from prmon json
[2026-04-14 13:56:03] 2026-04-14 11:55:16,478 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-14 13:56:03] 2026-04-14 11:55:16,478 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-14 13:56:03] 2026-04-14 11:55:16,479 | INFO     | fitting pss+swap vs Time
[2026-04-14 13:56:03] 2026-04-14 11:55:16,479 | INFO     | sum of square deviations: 2474465.0
[2026-04-14 13:56:03] 2026-04-14 11:55:16,479 | INFO     | sum of deviations: 70538234.5
[2026-04-14 13:56:03] 2026-04-14 11:55:16,479 | INFO     | mean x (centered): 0.0
[2026-04-14 13:56:03] 2026-04-14 11:55:16,479 | INFO     | mean y: 2703404.75
[2026-04-14 13:56:03] 2026-04-14 11:55:16,479 | INFO     | intersect: 2703404.75
[2026-04-14 13:56:03] 2026-04-14 11:55:16,479 | INFO     | chi2: 9.90043357016731e-06
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | current memory leak: 28.51 B/s (using 20 data points, chi2=0.00)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | could have reported an average CPU frequency of 3663 MHz (4 samples)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | ..............................
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | . Timing measurements:
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | . get job = 0 s
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | . initial setup = 4 s
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | . payload setup = 5 s
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | . stage-in = 0 s
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | . payload execution = 1621 s
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | . stage-out = 0 s
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | . log creation = 0 s
[2026-04-14 13:56:03] 2026-04-14 11:55:16,480 | INFO     | ..............................
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | 
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | job summary report
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | --------------------------------------------------
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | PanDA job id: 7089229675
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | task id: 49263200
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | errors: (none)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | pilot state: finished 
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | transexitcode: 0
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | exeerrorcode: 0
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | exeerrordiag: 
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | exitcode: 0
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | exitmsg: OK
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | cpuconsumptiontime: 17122 s
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | nevents: 400
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | neventsw: 0
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | pid: 652476
[2026-04-14 13:56:03] 2026-04-14 11:55:16,531 | INFO     | pgrp: 652476
[2026-04-14 13:56:03] 2026-04-14 11:55:16,532 | INFO     | corecount: 12
[2026-04-14 13:56:03] 2026-04-14 11:55:16,532 | INFO     | event service: False
[2026-04-14 13:56:03] 2026-04-14 11:55:16,532 | INFO     | sizes: {0: 2281532, 11: 2281532, 1630: 2315500}
[2026-04-14 13:56:03] 2026-04-14 11:55:16,532 | INFO     | --------------------------------------------------
[2026-04-14 13:56:03] 2026-04-14 11:55:16,532 | INFO     | 
[2026-04-14 13:56:03] 2026-04-14 11:55:16,532 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot204/slots/1
[2026-04-14 13:56:03] 2026-04-14 11:55:16,548 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | job 7089229675 has completed (purged errors)
[2026-04-14 13:56:03] 2026-04-14 11:55:16,549 | INFO     | overall cleanup function is called
[2026-04-14 13:56:03] 2026-04-14 11:55:17,556 | INFO     | --- collectZombieJob: --- 10, [652476]
[2026-04-14 13:56:03] 2026-04-14 11:55:17,556 | INFO     | zombie collector waiting for pid 652476
[2026-04-14 13:56:03] 2026-04-14 11:55:17,556 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 13:56:03] 2026-04-14 11:55:17,556 | INFO     | collected zombie processes
[2026-04-14 13:56:03] 2026-04-14 11:55:17,556 | INFO     | will attempt to kill all subprocesses of pid=652476
[2026-04-14 13:56:03] 2026-04-14 11:55:17,931 | INFO     | process IDs to be killed: [652476] (in reverse order)
[2026-04-14 13:56:03] 2026-04-14 11:55:18,069 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 13:56:03] 2026-04-14 11:55:18,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 13:56:03] 2026-04-14 11:55:18,089 | INFO     | did not find any defunct processes belonging to 652476
[2026-04-14 13:56:03] 2026-04-14 11:55:18,105 | INFO     | did not find any defunct processes belonging to 652476
[2026-04-14 13:56:03] 2026-04-14 11:55:18,105 | INFO     | Ready for new job
[2026-04-14 13:56:03] 2026-04-14 11:55:18,106 | INFO     | **************************************
[2026-04-14 13:56:03] 2026-04-14 11:55:18,106 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 13:56:03] 2026-04-14 11:55:18,106 | INFO     | **************************************
[2026-04-14 13:56:03] 2026-04-14 11:55:18,106 | INFO     | 
[2026-04-14 13:56:03] 2026-04-14 11:55:18,111 | INFO     | architecture information:
[2026-04-14 13:56:03] 2026-04-14 11:55:18,112 | INFO     | executing command: cat /etc/os-release
[2026-04-14 13:56:03] 2026-04-14 11:55:18,122 | INFO     | cat /etc/os-release:
[2026-04-14 13:56:03] NAME="CentOS Linux"
[2026-04-14 13:56:03] VERSION="7 (Core)"
[2026-04-14 13:56:03] ID="centos"
[2026-04-14 13:56:03] ID_LIKE="rhel fedora"
[2026-04-14 13:56:03] VERSION_ID="7"
[2026-04-14 13:56:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 13:56:03] ANSI_COLOR="0;31"
[2026-04-14 13:56:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 13:56:03] HOME_URL="https://www.centos.org/"
[2026-04-14 13:56:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 13:56:03] 
[2026-04-14 13:56:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 13:56:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 13:56:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 13:56:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 13:56:03] 
[2026-04-14 13:56:03] 2026-04-14 11:55:18,122 | INFO     | **************************************
[2026-04-14 13:56:03] 2026-04-14 11:55:18,625 | INFO     | executing command: df -mP /var/lib/boinc/var/slot204/slots/1
[2026-04-14 13:56:03] 2026-04-14 11:55:18,641 | INFO     | sufficient remaining disk space (251342618624 B)
[2026-04-14 13:56:03] 2026-04-14 11:55:18,641 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 13:56:03] 2026-04-14 11:55:18,642 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 13:56:03] 2026-04-14 11:55:18,642 | INFO     | update_server=False
[2026-04-14 13:56:03] 2026-04-14 11:55:18,642 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 13:56:03] 2026-04-14 11:55:18,642 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 13:56:03] 2026-04-14 11:55:18,905 | INFO     | all job control threads have been joined
[2026-04-14 13:56:03] 2026-04-14 11:55:19,284 | INFO     | all payload control threads have been joined
[2026-04-14 13:56:03] 2026-04-14 11:55:19,407 | INFO     | all data control threads have been joined
[2026-04-14 13:56:03] 2026-04-14 11:55:19,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 13:56:03] 2026-04-14 11:55:19,472 | INFO     | job.realtimelogging is not enabled
[2026-04-14 13:56:03] 2026-04-14 11:55:19,647 | INFO     | [job] retrieve thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:19,836 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:19,910 | INFO     | [job] control thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,075 | INFO     | [payload] validate_post thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,144 | INFO     | [job] validate thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,224 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,289 | INFO     | [payload] control thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,337 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,345 | WARNING  | process 652476 can no longer be monitored (due to stat problems) - aborting
[2026-04-14 13:56:03] 2026-04-14 11:55:20,412 | INFO     | [data] control thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,412 | INFO     | [payload] failed_post thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,477 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,546 | INFO     | [data] copytool_in thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:20,596 | INFO     | using path: /var/lib/boinc/var/slot204/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-14 13:56:03] 2026-04-14 11:55:20,596 | INFO     | using path: /var/lib/boinc/var/slot204/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-14 13:56:03] 2026-04-14 11:55:20,597 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-14 13:56:03] 2026-04-14 11:55:20,597 | WARNING  | maxPSS not found in memory monitor output
[2026-04-14 13:56:03] 2026-04-14 11:55:20,597 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7089229675/payload.stdout) since it has not been created yet
[2026-04-14 13:56:03] 2026-04-14 11:55:20,597 | INFO     | executing command: df -mP /var/lib/boinc/var/slot204/slots/1
[2026-04-14 13:56:03] 2026-04-14 11:55:20,608 | INFO     | sufficient remaining disk space (251341570048 B)
[2026-04-14 13:56:03] 2026-04-14 11:55:20,608 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-14 13:56:03] 2026-04-14 11:55:20,608 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7089229675/HITS.49263200._060702.pool.root.1 since it does not exist
[2026-04-14 13:56:03] 2026-04-14 11:55:20,924 | INFO     | number of running child processes to parent process 652476: 1
[2026-04-14 13:56:03] 2026-04-14 11:55:20,924 | INFO     | maximum number of monitored processes: 6
[2026-04-14 13:56:03] 2026-04-14 11:55:20,924 | INFO     | aborting job monitoring since job object (job id=7089229675) has expired
[2026-04-14 13:56:03] 2026-04-14 11:55:20,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 13:56:03] 2026-04-14 11:55:20,924 | INFO     | will abort loop
[2026-04-14 13:56:03] 2026-04-14 11:55:21,417 | INFO     | [data] copytool_out thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:21,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 13:56:03] 2026-04-14 11:55:21,930 | INFO     | [job] job monitor thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:22,546 | INFO     | [job] queue monitor thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:22,648 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 13:56:03] 2026-04-14 11:55:48,553 | INFO     | PID=641025 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-14 13:56:03] 2026-04-14 11:55:48,553 | INFO     | .. there are 14 such processes running
[2026-04-14 13:56:03] 2026-04-14 11:55:48,554 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 13:56:03] 2026-04-14 11:55:48,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 13:56:03] 2026-04-14 11:55:48,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 13:56:03] 2026-04-14 11:55:57,293 | INFO     | [monitor] cgroup control has ended
[2026-04-14 13:56:03] 2026-04-14 11:55:58,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23367051212608)>', '<ExcThread(monitor, started 23366812841728)>']
[2026-04-14 13:56:03] 2026-04-14 11:55:58,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 13:56:03] 2026-04-14 11:55:58,604 | INFO     | [monitor] control thread has ended
[2026-04-14 13:56:03] 2026-04-14 11:56:03,065 | INFO     | all workflow threads have been joined
[2026-04-14 13:56:03] 2026-04-14 11:56:03,065 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 13:56:03] 2026-04-14 11:56:03,065 | INFO     | traces error code: 0
[2026-04-14 13:56:03] 2026-04-14 11:56:03,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 13:56:03] 2026-04-14 11:56:03,205 [wrapper] ==== pilot stdout END ====
[2026-04-14 13:56:03] 2026-04-14 11:56:03,207 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 13:56:03] 2026-04-14 11:56:03,209 [wrapper] pilotpid: 641025
[2026-04-14 13:56:03] 2026-04-14 11:56:03,211 [wrapper] Pilot exit status: 0
[2026-04-14 13:56:03] 2026-04-14 11:56:03,217 [wrapper] pandaids: 7089229675
[2026-04-14 13:56:03] 2026-04-14 11:56:03,311 [wrapper] cleanup supervisor_pilot  766636 641026
[2026-04-14 13:56:03] 2026-04-14 11:56:03,313 [wrapper] Test setup, not cleaning
[2026-04-14 13:56:03] 2026-04-14 11:56:03,315 [wrapper] apfmon messages muted
[2026-04-14 13:56:03] 2026-04-14 11:56:03,317 [wrapper] ==== wrapper stdout END ====
[2026-04-14 13:56:03] 2026-04-14 11:56:03,318 [wrapper] ==== wrapper stderr END ====
[2026-04-14 13:56:03]  *** Error codes and diagnostics ***
[2026-04-14 13:56:03]     "exeErrorCode": 0,
[2026-04-14 13:56:03]     "pilotErrorCode": 0,
[2026-04-14 13:56:03]  *** Listing of results directory ***
[2026-04-14 13:56:03] total 408304
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc    644190 Apr 13 10:49 pilot3.tar.gz
[2026-04-14 13:56:03] -rwx------. 1 boinc boinc     36322 Apr 13 10:51 runpilot2-wrapper.sh
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc      5094 Apr 13 10:51 queuedata.json
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc       100 Apr 14 13:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 13:56:03] -rwxr-xr-x. 1 boinc boinc      7986 Apr 14 13:27 run_atlas
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc       105 Apr 14 13:27 job.xml
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc      6628 Apr 14 13:27 init_data.xml
[2026-04-14 13:56:03] -rw-r--r--. 2 boinc boinc 221661430 Apr 14 13:27 EVNT.49263198._001696.pool.root.1
[2026-04-14 13:56:03] -rw-r--r--. 2 boinc boinc     15665 Apr 14 13:27 start_atlas.sh
[2026-04-14 13:56:03] drwxrwx--x. 2 boinc boinc      4096 Apr 14 13:27 shared
[2026-04-14 13:56:03] -rw-r--r--. 2 boinc boinc    656923 Apr 14 13:27 input.tar.gz
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc         0 Apr 14 13:27 boinc_lockfile
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc      2576 Apr 14 13:27 pandaJob.out
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc    997527 Apr 14 13:27 agis_schedconf.cvmfs.json
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc   1511579 Apr 14 13:27 agis_ddmendpoints.agis.ALL.json
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc       442 Apr 14 13:27 workernode_map.json
[2026-04-14 13:56:03] drwx------. 5 boinc boinc      4096 Apr 14 13:27 pilot3
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc 191330709 Apr 14 13:54 HITS.49263200._060702.pool.root.1
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc       487 Apr 14 13:54 boinc_task_state.xml
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc      1025 Apr 14 13:55 memory_monitor_summary.json
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc    321432 Apr 14 13:55 log.49263200._060702.job.log.tgz.1
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc      6369 Apr 14 13:55 heartbeat_new.json
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc      6260 Apr 14 13:55 heartbeat.json
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc        95 Apr 14 13:55 pilot_heartbeat.json
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc        27 Apr 14 13:56 wrapper_checkpoint.txt
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc      8192 Apr 14 13:56 boinc_mmap_file
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc      6445 Apr 14 13:56 pilotlog.txt
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc    201015 Apr 14 13:56 log.49263200._060702.job.log.1
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc       357 Apr 14 13:56 output.list
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc       410 Apr 14 13:56 runtime_log
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc    542720 Apr 14 13:56 result.tar.gz
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc      8845 Apr 14 13:56 runtime_log.err
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc       658 Apr 14 13:56 ae964ac76e51.diag
[2026-04-14 13:56:03] -rw-r--r--. 1 boinc boinc     21832 Apr 14 13:56 stderr.txt
[2026-04-14 13:56:03] HITS file was successfully produced:
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc 191330709 Apr 14 13:54 shared/HITS.pool.root.1
[2026-04-14 13:56:03]  *** Contents of shared directory: ***
[2026-04-14 13:56:03] total 404516
[2026-04-14 13:56:03] -rw-r--r--. 2 boinc boinc 221661430 Apr 14 13:27 ATLAS.root_0
[2026-04-14 13:56:03] -rw-r--r--. 2 boinc boinc     15665 Apr 14 13:27 start_atlas.sh
[2026-04-14 13:56:03] -rw-r--r--. 2 boinc boinc    656923 Apr 14 13:27 input.tar.gz
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc 191330709 Apr 14 13:54 HITS.pool.root.1
[2026-04-14 13:56:03] -rw-------. 1 boinc boinc    542720 Apr 14 13:56 result.tar.gz
13:56:05 (633592): run_atlas exited; CPU time 17168.167307
13:56:05 (633592): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN