Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:01:34 (3008714): wrapper (7.7.26015): starting
19:01:34 (3008714): wrapper: running run_atlas (--nthreads 3)
[2026-04-14 19:01:34] Arguments: --nthreads 3
[2026-04-14 19:01:34] Threads: 3
[2026-04-14 19:01:34] Checking for CVMFS
[2026-04-14 19:01:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 19:01:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 19:01:34] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 19:01:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 19:01:34] 2.9.2.0 2781644 1571 71104 158462 4 1 30850384 36864000 0 130560 0 770427 99.986 60213 9969 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-14 19:01:34] CVMFS is ok
[2026-04-14 19:01:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 19:01:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 19:01:34] Further information can be found at the LHC@home message board.
[2026-04-14 19:01:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 19:01:34] Checking for apptainer binary...
[2026-04-14 19:01:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 19:01:34] Running /usr/bin/apptainer --version
[2026-04-14 19:01:35] apptainer version 1.4.1-1.1
[2026-04-14 19:01:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 19:01:35] belleA115a
[2026-04-14 19:01:35] apptainer works
[2026-04-14 19:01:35] Set ATHENA_PROC_NUMBER=3
[2026-04-14 19:01:35] Set ATHENA_CORE_NUMBER=3
[2026-04-14 19:01:35] Starting ATLAS job with PandaID=7089229871
[2026-04-14 19:01:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 20:50:59]  *** The last 200 lines of the pilot log: ***
[2026-04-14 20:50:59] 2026-04-14 18:49:55,307 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 20:50:59] 2026-04-14 18:49:55,307 | INFO     | job 7089229871 has completed (purged errors)
[2026-04-14 20:50:59] 2026-04-14 18:49:55,307 | INFO     | overall cleanup function is called
[2026-04-14 20:50:59] 2026-04-14 18:49:56,310 | INFO     | --- collectZombieJob: --- 10, [3017189]
[2026-04-14 20:50:59] 2026-04-14 18:49:56,310 | INFO     | zombie collector waiting for pid 3017189
[2026-04-14 20:50:59] 2026-04-14 18:49:56,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 20:50:59] 2026-04-14 18:49:56,310 | INFO     | collected zombie processes
[2026-04-14 20:50:59] 2026-04-14 18:49:56,310 | INFO     | will attempt to kill all subprocesses of pid=3017189
[2026-04-14 20:50:59] 2026-04-14 18:49:56,372 | INFO     | process IDs to be killed: [3017189] (in reverse order)
[2026-04-14 20:50:59] 2026-04-14 18:49:56,403 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 20:50:59] 2026-04-14 18:49:56,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 20:50:59] 2026-04-14 18:49:56,405 | INFO     | did not find any defunct processes belonging to 3017189
[2026-04-14 20:50:59] 2026-04-14 18:49:56,406 | INFO     | did not find any defunct processes belonging to 3017189
[2026-04-14 20:50:59] 2026-04-14 18:49:56,406 | INFO     | Ready for new job
[2026-04-14 20:50:59] 2026-04-14 18:49:56,407 | INFO     | **************************************
[2026-04-14 20:50:59] 2026-04-14 18:49:56,407 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 20:50:59] 2026-04-14 18:49:56,407 | INFO     | **************************************
[2026-04-14 20:50:59] 2026-04-14 18:49:56,407 | INFO     | 
[2026-04-14 20:50:59] 2026-04-14 18:49:56,407 | INFO     | architecture information:
[2026-04-14 20:50:59] 2026-04-14 18:49:56,408 | INFO     | executing command: cat /etc/os-release
[2026-04-14 20:50:59] 2026-04-14 18:49:56,417 | INFO     | cat /etc/os-release:
[2026-04-14 20:50:59] NAME="CentOS Linux"
[2026-04-14 20:50:59] VERSION="7 (Core)"
[2026-04-14 20:50:59] ID="centos"
[2026-04-14 20:50:59] ID_LIKE="rhel fedora"
[2026-04-14 20:50:59] VERSION_ID="7"
[2026-04-14 20:50:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 20:50:59] ANSI_COLOR="0;31"
[2026-04-14 20:50:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 20:50:59] HOME_URL="https://www.centos.org/"
[2026-04-14 20:50:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 20:50:59] 
[2026-04-14 20:50:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 20:50:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 20:50:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 20:50:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 20:50:59] 
[2026-04-14 20:50:59] 2026-04-14 18:49:56,417 | INFO     | **************************************
[2026-04-14 20:50:59] 2026-04-14 18:49:56,920 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 20:50:59] 2026-04-14 18:49:56,933 | INFO     | sufficient remaining disk space (329464676352 B)
[2026-04-14 20:50:59] 2026-04-14 18:49:56,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 20:50:59] 2026-04-14 18:49:56,933 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 20:50:59] 2026-04-14 18:49:56,933 | INFO     | update_server=False
[2026-04-14 20:50:59] 2026-04-14 18:49:56,933 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 20:50:59] 2026-04-14 18:49:56,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 20:50:59] 2026-04-14 18:49:56,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 20:50:59] 2026-04-14 18:49:56,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 20:50:59] 2026-04-14 18:49:56,951 | INFO     | aborting loop
[2026-04-14 20:50:59] 2026-04-14 18:49:57,060 | INFO     | all data control threads have been joined
[2026-04-14 20:50:59] 2026-04-14 18:49:57,524 | INFO     | all job control threads have been joined
[2026-04-14 20:50:59] 2026-04-14 18:49:57,925 | INFO     | all payload control threads have been joined
[2026-04-14 20:50:59] 2026-04-14 18:49:57,937 | INFO     | [job] retrieve thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:57,939 | INFO     | [job] queue monitor thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:57,956 | INFO     | [job] job monitor thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:57,979 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:57,979 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:58,000 | INFO     | [job] validate thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:58,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 20:50:59] 2026-04-14 18:49:58,062 | INFO     | [data] control thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:58,280 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:58,526 | INFO     | [job] control thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:58,709 | INFO     | [payload] validate_post thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:58,931 | INFO     | [payload] control thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:58,978 | INFO     | [data] copytool_in thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:49:59,038 | INFO     | [payload] failed_post thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:50:00,052 | INFO     | [data] copytool_out thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:50:00,940 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:50:07,975 | INFO     | job.realtimelogging is not enabled
[2026-04-14 20:50:59] 2026-04-14 18:50:08,981 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 20:50:59] 2026-04-14 18:50:26,729 | INFO     | PID=3012760 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-14 20:50:59] 2026-04-14 18:50:26,730 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 20:50:59] 2026-04-14 18:50:26,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 20:50:59] 2026-04-14 18:50:26,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 20:50:59] 2026-04-14 18:50:52,721 | INFO     | [monitor] cgroup control has ended
[2026-04-14 20:50:59] 2026-04-14 18:50:54,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139824425744192)>', '<ExcThread(monitor, started 139823801169664)>']
[2026-04-14 20:50:59] 2026-04-14 18:50:54,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 20:50:59] 2026-04-14 18:50:54,873 | INFO     | [monitor] control thread has ended
[2026-04-14 20:50:59] 2026-04-14 18:50:59,450 | INFO     | all workflow threads have been joined
[2026-04-14 20:50:59] 2026-04-14 18:50:59,450 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 20:50:59] 2026-04-14 18:50:59,450 | INFO     | traces error code: 0
[2026-04-14 20:50:59] 2026-04-14 18:50:59,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 20:50:59] 2026-04-14 18:50:59,504 [wrapper] ==== pilot stdout END ====
[2026-04-14 20:50:59] 2026-04-14 18:50:59,506 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 20:50:59] 2026-04-14 18:50:59,509 [wrapper] pilotpid: 3012760
[2026-04-14 20:50:59] 2026-04-14 18:50:59,511 [wrapper] Pilot exit status: 0
[2026-04-14 20:50:59] 2026-04-14 18:50:59,519 [wrapper] pandaids: 7089229871
[2026-04-14 20:50:59] 2026-04-14 18:50:59,539 [wrapper] cleanup supervisor_pilot 3024724 3012761
[2026-04-14 20:50:59] 2026-04-14 18:50:59,542 [wrapper] Test setup, not cleaning
[2026-04-14 20:50:59] 2026-04-14 18:50:59,544 [wrapper] apfmon messages muted
[2026-04-14 20:50:59] 2026-04-14 18:50:59,547 [wrapper] ==== wrapper stdout END ====
[2026-04-14 20:50:59] 2026-04-14 18:50:59,549 [wrapper] ==== wrapper stderr END ====
[2026-04-14 20:50:59]  *** Error codes and diagnostics ***
[2026-04-14 20:50:59]     "exeErrorCode": 0,
[2026-04-14 20:50:59]     "pilotErrorCode": 0,
[2026-04-14 20:50:59]  *** Listing of results directory ***
[2026-04-14 20:50:59] total 416772
[2026-04-14 20:50:59] -rwx------ 1 boinc boinc     36322 Apr 13 10:51 runpilot2-wrapper.sh
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc      5094 Apr 13 10:55 queuedata.json
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc    644190 Apr 13 10:55 pilot3.tar.gz
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc       100 Apr 14 19:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 20:50:59] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 19:01 run_atlas
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc       105 Apr 14 19:01 job.xml
[2026-04-14 20:50:59] -rw-r--r-- 2 boinc boinc 227347634 Apr 14 19:01 EVNT.48629115._000524.pool.root.1
[2026-04-14 20:50:59] drwxrwx--x 2 boinc boinc      4096 Apr 14 19:01 shared
[2026-04-14 20:50:59] -rw-r--r-- 2 boinc boinc    656948 Apr 14 19:01 input.tar.gz
[2026-04-14 20:50:59] -rw-r--r-- 2 boinc boinc     15665 Apr 14 19:01 start_atlas.sh
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc         0 Apr 14 19:01 boinc_setup_complete
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc      6359 Apr 14 19:01 init_data.xml
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc         0 Apr 14 19:01 boinc_lockfile
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc      2626 Apr 14 19:01 pandaJob.out
[2026-04-14 20:50:59] -rw------- 1 boinc boinc    997864 Apr 14 19:01 agis_schedconf.cvmfs.json
[2026-04-14 20:50:59] -rw------- 1 boinc boinc   1511579 Apr 14 19:01 agis_ddmendpoints.agis.ALL.json
[2026-04-14 20:50:59] -rw------- 1 boinc boinc       431 Apr 14 19:01 workernode_map.json
[2026-04-14 20:50:59] drwx------ 5 boinc boinc      4096 Apr 14 19:01 pilot3
[2026-04-14 20:50:59] -rw------- 1 boinc boinc 193674916 Apr 14 20:49 HITS.49645815._013106.pool.root.1
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc       487 Apr 14 20:49 boinc_task_state.xml
[2026-04-14 20:50:59] -rw------- 1 boinc boinc      1022 Apr 14 20:49 memory_monitor_summary.json
[2026-04-14 20:50:59] -rw------- 1 boinc boinc    231161 Apr 14 20:49 log.49645815._013106.job.log.tgz.1
[2026-04-14 20:50:59] -rw------- 1 boinc boinc      6344 Apr 14 20:49 heartbeat_new.json
[2026-04-14 20:50:59] -rw------- 1 boinc boinc      6235 Apr 14 20:49 heartbeat.json
[2026-04-14 20:50:59] -rw------- 1 boinc boinc        95 Apr 14 20:50 pilot_heartbeat.json
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc      8192 Apr 14 20:50 boinc_mmap_file
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc        27 Apr 14 20:50 wrapper_checkpoint.txt
[2026-04-14 20:50:59] -rw------- 1 boinc boinc      4819 Apr 14 20:50 pilotlog.txt
[2026-04-14 20:50:59] -rw------- 1 boinc boinc    622388 Apr 14 20:50 log.49645815._013106.job.log.1
[2026-04-14 20:50:59] -rw------- 1 boinc boinc       357 Apr 14 20:50 output.list
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc       410 Apr 14 20:50 runtime_log
[2026-04-14 20:50:59] -rw------- 1 boinc boinc    870400 Apr 14 20:50 result.tar.gz
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc      8538 Apr 14 20:50 runtime_log.err
[2026-04-14 20:50:59] -rw------- 1 boinc boinc       662 Apr 14 20:50 ae9f16ba6138.diag
[2026-04-14 20:50:59] -rw-r--r-- 1 boinc boinc     10782 Apr 14 20:50 stderr.txt
[2026-04-14 20:50:59] HITS file was successfully produced:
[2026-04-14 20:50:59] -rw------- 1 boinc boinc 193674916 Apr 14 20:49 shared/HITS.pool.root.1
[2026-04-14 20:50:59]  *** Contents of shared directory: ***
[2026-04-14 20:50:59] total 412676
[2026-04-14 20:50:59] -rw-r--r-- 2 boinc boinc 227347634 Apr 14 19:01 ATLAS.root_0
[2026-04-14 20:50:59] -rw-r--r-- 2 boinc boinc    656948 Apr 14 19:01 input.tar.gz
[2026-04-14 20:50:59] -rw-r--r-- 2 boinc boinc     15665 Apr 14 19:01 start_atlas.sh
[2026-04-14 20:50:59] -rw------- 1 boinc boinc 193674916 Apr 14 20:49 HITS.pool.root.1
[2026-04-14 20:50:59] -rw------- 1 boinc boinc    870400 Apr 14 20:50 result.tar.gz
20:51:01 (3008714): run_atlas exited; CPU time 18432.532262
20:51:01 (3008714): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN