Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:16:50 (2881648): wrapper (7.7.26015): starting
02:16:50 (2881648): wrapper: running run_atlas (--nthreads 3)
[2026-04-14 02:16:50] Arguments: --nthreads 3
[2026-04-14 02:16:50] Threads: 3
[2026-04-14 02:16:50] Checking for CVMFS
[2026-04-14 02:16:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 02:16:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 02:16:51] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 02:16:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 02:16:51] 2.9.2.0 2104384 4946 84376 158434 2 49 25637467 36864000 0 130560 0 2968879 99.988 186989 13407 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-14 02:16:51] CVMFS is ok
[2026-04-14 02:16:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 02:16:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 02:16:51] Further information can be found at the LHC@home message board.
[2026-04-14 02:16:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 02:16:51] Checking for apptainer binary...
[2026-04-14 02:16:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 02:16:51] Running /usr/bin/apptainer --version
[2026-04-14 02:16:51] apptainer version 1.4.1-1.1
[2026-04-14 02:16:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 02:16:51] thA385
[2026-04-14 02:16:51] apptainer works
[2026-04-14 02:16:51] Set ATHENA_PROC_NUMBER=3
[2026-04-14 02:16:51] Set ATHENA_CORE_NUMBER=3
[2026-04-14 02:16:51] Starting ATLAS job with PandaID=7089442201
[2026-04-14 02:16:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 03:41:13]  *** The last 200 lines of the pilot log: ***
[2026-04-14 03:41:13] 2026-04-14 01:40:18,784 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-04-14 03:41:13] 2026-04-14 01:40:18,800 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,800 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,800 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | job 7089442201 has completed (purged errors)
[2026-04-14 03:41:13] 2026-04-14 01:40:18,801 | INFO     | overall cleanup function is called
[2026-04-14 03:41:13] 2026-04-14 01:40:19,808 | INFO     | --- collectZombieJob: --- 10, [2890140]
[2026-04-14 03:41:13] 2026-04-14 01:40:19,808 | INFO     | zombie collector waiting for pid 2890140
[2026-04-14 03:41:13] 2026-04-14 01:40:19,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 03:41:13] 2026-04-14 01:40:19,808 | INFO     | collected zombie processes
[2026-04-14 03:41:13] 2026-04-14 01:40:19,808 | INFO     | will attempt to kill all subprocesses of pid=2890140
[2026-04-14 03:41:13] 2026-04-14 01:40:19,854 | INFO     | process IDs to be killed: [2890140] (in reverse order)
[2026-04-14 03:41:13] 2026-04-14 01:40:19,881 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 03:41:13] 2026-04-14 01:40:19,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 03:41:13] 2026-04-14 01:40:19,883 | INFO     | did not find any defunct processes belonging to 2890140
[2026-04-14 03:41:13] 2026-04-14 01:40:19,884 | INFO     | did not find any defunct processes belonging to 2890140
[2026-04-14 03:41:13] 2026-04-14 01:40:19,884 | INFO     | Ready for new job
[2026-04-14 03:41:13] 2026-04-14 01:40:19,885 | INFO     | **************************************
[2026-04-14 03:41:13] 2026-04-14 01:40:19,885 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 03:41:13] 2026-04-14 01:40:19,885 | INFO     | **************************************
[2026-04-14 03:41:13] 2026-04-14 01:40:19,885 | INFO     | 
[2026-04-14 03:41:13] 2026-04-14 01:40:19,885 | INFO     | architecture information:
[2026-04-14 03:41:13] 2026-04-14 01:40:19,885 | INFO     | executing command: cat /etc/os-release
[2026-04-14 03:41:13] 2026-04-14 01:40:19,895 | INFO     | cat /etc/os-release:
[2026-04-14 03:41:13] NAME="CentOS Linux"
[2026-04-14 03:41:13] VERSION="7 (Core)"
[2026-04-14 03:41:13] ID="centos"
[2026-04-14 03:41:13] ID_LIKE="rhel fedora"
[2026-04-14 03:41:13] VERSION_ID="7"
[2026-04-14 03:41:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 03:41:13] ANSI_COLOR="0;31"
[2026-04-14 03:41:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 03:41:13] HOME_URL="https://www.centos.org/"
[2026-04-14 03:41:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 03:41:13] 
[2026-04-14 03:41:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 03:41:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 03:41:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 03:41:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 03:41:13] 
[2026-04-14 03:41:13] 2026-04-14 01:40:19,895 | INFO     | **************************************
[2026-04-14 03:41:13] 2026-04-14 01:40:20,398 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 03:41:13] 2026-04-14 01:40:20,411 | INFO     | sufficient remaining disk space (379537326080 B)
[2026-04-14 03:41:13] 2026-04-14 01:40:20,411 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 03:41:13] 2026-04-14 01:40:20,411 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 03:41:13] 2026-04-14 01:40:20,411 | INFO     | update_server=False
[2026-04-14 03:41:13] 2026-04-14 01:40:20,411 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 03:41:13] 2026-04-14 01:40:20,682 | INFO     | all data control threads have been joined
[2026-04-14 03:41:13] 2026-04-14 01:40:20,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 03:41:13] 2026-04-14 01:40:20,760 | INFO     | aborting loop
[2026-04-14 03:41:13] 2026-04-14 01:40:21,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 03:41:13] 2026-04-14 01:40:21,125 | INFO     | all job control threads have been joined
[2026-04-14 03:41:13] 2026-04-14 01:40:21,156 | INFO     | all payload control threads have been joined
[2026-04-14 03:41:13] 2026-04-14 01:40:21,417 | INFO     | [job] retrieve thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:21,687 | INFO     | [data] control thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:21,766 | INFO     | [job] job monitor thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:21,995 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,130 | INFO     | [job] control thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,141 | INFO     | [payload] failed_post thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,162 | INFO     | [payload] control thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,338 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,346 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,425 | INFO     | [payload] validate_post thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,553 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,828 | INFO     | [job] validate thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:22,898 | INFO     | [data] copytool_in thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:23,100 | INFO     | [data] copytool_out thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:23,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 03:41:13] 2026-04-14 01:40:23,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 03:41:13] 2026-04-14 01:40:24,349 | INFO     | [job] queue monitor thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:27,421 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 03:41:13] 2026-04-14 01:40:50,772 | INFO     | PID=2885708 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-14 03:41:13] 2026-04-14 01:40:50,772 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 03:41:13] 2026-04-14 01:40:50,773 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 03:41:13] 2026-04-14 01:40:50,773 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 03:41:13] 2026-04-14 01:41:07,332 | INFO     | [monitor] cgroup control has ended
[2026-04-14 03:41:13] 2026-04-14 01:41:08,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140237384140608)>', '<ExcThread(monitor, started 140236881372928)>']
[2026-04-14 03:41:13] 2026-04-14 01:41:08,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 03:41:13] 2026-04-14 01:41:08,867 | INFO     | [monitor] control thread has ended
[2026-04-14 03:41:13] 2026-04-14 01:41:13,181 | INFO     | all workflow threads have been joined
[2026-04-14 03:41:13] 2026-04-14 01:41:13,181 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 03:41:13] 2026-04-14 01:41:13,181 | INFO     | traces error code: 0
[2026-04-14 03:41:13] 2026-04-14 01:41:13,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 03:41:13] 2026-04-14 01:41:13,232 [wrapper] ==== pilot stdout END ====
[2026-04-14 03:41:13] 2026-04-14 01:41:13,234 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 03:41:13] 2026-04-14 01:41:13,237 [wrapper] pilotpid: 2885708
[2026-04-14 03:41:13] 2026-04-14 01:41:13,239 [wrapper] Pilot exit status: 0
[2026-04-14 03:41:13] 2026-04-14 01:41:13,247 [wrapper] pandaids: 7089442201
[2026-04-14 03:41:13] 2026-04-14 01:41:13,265 [wrapper] cleanup supervisor_pilot 2895390 2885709
[2026-04-14 03:41:13] 2026-04-14 01:41:13,268 [wrapper] Test setup, not cleaning
[2026-04-14 03:41:13] 2026-04-14 01:41:13,270 [wrapper] apfmon messages muted
[2026-04-14 03:41:13] 2026-04-14 01:41:13,273 [wrapper] ==== wrapper stdout END ====
[2026-04-14 03:41:13] 2026-04-14 01:41:13,275 [wrapper] ==== wrapper stderr END ====
[2026-04-14 03:41:13]  *** Error codes and diagnostics ***
[2026-04-14 03:41:13]     "exeErrorCode": 0,
[2026-04-14 03:41:13]     "pilotErrorCode": 0,
[2026-04-14 03:41:13]  *** Listing of results directory ***
[2026-04-14 03:41:13] total 412644
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc    650909 Apr  3 16:16 pilot3.tar.gz
[2026-04-14 03:41:13] -rwx------ 1 boinc boinc     36322 Apr 13 13:14 runpilot2-wrapper.sh
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc      5094 Apr 13 13:14 queuedata.json
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc       100 Apr 14 02:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 03:41:13] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 02:16 run_atlas
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc       105 Apr 14 02:16 job.xml
[2026-04-14 03:41:13] -rw-r--r-- 2 boinc boinc 222754690 Apr 14 02:16 EVNT.49263189._001979.pool.root.1
[2026-04-14 03:41:13] -rw-r--r-- 2 boinc boinc    664479 Apr 14 02:16 input.tar.gz
[2026-04-14 03:41:13] -rw-r--r-- 2 boinc boinc     15665 Apr 14 02:16 start_atlas.sh
[2026-04-14 03:41:13] drwxrwx--x 2 boinc boinc      4096 Apr 14 02:16 shared
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc         0 Apr 14 02:16 boinc_setup_complete
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc      6361 Apr 14 02:16 init_data.xml
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc         0 Apr 14 02:16 boinc_lockfile
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc      2578 Apr 14 02:16 pandaJob.out
[2026-04-14 03:41:13] -rw------- 1 boinc boinc    997512 Apr 14 02:16 agis_schedconf.cvmfs.json
[2026-04-14 03:41:13] -rw------- 1 boinc boinc   1511579 Apr 14 02:16 agis_ddmendpoints.agis.ALL.json
[2026-04-14 03:41:13] -rw------- 1 boinc boinc       422 Apr 14 02:17 workernode_map.json
[2026-04-14 03:41:13] drwx------ 5 boinc boinc      4096 Apr 14 02:17 pilot3
[2026-04-14 03:41:13] -rw------- 1 boinc boinc 194306818 Apr 14 03:39 HITS.49263191._070767.pool.root.1
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc       487 Apr 14 03:40 boinc_task_state.xml
[2026-04-14 03:41:13] -rw------- 1 boinc boinc      1019 Apr 14 03:40 memory_monitor_summary.json
[2026-04-14 03:41:13] -rw------- 1 boinc boinc    221071 Apr 14 03:40 log.49263191._070767.job.log.tgz.1
[2026-04-14 03:41:13] -rw------- 1 boinc boinc      6319 Apr 14 03:40 heartbeat_new.json
[2026-04-14 03:41:13] -rw------- 1 boinc boinc      6210 Apr 14 03:40 heartbeat.json
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc      8192 Apr 14 03:40 boinc_mmap_file
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc        27 Apr 14 03:40 wrapper_checkpoint.txt
[2026-04-14 03:41:13] -rw------- 1 boinc boinc        95 Apr 14 03:40 pilot_heartbeat.json
[2026-04-14 03:41:13] -rw------- 1 boinc boinc      4747 Apr 14 03:41 pilotlog.txt
[2026-04-14 03:41:13] -rw------- 1 boinc boinc    489826 Apr 14 03:41 log.49263191._070767.job.log.1
[2026-04-14 03:41:13] -rw------- 1 boinc boinc       357 Apr 14 03:41 output.list
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc       410 Apr 14 03:41 runtime_log
[2026-04-14 03:41:13] -rw------- 1 boinc boinc    727040 Apr 14 03:41 result.tar.gz
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc      8518 Apr 14 03:41 runtime_log.err
[2026-04-14 03:41:13] -rw------- 1 boinc boinc       657 Apr 14 03:41 d008783786f9.diag
[2026-04-14 03:41:13] -rw-r--r-- 1 boinc boinc     12722 Apr 14 03:41 stderr.txt
[2026-04-14 03:41:13] HITS file was successfully produced:
[2026-04-14 03:41:13] -rw------- 1 boinc boinc 194306818 Apr 14 03:39 shared/HITS.pool.root.1
[2026-04-14 03:41:13]  *** Contents of shared directory: ***
[2026-04-14 03:41:13] total 408680
[2026-04-14 03:41:13] -rw-r--r-- 2 boinc boinc 222754690 Apr 14 02:16 ATLAS.root_0
[2026-04-14 03:41:13] -rw-r--r-- 2 boinc boinc    664479 Apr 14 02:16 input.tar.gz
[2026-04-14 03:41:13] -rw-r--r-- 2 boinc boinc     15665 Apr 14 02:16 start_atlas.sh
[2026-04-14 03:41:13] -rw------- 1 boinc boinc 194306818 Apr 14 03:39 HITS.pool.root.1
[2026-04-14 03:41:13] -rw------- 1 boinc boinc    727040 Apr 14 03:41 result.tar.gz
03:41:14 (2881648): run_atlas exited; CPU time 13959.170161
03:41:14 (2881648): called boinc_finish(0)

</stderr_txt>
]]>

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