Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:28:06 (977697): wrapper (7.7.26015): starting
02:28:06 (977697): wrapper: running run_atlas (--nthreads 3)
[2026-04-14 02:28:06] Arguments: --nthreads 3
[2026-04-14 02:28:06] Threads: 3
[2026-04-14 02:28:06] Checking for CVMFS
[2026-04-14 02:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-14 02:28:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-14 02:28:07] Running cvmfs_config stat atlas.cern.ch
[2026-04-14 02:28:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-14 02:28:07] 2.9.2.0 129776 6034 67488 158434 3 49 25680835 36864000 0 130560 0 3313518 99.987 229809 13012 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-14 02:28:07] CVMFS is ok
[2026-04-14 02:28:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-14 02:28:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-14 02:28:07] Further information can be found at the LHC@home message board.
[2026-04-14 02:28:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-14 02:28:07] Checking for apptainer binary...
[2026-04-14 02:28:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-14 02:28:07] Running /usr/bin/apptainer --version
[2026-04-14 02:28:07] apptainer version 1.4.1-1.1
[2026-04-14 02:28:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-14 02:28:07] thA335
[2026-04-14 02:28:07] apptainer works
[2026-04-14 02:28:07] Set ATHENA_PROC_NUMBER=3
[2026-04-14 02:28:07] Set ATHENA_CORE_NUMBER=3
[2026-04-14 02:28:07] Starting ATLAS job with PandaID=7089336375
[2026-04-14 02:28:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-14 04:00:35]  *** The last 200 lines of the pilot log: ***
[2026-04-14 04:00:35] 2026-04-14 01:59:40,361 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,361 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | job 7089336375 has completed (purged errors)
[2026-04-14 04:00:35] 2026-04-14 01:59:40,362 | INFO     | overall cleanup function is called
[2026-04-14 04:00:35] 2026-04-14 01:59:41,368 | INFO     | --- collectZombieJob: --- 10, [986180]
[2026-04-14 04:00:35] 2026-04-14 01:59:41,369 | INFO     | zombie collector waiting for pid 986180
[2026-04-14 04:00:35] 2026-04-14 01:59:41,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-14 04:00:35] 2026-04-14 01:59:41,369 | INFO     | collected zombie processes
[2026-04-14 04:00:35] 2026-04-14 01:59:41,369 | INFO     | will attempt to kill all subprocesses of pid=986180
[2026-04-14 04:00:35] 2026-04-14 01:59:41,406 | INFO     | process IDs to be killed: [986180] (in reverse order)
[2026-04-14 04:00:35] 2026-04-14 01:59:41,432 | WARNING  | found no corresponding commands to process id(s)
[2026-04-14 04:00:35] 2026-04-14 01:59:41,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-14 04:00:35] 2026-04-14 01:59:41,433 | INFO     | did not find any defunct processes belonging to 986180
[2026-04-14 04:00:35] 2026-04-14 01:59:41,434 | INFO     | did not find any defunct processes belonging to 986180
[2026-04-14 04:00:35] 2026-04-14 01:59:41,434 | INFO     | Ready for new job
[2026-04-14 04:00:35] 2026-04-14 01:59:41,435 | INFO     | **************************************
[2026-04-14 04:00:35] 2026-04-14 01:59:41,435 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-14 04:00:35] 2026-04-14 01:59:41,435 | INFO     | **************************************
[2026-04-14 04:00:35] 2026-04-14 01:59:41,435 | INFO     | 
[2026-04-14 04:00:35] 2026-04-14 01:59:41,435 | INFO     | architecture information:
[2026-04-14 04:00:35] 2026-04-14 01:59:41,435 | INFO     | executing command: cat /etc/os-release
[2026-04-14 04:00:35] 2026-04-14 01:59:41,446 | INFO     | cat /etc/os-release:
[2026-04-14 04:00:35] NAME="CentOS Linux"
[2026-04-14 04:00:35] VERSION="7 (Core)"
[2026-04-14 04:00:35] ID="centos"
[2026-04-14 04:00:35] ID_LIKE="rhel fedora"
[2026-04-14 04:00:35] VERSION_ID="7"
[2026-04-14 04:00:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-14 04:00:35] ANSI_COLOR="0;31"
[2026-04-14 04:00:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-14 04:00:35] HOME_URL="https://www.centos.org/"
[2026-04-14 04:00:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-14 04:00:35] 
[2026-04-14 04:00:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-14 04:00:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-14 04:00:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-14 04:00:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-14 04:00:35] 
[2026-04-14 04:00:35] 2026-04-14 01:59:41,446 | INFO     | **************************************
[2026-04-14 04:00:35] 2026-04-14 01:59:41,950 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-14 04:00:35] 2026-04-14 01:59:41,963 | INFO     | sufficient remaining disk space (836240408576 B)
[2026-04-14 04:00:35] 2026-04-14 01:59:41,964 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-14 04:00:35] 2026-04-14 01:59:41,964 | INFO     | current server update state: UPDATING_FINAL
[2026-04-14 04:00:35] 2026-04-14 01:59:41,964 | INFO     | update_server=False
[2026-04-14 04:00:35] 2026-04-14 01:59:41,964 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-14 04:00:35] 2026-04-14 01:59:41,964 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-14 04:00:35] 2026-04-14 01:59:42,161 | INFO     | all job control threads have been joined
[2026-04-14 04:00:35] 2026-04-14 01:59:42,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-14 04:00:35] 2026-04-14 01:59:42,364 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-14 04:00:35] 2026-04-14 01:59:42,364 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-14 04:00:35] 2026-04-14 01:59:42,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-14 04:00:35] 2026-04-14 01:59:42,365 | INFO     | will abort loop
[2026-04-14 04:00:35] 2026-04-14 01:59:42,675 | INFO     | all payload control threads have been joined
[2026-04-14 04:00:35] 2026-04-14 01:59:42,959 | INFO     | all data control threads have been joined
[2026-04-14 04:00:35] 2026-04-14 01:59:42,970 | INFO     | [job] retrieve thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,048 | INFO     | [job] create_data_payload thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,150 | INFO     | [job] validate thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,167 | INFO     | [job] control thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,269 | INFO     | [payload] execute_payloads thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,357 | INFO     | [payload] validate_pre thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,370 | INFO     | [job] job monitor thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,400 | INFO     | [data] copytool_in thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,534 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,600 | INFO     | [payload] validate_post thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,681 | INFO     | [payload] control thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,942 | INFO     | [payload] failed_post thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:43,965 | INFO     | [data] control thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:44,340 | INFO     | [data] copytool_out thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:44,902 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-14 04:00:35] 2026-04-14 01:59:45,908 | INFO     | [job] queue monitor thread has finished
[2026-04-14 04:00:35] 2026-04-14 01:59:45,971 | INFO     | [data] queue_monitor thread has finished
[2026-04-14 04:00:35] 2026-04-14 02:00:11,651 | INFO     | PID=981746 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-14 04:00:35] 2026-04-14 02:00:11,651 | INFO     | found 0 job(s) in 20 queues
[2026-04-14 04:00:35] 2026-04-14 02:00:11,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-14 04:00:35] 2026-04-14 02:00:11,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-14 04:00:35] 2026-04-14 02:00:29,785 | INFO     | [monitor] cgroup control has ended
[2026-04-14 04:00:35] 2026-04-14 02:00:30,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474483607360)>', '<ExcThread(monitor, started 140473498834688)>']
[2026-04-14 04:00:35] 2026-04-14 02:00:30,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-14 04:00:35] 2026-04-14 02:00:30,752 | INFO     | [monitor] control thread has ended
[2026-04-14 04:00:35] 2026-04-14 02:00:35,074 | INFO     | all workflow threads have been joined
[2026-04-14 04:00:35] 2026-04-14 02:00:35,074 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-14 04:00:35] 2026-04-14 02:00:35,075 | INFO     | traces error code: 0
[2026-04-14 04:00:35] 2026-04-14 02:00:35,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-14 04:00:35] 2026-04-14 02:00:35,125 [wrapper] ==== pilot stdout END ====
[2026-04-14 04:00:35] 2026-04-14 02:00:35,128 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-14 04:00:35] 2026-04-14 02:00:35,132 [wrapper] pilotpid: 981746
[2026-04-14 04:00:35] 2026-04-14 02:00:35,134 [wrapper] Pilot exit status: 0
[2026-04-14 04:00:35] 2026-04-14 02:00:35,143 [wrapper] pandaids: 7089336375
[2026-04-14 04:00:35] 2026-04-14 02:00:35,160 [wrapper] cleanup supervisor_pilot  991442 981747
[2026-04-14 04:00:35] 2026-04-14 02:00:35,163 [wrapper] Test setup, not cleaning
[2026-04-14 04:00:35] 2026-04-14 02:00:35,166 [wrapper] apfmon messages muted
[2026-04-14 04:00:35] 2026-04-14 02:00:35,169 [wrapper] ==== wrapper stdout END ====
[2026-04-14 04:00:35] 2026-04-14 02:00:35,172 [wrapper] ==== wrapper stderr END ====
[2026-04-14 04:00:35]  *** Error codes and diagnostics ***
[2026-04-14 04:00:35]     "exeErrorCode": 0,
[2026-04-14 04:00:35]     "pilotErrorCode": 0,
[2026-04-14 04:00:35]  *** Listing of results directory ***
[2026-04-14 04:00:35] total 410996
[2026-04-14 04:00:35] -rwx------ 1 boinc boinc     36322 Apr 13 11:56 runpilot2-wrapper.sh
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc    644190 Apr 13 11:58 pilot3.tar.gz
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc      5094 Apr 13 11:58 queuedata.json
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc       100 Apr 14 02:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-14 04:00:35] -rwxr-xr-x 1 boinc boinc      7986 Apr 14 02:28 run_atlas
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc       105 Apr 14 02:28 job.xml
[2026-04-14 04:00:35] -rw-r--r-- 2 boinc boinc 224902355 Apr 14 02:28 EVNT.49263189._001954.pool.root.1
[2026-04-14 04:00:35] -rw-r--r-- 2 boinc boinc    656925 Apr 14 02:28 input.tar.gz
[2026-04-14 04:00:35] -rw-r--r-- 2 boinc boinc     15665 Apr 14 02:28 start_atlas.sh
[2026-04-14 04:00:35] drwxrwx--x 2 boinc boinc      4096 Apr 14 02:28 shared
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc         0 Apr 14 02:28 boinc_setup_complete
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc      6111 Apr 14 02:28 init_data.xml
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc         0 Apr 14 02:28 boinc_lockfile
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc      2579 Apr 14 02:28 pandaJob.out
[2026-04-14 04:00:35] -rw------- 1 boinc boinc    997512 Apr 14 02:28 agis_schedconf.cvmfs.json
[2026-04-14 04:00:35] -rw------- 1 boinc boinc   1511579 Apr 14 02:28 agis_ddmendpoints.agis.ALL.json
[2026-04-14 04:00:35] -rw------- 1 boinc boinc       425 Apr 14 02:28 workernode_map.json
[2026-04-14 04:00:35] drwx------ 5 boinc boinc      4096 Apr 14 02:28 pilot3
[2026-04-14 04:00:35] -rw------- 1 boinc boinc 190395737 Apr 14 03:59 HITS.49263191._070111.pool.root.1
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc       487 Apr 14 03:59 boinc_task_state.xml
[2026-04-14 04:00:35] -rw------- 1 boinc boinc      1013 Apr 14 03:59 memory_monitor_summary.json
[2026-04-14 04:00:35] -rw------- 1 boinc boinc    228134 Apr 14 03:59 log.49263191._070111.job.log.tgz.1
[2026-04-14 04:00:35] -rw------- 1 boinc boinc      6322 Apr 14 03:59 heartbeat_new.json
[2026-04-14 04:00:35] -rw------- 1 boinc boinc      6213 Apr 14 03:59 heartbeat.json
[2026-04-14 04:00:35] -rw------- 1 boinc boinc        95 Apr 14 04:00 pilot_heartbeat.json
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc      8192 Apr 14 04:00 boinc_mmap_file
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc        27 Apr 14 04:00 wrapper_checkpoint.txt
[2026-04-14 04:00:35] -rw------- 1 boinc boinc      4932 Apr 14 04:00 pilotlog.txt
[2026-04-14 04:00:35] -rw------- 1 boinc boinc    530872 Apr 14 04:00 log.49263191._070111.job.log.1
[2026-04-14 04:00:35] -rw------- 1 boinc boinc       357 Apr 14 04:00 output.list
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc       410 Apr 14 04:00 runtime_log
[2026-04-14 04:00:35] -rw------- 1 boinc boinc    778240 Apr 14 04:00 result.tar.gz
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc      8518 Apr 14 04:00 runtime_log.err
[2026-04-14 04:00:35] -rw------- 1 boinc boinc       657 Apr 14 04:00 bdcf8fca4c65.diag
[2026-04-14 04:00:35] -rw-r--r-- 1 boinc boinc     12642 Apr 14 04:00 stderr.txt
[2026-04-14 04:00:35] HITS file was successfully produced:
[2026-04-14 04:00:35] -rw------- 1 boinc boinc 190395737 Apr 14 03:59 shared/HITS.pool.root.1
[2026-04-14 04:00:35]  *** Contents of shared directory: ***
[2026-04-14 04:00:35] total 406988
[2026-04-14 04:00:35] -rw-r--r-- 2 boinc boinc 224902355 Apr 14 02:28 ATLAS.root_0
[2026-04-14 04:00:35] -rw-r--r-- 2 boinc boinc    656925 Apr 14 02:28 input.tar.gz
[2026-04-14 04:00:35] -rw-r--r-- 2 boinc boinc     15665 Apr 14 02:28 start_atlas.sh
[2026-04-14 04:00:35] -rw------- 1 boinc boinc 190395737 Apr 14 03:59 HITS.pool.root.1
[2026-04-14 04:00:35] -rw------- 1 boinc boinc    778240 Apr 14 04:00 result.tar.gz
04:00:36 (977697): run_atlas exited; CPU time 15392.442060
04:00:36 (977697): called boinc_finish(0)

</stderr_txt>
]]>

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