Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:26:04 (1315): wrapper (7.7.26015): starting
08:26:04 (1315): wrapper: running run_atlas (--nthreads 12)
[2026-04-13 08:26:04] Arguments: --nthreads 12
[2026-04-13 08:26:04] Threads: 12
[2026-04-13 08:26:04] Checking for CVMFS
[2026-04-13 08:26:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 08:26:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 08:26:04] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 08:26:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 08:26:04] 2.11.2.0 2945 486399 90576 158416 2 49 11022994 20275200 1 130560 2 206737687 99.950 27775830 18323 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-13 08:26:04] CVMFS is ok
[2026-04-13 08:26:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-13 08:26:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-13 08:26:04] Further information can be found at the LHC@home message board.
[2026-04-13 08:26:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 08:26:04] Checking for apptainer binary...
[2026-04-13 08:26:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 08:26:04] Running /usr/bin/apptainer --version
[2026-04-13 08:26:04] apptainer version 1.3.2-1.el7
[2026-04-13 08:26:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 08:26:06] c-205-2.aglt2.org
[2026-04-13 08:26:06] apptainer works
[2026-04-13 08:26:06] Set ATHENA_PROC_NUMBER=12
[2026-04-13 08:26:06] Set ATHENA_CORE_NUMBER=12
[2026-04-13 08:26:06] Starting ATLAS job with PandaID=7089303063
[2026-04-13 08:26:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 09:35:40]  *** The last 200 lines of the pilot log: ***
[2026-04-13 09:35:40]  ddmendpoint_alt=None
[2026-04-13 09:35:40]  direct_access_lan=False
[2026-04-13 09:35:40]  direct_access_wan=False
[2026-04-13 09:35:40]  domain=
[2026-04-13 09:35:40]  filesize=348451
[2026-04-13 09:35:40]  filetype=log
[2026-04-13 09:35:40]  guid=426f7201-6b56-4f40-b00d-13df9f0e85ef
[2026-04-13 09:35:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-13 09:35:40]  is_altstaged=None
[2026-04-13 09:35:40]  is_tar=False
[2026-04-13 09:35:40]  lfn=log.49263200._060870.job.log.tgz.1
[2026-04-13 09:35:40]  mtime=0
[2026-04-13 09:35:40]  protocol_id=None
[2026-04-13 09:35:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-13 09:35:40]  replicas=None
[2026-04-13 09:35:40]  scope=mc23_13p6TeV
[2026-04-13 09:35:40]  status=None
[2026-04-13 09:35:40]  status_code=0
[2026-04-13 09:35:40]  storage_token=
[2026-04-13 09:35:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7089303063/log.49263200._060870.job.log.tgz.1
[2026-04-13 09:35:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/c7/log.49263200._060870.job.log.tgz.1
[2026-04-13 09:35:40]  workdir=None
[2026-04-13 09:35:40] ]
[2026-04-13 09:35:40] 2026-04-13 13:34:30,887 | INFO     | transferring file log.49263200._060870.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7089303063/log.49263200._060870.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-04-13 09:35:40] 2026-04-13 13:34:30,887 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7089303063/log.49263200._060870.job.log.tgz.1 /tmp/boinchome/slots/0/log.49263200._060870.job
[2026-04-13 09:35:40] 2026-04-13 13:34:30,909 | INFO     | adding to output.list: log.49263200._060870.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/c7/log.49263200._060870.job.log.tg
[2026-04-13 09:35:40] 2026-04-13 13:34:30,910 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-13 09:35:40] 2026-04-13 13:34:30,910 | INFO     | summary of transferred files:
[2026-04-13 09:35:40] 2026-04-13 13:34:30,911 | INFO     |  -- lfn=log.49263200._060870.job.log.tgz.1, status_code=0, status=transferred
[2026-04-13 09:35:40] 2026-04-13 13:34:30,911 | INFO     | stage-out finished correctly
[2026-04-13 09:35:40] 2026-04-13 13:34:31,245 | INFO     | monitor loop #314: job 0:7089303063 is in state 'finished'
[2026-04-13 09:35:40] 2026-04-13 13:34:31,246 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-13 09:35:40] 2026-04-13 13:34:31,827 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-13 09:35:40] 2026-04-13 13:34:33,540 | INFO     | job 7089303063 has state=finished
[2026-04-13 09:35:40] 2026-04-13 13:34:33,540 | INFO     | preparing for final server update for job 7089303063 in state='finished'
[2026-04-13 09:35:40] 2026-04-13 13:34:33,541 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7089303063/jobReport.json
[2026-04-13 09:35:40] 2026-04-13 13:34:33,544 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-04-13 09:35:40] 2026-04-13 13:34:33,544 | INFO     | this job has now completed (state=finished)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,544 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,544 | INFO     | log transfer has been attempted: DONE
[2026-04-13 09:35:40] 2026-04-13 13:34:33,545 | INFO     | job 7089303063 has finished - writing final server update
[2026-04-13 09:35:40] 2026-04-13 13:34:33,545 | INFO     | total number of processed events: 400 (read)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,548 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7089303063/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,549 | INFO     | extracted standard info from prmon json
[2026-04-13 09:35:40] 2026-04-13 13:34:33,549 | INFO     | extracted standard memory fields from prmon json
[2026-04-13 09:35:40] 2026-04-13 13:34:33,549 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-13 09:35:40] 2026-04-13 13:34:33,549 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-13 09:35:40] 2026-04-13 13:34:33,551 | INFO     | fitting pss+swap vs Time
[2026-04-13 09:35:40] 2026-04-13 13:34:33,551 | INFO     | sum of square deviations: 66959395.0
[2026-04-13 09:35:40] 2026-04-13 13:34:33,551 | INFO     | sum of deviations: -4132593230.0000005
[2026-04-13 09:35:40] 2026-04-13 13:34:33,551 | INFO     | mean x (centered): 0.0
[2026-04-13 09:35:40] 2026-04-13 13:34:33,551 | INFO     | mean y: 2881577.3333333335
[2026-04-13 09:35:40] 2026-04-13 13:34:33,551 | INFO     | intersect: 2881577.3333333335
[2026-04-13 09:35:40] 2026-04-13 13:34:33,552 | INFO     | chi2: 0.09389584393294366
[2026-04-13 09:35:40] 2026-04-13 13:34:33,552 | INFO     | current memory leak: -61.72 B/s (using 60 data points, chi2=0.09)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,552 | INFO     | could have reported an average CPU frequency of 1706 MHz (6 samples)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,552 | INFO     | ..............................
[2026-04-13 09:35:40] 2026-04-13 13:34:33,552 | INFO     | . Timing measurements:
[2026-04-13 09:35:40] 2026-04-13 13:34:33,552 | INFO     | . get job = 0 s
[2026-04-13 09:35:40] 2026-04-13 13:34:33,553 | INFO     | . initial setup = 7 s
[2026-04-13 09:35:40] 2026-04-13 13:34:33,553 | INFO     | . payload setup = 14 s
[2026-04-13 09:35:40] 2026-04-13 13:34:33,553 | INFO     | . stage-in = 0 s
[2026-04-13 09:35:40] 2026-04-13 13:34:33,553 | INFO     | . payload execution = 4052 s
[2026-04-13 09:35:40] 2026-04-13 13:34:33,553 | INFO     | . stage-out = 0 s
[2026-04-13 09:35:40] 2026-04-13 13:34:33,553 | INFO     | . log creation = 0 s
[2026-04-13 09:35:40] 2026-04-13 13:34:33,553 | INFO     | ..............................
[2026-04-13 09:35:40] 2026-04-13 13:34:33,630 | INFO     | 
[2026-04-13 09:35:40] 2026-04-13 13:34:33,630 | INFO     | job summary report
[2026-04-13 09:35:40] 2026-04-13 13:34:33,630 | INFO     | --------------------------------------------------
[2026-04-13 09:35:40] 2026-04-13 13:34:33,630 | INFO     | PanDA job id: 7089303063
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | task id: 49263200
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | errors: (none)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | pilot state: finished 
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | transexitcode: 0
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | exeerrorcode: 0
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | exeerrordiag: 
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | exitcode: 0
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | exitmsg: OK
[2026-04-13 09:35:40] 2026-04-13 13:34:33,631 | INFO     | cpuconsumptiontime: 44120 s
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | nevents: 400
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | neventsw: 0
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | pid: 9590
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | pgrp: 9590
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | corecount: 12
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | event service: False
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | sizes: {0: 2279719, 1: 2281548, 12: 2281548, 4070: 2307464, 4071: 2316462, 4072: 2316518, 4074: 2316840}
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | --------------------------------------------------
[2026-04-13 09:35:40] 2026-04-13 13:34:33,632 | INFO     | 
[2026-04-13 09:35:40] 2026-04-13 13:34:33,633 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-04-13 09:35:40] 2026-04-13 13:34:33,661 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,662 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,662 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,662 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,662 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,662 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,663 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,663 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,663 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,663 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,663 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,663 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,664 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,664 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,664 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,664 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,664 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,664 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,665 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 09:35:40] 2026-04-13 13:34:33,665 | INFO     | job 7089303063 has completed (purged errors)
[2026-04-13 09:35:40] 2026-04-13 13:34:33,665 | INFO     | overall cleanup function is called
[2026-04-13 09:35:40] 2026-04-13 13:34:34,673 | INFO     | --- collectZombieJob: --- 10, [9590]
[2026-04-13 09:35:40] 2026-04-13 13:34:34,673 | INFO     | zombie collector waiting for pid 9590
[2026-04-13 09:35:40] 2026-04-13 13:34:34,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 09:35:40] 2026-04-13 13:34:34,674 | INFO     | collected zombie processes
[2026-04-13 09:35:40] 2026-04-13 13:34:34,674 | INFO     | will attempt to kill all subprocesses of pid=9590
[2026-04-13 09:35:40] 2026-04-13 13:34:34,762 | INFO     | process IDs to be killed: [9590] (in reverse order)
[2026-04-13 09:35:40] 2026-04-13 13:34:34,813 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 09:35:40] 2026-04-13 13:34:34,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 09:35:40] 2026-04-13 13:34:34,817 | INFO     | did not find any defunct processes belonging to 9590
[2026-04-13 09:35:40] 2026-04-13 13:34:34,820 | INFO     | did not find any defunct processes belonging to 9590
[2026-04-13 09:35:40] 2026-04-13 13:34:34,821 | INFO     | Ready for new job
[2026-04-13 09:35:40] 2026-04-13 13:34:34,821 | INFO     | **************************************
[2026-04-13 09:35:40] 2026-04-13 13:34:34,822 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 09:35:40] 2026-04-13 13:34:34,822 | INFO     | **************************************
[2026-04-13 09:35:40] 2026-04-13 13:34:34,822 | INFO     | 
[2026-04-13 09:35:40] 2026-04-13 13:34:34,822 | INFO     | architecture information:
[2026-04-13 09:35:40] 2026-04-13 13:34:34,823 | INFO     | executing command: cat /etc/os-release
[2026-04-13 09:35:40] 2026-04-13 13:34:34,838 | INFO     | cat /etc/os-release:
[2026-04-13 09:35:40] NAME="CentOS Linux"
[2026-04-13 09:35:40] VERSION="7 (Core)"
[2026-04-13 09:35:40] ID="centos"
[2026-04-13 09:35:40] ID_LIKE="rhel fedora"
[2026-04-13 09:35:40] VERSION_ID="7"
[2026-04-13 09:35:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 09:35:40] ANSI_COLOR="0;31"
[2026-04-13 09:35:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 09:35:40] HOME_URL="https://www.centos.org/"
[2026-04-13 09:35:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 09:35:40] 
[2026-04-13 09:35:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 09:35:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 09:35:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 09:35:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 09:35:40] 
[2026-04-13 09:35:40] 2026-04-13 13:34:34,839 | INFO     | **************************************
[2026-04-13 09:35:40] 2026-04-13 13:34:35,342 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-04-13 09:35:40] 2026-04-13 13:34:35,358 | INFO     | sufficient remaining disk space (29386342400 B)
[2026-04-13 09:35:40] 2026-04-13 13:34:35,358 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 09:35:40] 2026-04-13 13:34:35,358 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 09:35:40] 2026-04-13 13:34:35,358 | INFO     | update_server=False
[2026-04-13 09:35:40] 2026-04-13 13:34:35,359 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 09:35:40] 2026-04-13 13:34:35,359 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 09:35:40] 2026-04-13 13:34:35,359 | INFO     | aborting loop
[2026-04-13 09:35:40] 2026-04-13 13:34:35,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 09:35:40] 2026-04-13 13:34:35,773 | INFO     | all data control threads have been joined
[2026-04-13 09:35:40] 2026-04-13 13:34:36,226 | INFO     | all payload control threads have been joined
[2026-04-13 09:35:40] 2026-04-13 13:34:36,364 | INFO     | [job] retrieve thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:36,365 | INFO     | [job] job monitor thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:36,365 | INFO     | [job] queue monitor thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:36,496 | INFO     | [payload] failed_post thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:36,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 09:35:40] 2026-04-13 13:34:36,585 | INFO     | all job control threads have been joined
[2026-04-13 09:35:40] 2026-04-13 13:34:36,646 | INFO     | [data] copytool_in thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:36,777 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:36,778 | INFO     | [data] control thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:37,231 | INFO     | [payload] control thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:37,258 | INFO     | [payload] validate_post thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:37,332 | INFO     | [job] validate thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:37,591 | INFO     | [job] control thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:37,618 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:37,799 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:37,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 09:35:40] 2026-04-13 13:34:38,507 | INFO     | [data] copytool_out thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:41,919 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:34:45,497 | INFO     | job.realtimelogging is not enabled
[2026-04-13 09:35:40] 2026-04-13 13:34:46,503 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 09:35:40] 2026-04-13 13:35:06,197 | INFO     | PID=5201 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-13 09:35:40] 2026-04-13 13:35:06,198 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 09:35:40] 2026-04-13 13:35:06,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 09:35:40] 2026-04-13 13:35:06,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 09:35:40] 2026-04-13 13:35:33,911 | INFO     | [monitor] cgroup control has ended
[2026-04-13 09:35:40] 2026-04-13 13:35:34,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411070973760)>', '<ExcThread(monitor, started 140410307462912)>']
[2026-04-13 09:35:40] 2026-04-13 13:35:35,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 09:35:40] 2026-04-13 13:35:35,353 | INFO     | [monitor] control thread has ended
[2026-04-13 09:35:40] 2026-04-13 13:35:39,816 | INFO     | all workflow threads have been joined
[2026-04-13 09:35:40] 2026-04-13 13:35:39,817 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 09:35:40] 2026-04-13 13:35:39,817 | INFO     | traces error code: 0
[2026-04-13 09:35:40] 2026-04-13 13:35:39,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 09:35:40] 2026-04-13 13:35:39,907 [wrapper] ==== pilot stdout END ====
[2026-04-13 09:35:40] 2026-04-13 13:35:39,911 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 09:35:40] 2026-04-13 13:35:39,915 [wrapper] pilotpid: 5201
[2026-04-13 09:35:40] 2026-04-13 13:35:39,919 [wrapper] Pilot exit status: 0
[2026-04-13 09:35:40] 2026-04-13 13:35:39,935 [wrapper] pandaids: 7089303063
[2026-04-13 09:35:40] 2026-04-13 13:35:39,982 [wrapper] cleanup supervisor_pilot   305 5202
[2026-04-13 09:35:40] 2026-04-13 13:35:39,986 [wrapper] Test setup, not cleaning
[2026-04-13 09:35:40] 2026-04-13 13:35:39,990 [wrapper] apfmon messages muted
[2026-04-13 09:35:40] 2026-04-13 13:35:39,993 [wrapper] ==== wrapper stdout END ====
[2026-04-13 09:35:40] 2026-04-13 13:35:39,997 [wrapper] ==== wrapper stderr END ====
[2026-04-13 09:35:40]  *** Error codes and diagnostics ***
[2026-04-13 09:35:40]     "exeErrorCode": 0,
[2026-04-13 09:35:40]     "pilotErrorCode": 0,
[2026-04-13 09:35:40]  *** Listing of results directory ***
[2026-04-13 09:35:40] total 407800
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas    644190 Apr 13 04:55 pilot3.tar.gz
[2026-04-13 09:35:40] -rwx------ 1 boincer umatlas     36322 Apr 13 04:59 runpilot2-wrapper.sh
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas      5094 Apr 13 05:15 queuedata.json
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas       100 Apr 13 08:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 09:35:40] -rwxr-xr-x 1 boincer umatlas      7986 Apr 13 08:26 run_atlas
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas       105 Apr 13 08:26 job.xml
[2026-04-13 09:35:40] -rw-r--r-- 2 boincer umatlas 224892464 Apr 13 08:26 EVNT.49263198._001702.pool.root.1
[2026-04-13 09:35:40] -rw-r--r-- 2 boincer umatlas     15665 Apr 13 08:26 start_atlas.sh
[2026-04-13 09:35:40] drwxrwx--x 2 boincer umatlas      4096 Apr 13 08:26 shared
[2026-04-13 09:35:40] -rw-r--r-- 2 boincer umatlas    656935 Apr 13 08:26 input.tar.gz
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas         0 Apr 13 08:26 boinc_lockfile
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas      2576 Apr 13 08:26 pandaJob.out
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas        57 Apr 13 08:26 setup.sh.local
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas    997743 Apr 13 08:26 agis_schedconf.cvmfs.json
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas   1511579 Apr 13 08:26 agis_ddmendpoints.agis.ALL.json
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas       444 Apr 13 08:26 workernode_map.json
[2026-04-13 09:35:40] drwx------ 5 boincer umatlas      4096 Apr 13 08:26 pilot3
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas      5867 Apr 13 09:29 init_data.xml
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas 187125932 Apr 13 09:34 HITS.49263200._060870.pool.root.1
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas        95 Apr 13 09:34 pilot_heartbeat.json
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas      1045 Apr 13 09:34 memory_monitor_summary.json
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas       487 Apr 13 09:34 boinc_task_state.xml
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas    348451 Apr 13 09:34 log.49263200._060870.job.log.tgz.1
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas      6436 Apr 13 09:34 heartbeat_new.json
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas      6327 Apr 13 09:34 heartbeat.json
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas      8192 Apr 13 09:35 boinc_mmap_file
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas        27 Apr 13 09:35 wrapper_checkpoint.txt
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas      4812 Apr 13 09:35 pilotlog.txt
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas    402608 Apr 13 09:35 log.49263200._060870.job.log.1
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas       357 Apr 13 09:35 output.list
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas       410 Apr 13 09:35 runtime_log
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas    768000 Apr 13 09:35 result.tar.gz
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas      8960 Apr 13 09:35 runtime_log.err
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas       658 Apr 13 09:35 b08acc03ed93.diag
[2026-04-13 09:35:40] -rw-r--r-- 1 boincer umatlas     20803 Apr 13 09:35 stderr.txt
[2026-04-13 09:35:40] HITS file was successfully produced:
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas 187125932 Apr 13 09:34 shared/HITS.pool.root.1
[2026-04-13 09:35:40]  *** Contents of shared directory: ***
[2026-04-13 09:35:40] total 403784
[2026-04-13 09:35:40] -rw-r--r-- 2 boincer umatlas 224892464 Apr 13 08:26 ATLAS.root_0
[2026-04-13 09:35:40] -rw-r--r-- 2 boincer umatlas     15665 Apr 13 08:26 start_atlas.sh
[2026-04-13 09:35:40] -rw-r--r-- 2 boincer umatlas    656935 Apr 13 08:26 input.tar.gz
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas 187125932 Apr 13 09:34 HITS.pool.root.1
[2026-04-13 09:35:40] -rw------- 1 boincer umatlas    768000 Apr 13 09:35 result.tar.gz
09:35:41 (1315): run_atlas exited; CPU time 44096.614750
09:35:41 (1315): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN