Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:12:12 (2809352): wrapper (7.7.26015): starting
19:12:12 (2809352): wrapper: running run_atlas (--nthreads 3)
[2026-04-13 19:12:12] Arguments: --nthreads 3
[2026-04-13 19:12:12] Threads: 3
[2026-04-13 19:12:12] Checking for CVMFS
[2026-04-13 19:12:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 19:12:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 19:12:13] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 19:12:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 19:12:13] 2.9.2.0 2104384 4521 83844 158423 1 50 25573828 36864001 0 130560 0 2694039 99.988 170398 13666 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-13 19:12:13] CVMFS is ok
[2026-04-13 19:12:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-13 19:12:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-13 19:12:13] Further information can be found at the LHC@home message board.
[2026-04-13 19:12:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 19:12:13] Checking for apptainer binary...
[2026-04-13 19:12:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 19:12:13] Running /usr/bin/apptainer --version
[2026-04-13 19:12:13] apptainer version 1.4.1-1.1
[2026-04-13 19:12:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 19:12:13] thA385
[2026-04-13 19:12:13] apptainer works
[2026-04-13 19:12:13] Set ATHENA_PROC_NUMBER=3
[2026-04-13 19:12:13] Set ATHENA_CORE_NUMBER=3
[2026-04-13 19:12:13] Starting ATLAS job with PandaID=7088964578
[2026-04-13 19:12:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 20:36:37]  *** The last 200 lines of the pilot log: ***
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | job 7088964578 has completed (purged errors)
[2026-04-13 20:36:37] 2026-04-13 18:36:03,714 | INFO     | overall cleanup function is called
[2026-04-13 20:36:37] 2026-04-13 18:36:04,718 | INFO     | --- collectZombieJob: --- 10, [2817828]
[2026-04-13 20:36:37] 2026-04-13 18:36:04,719 | INFO     | zombie collector waiting for pid 2817828
[2026-04-13 20:36:37] 2026-04-13 18:36:04,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 20:36:37] 2026-04-13 18:36:04,719 | INFO     | collected zombie processes
[2026-04-13 20:36:37] 2026-04-13 18:36:04,719 | INFO     | will attempt to kill all subprocesses of pid=2817828
[2026-04-13 20:36:37] 2026-04-13 18:36:04,764 | INFO     | process IDs to be killed: [2817828] (in reverse order)
[2026-04-13 20:36:37] 2026-04-13 18:36:04,791 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 20:36:37] 2026-04-13 18:36:04,791 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 20:36:37] 2026-04-13 18:36:04,792 | INFO     | did not find any defunct processes belonging to 2817828
[2026-04-13 20:36:37] 2026-04-13 18:36:04,794 | INFO     | did not find any defunct processes belonging to 2817828
[2026-04-13 20:36:37] 2026-04-13 18:36:04,794 | INFO     | Ready for new job
[2026-04-13 20:36:37] 2026-04-13 18:36:04,794 | INFO     | **************************************
[2026-04-13 20:36:37] 2026-04-13 18:36:04,794 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 20:36:37] 2026-04-13 18:36:04,794 | INFO     | **************************************
[2026-04-13 20:36:37] 2026-04-13 18:36:04,794 | INFO     | 
[2026-04-13 20:36:37] 2026-04-13 18:36:04,795 | INFO     | architecture information:
[2026-04-13 20:36:37] 2026-04-13 18:36:04,795 | INFO     | executing command: cat /etc/os-release
[2026-04-13 20:36:37] 2026-04-13 18:36:04,804 | INFO     | cat /etc/os-release:
[2026-04-13 20:36:37] NAME="CentOS Linux"
[2026-04-13 20:36:37] VERSION="7 (Core)"
[2026-04-13 20:36:37] ID="centos"
[2026-04-13 20:36:37] ID_LIKE="rhel fedora"
[2026-04-13 20:36:37] VERSION_ID="7"
[2026-04-13 20:36:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 20:36:37] ANSI_COLOR="0;31"
[2026-04-13 20:36:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 20:36:37] HOME_URL="https://www.centos.org/"
[2026-04-13 20:36:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 20:36:37] 
[2026-04-13 20:36:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 20:36:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 20:36:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 20:36:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 20:36:37] 
[2026-04-13 20:36:37] 2026-04-13 18:36:04,804 | INFO     | **************************************
[2026-04-13 20:36:37] 2026-04-13 18:36:05,307 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-13 20:36:37] 2026-04-13 18:36:05,321 | INFO     | sufficient remaining disk space (379133624320 B)
[2026-04-13 20:36:37] 2026-04-13 18:36:05,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 20:36:37] 2026-04-13 18:36:05,321 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 20:36:37] 2026-04-13 18:36:05,321 | INFO     | update_server=False
[2026-04-13 20:36:37] 2026-04-13 18:36:05,321 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 20:36:37] 2026-04-13 18:36:05,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 20:36:37] 2026-04-13 18:36:05,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 20:36:37] 2026-04-13 18:36:05,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 20:36:37] 2026-04-13 18:36:05,730 | INFO     | aborting loop
[2026-04-13 20:36:37] 2026-04-13 18:36:05,809 | INFO     | job.realtimelogging is not enabled
[2026-04-13 20:36:37] 2026-04-13 18:36:05,878 | INFO     | all payload control threads have been joined
[2026-04-13 20:36:37] 2026-04-13 18:36:05,926 | INFO     | all job control threads have been joined
[2026-04-13 20:36:37] 2026-04-13 18:36:06,016 | INFO     | all data control threads have been joined
[2026-04-13 20:36:37] 2026-04-13 18:36:06,325 | INFO     | [job] retrieve thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,327 | INFO     | [job] queue monitor thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,514 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,545 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,571 | INFO     | [payload] failed_post thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,733 | INFO     | [job] job monitor thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,777 | INFO     | [data] copytool_in thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,814 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,883 | INFO     | [payload] control thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,926 | INFO     | [job] control thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,959 | INFO     | [job] validate thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:06,975 | INFO     | [payload] validate_post thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:07,021 | INFO     | [data] control thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:07,328 | INFO     | [data] copytool_out thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:07,331 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:08,062 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 20:36:37] 2026-04-13 18:36:12,069 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 20:36:37] 2026-04-13 18:36:30,827 | INFO     | [monitor] cgroup control has ended
[2026-04-13 20:36:37] 2026-04-13 18:36:32,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647226111808)>', '<ExcThread(monitor, started 139646868633344)>']
[2026-04-13 20:36:37] 2026-04-13 18:36:35,628 | INFO     | PID=2813395 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-13 20:36:37] 2026-04-13 18:36:35,628 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 20:36:37] 2026-04-13 18:36:35,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 20:36:37] 2026-04-13 18:36:35,628 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 20:36:37] 2026-04-13 18:36:35,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 20:36:37] 2026-04-13 18:36:35,628 | INFO     | [monitor] control thread has ended
[2026-04-13 20:36:37] 2026-04-13 18:36:37,449 | INFO     | all workflow threads have been joined
[2026-04-13 20:36:37] 2026-04-13 18:36:37,449 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 20:36:37] 2026-04-13 18:36:37,449 | INFO     | traces error code: 0
[2026-04-13 20:36:37] 2026-04-13 18:36:37,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 20:36:37] 2026-04-13 18:36:37,500 [wrapper] ==== pilot stdout END ====
[2026-04-13 20:36:37] 2026-04-13 18:36:37,502 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 20:36:37] 2026-04-13 18:36:37,505 [wrapper] pilotpid: 2813395
[2026-04-13 20:36:37] 2026-04-13 18:36:37,507 [wrapper] Pilot exit status: 0
[2026-04-13 20:36:37] 2026-04-13 18:36:37,515 [wrapper] pandaids: 7088964578
[2026-04-13 20:36:37] 2026-04-13 18:36:37,533 [wrapper] cleanup supervisor_pilot 2823581 2813396
[2026-04-13 20:36:37] 2026-04-13 18:36:37,535 [wrapper] Test setup, not cleaning
[2026-04-13 20:36:37] 2026-04-13 18:36:37,538 [wrapper] apfmon messages muted
[2026-04-13 20:36:37] 2026-04-13 18:36:37,540 [wrapper] ==== wrapper stdout END ====
[2026-04-13 20:36:37] 2026-04-13 18:36:37,543 [wrapper] ==== wrapper stderr END ====
[2026-04-13 20:36:37]  *** Error codes and diagnostics ***
[2026-04-13 20:36:37]     "exeErrorCode": 0,
[2026-04-13 20:36:37]     "pilotErrorCode": 0,
[2026-04-13 20:36:37]  *** Listing of results directory ***
[2026-04-13 20:36:37] total 421248
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc    644190 Apr 13 07:03 pilot3.tar.gz
[2026-04-13 20:36:37] -rwx------ 1 boinc boinc     36322 Apr 13 07:06 runpilot2-wrapper.sh
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc      5094 Apr 13 07:09 queuedata.json
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc       100 Apr 13 19:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 20:36:37] -rwxr-xr-x 1 boinc boinc      7986 Apr 13 19:12 run_atlas
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc       105 Apr 13 19:12 job.xml
[2026-04-13 20:36:37] -rw-r--r-- 2 boinc boinc 226097650 Apr 13 19:12 EVNT.49263189._001765.pool.root.1
[2026-04-13 20:36:37] -rw-r--r-- 2 boinc boinc    656928 Apr 13 19:12 input.tar.gz
[2026-04-13 20:36:37] -rw-r--r-- 2 boinc boinc     15665 Apr 13 19:12 start_atlas.sh
[2026-04-13 20:36:37] drwxrwx--x 2 boinc boinc      4096 Apr 13 19:12 shared
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc         0 Apr 13 19:12 boinc_setup_complete
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc      6361 Apr 13 19:12 init_data.xml
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc         0 Apr 13 19:12 boinc_lockfile
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc      2578 Apr 13 19:12 pandaJob.out
[2026-04-13 20:36:37] -rw------- 1 boinc boinc    997526 Apr 13 19:12 agis_schedconf.cvmfs.json
[2026-04-13 20:36:37] -rw------- 1 boinc boinc   1511579 Apr 13 19:12 agis_ddmendpoints.agis.ALL.json
[2026-04-13 20:36:37] -rw------- 1 boinc boinc       423 Apr 13 19:12 workernode_map.json
[2026-04-13 20:36:37] drwx------ 5 boinc boinc      4096 Apr 13 19:12 pilot3
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc       487 Apr 13 20:35 boinc_task_state.xml
[2026-04-13 20:36:37] -rw------- 1 boinc boinc 199769669 Apr 13 20:35 HITS.49263191._065307.pool.root.1
[2026-04-13 20:36:37] -rw------- 1 boinc boinc        95 Apr 13 20:35 pilot_heartbeat.json
[2026-04-13 20:36:37] -rw------- 1 boinc boinc      1019 Apr 13 20:35 memory_monitor_summary.json
[2026-04-13 20:36:37] -rw------- 1 boinc boinc    233785 Apr 13 20:36 log.49263191._065307.job.log.tgz.1
[2026-04-13 20:36:37] -rw------- 1 boinc boinc      6321 Apr 13 20:36 heartbeat_new.json
[2026-04-13 20:36:37] -rw------- 1 boinc boinc      6212 Apr 13 20:36 heartbeat.json
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc      8192 Apr 13 20:36 boinc_mmap_file
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc        27 Apr 13 20:36 wrapper_checkpoint.txt
[2026-04-13 20:36:37] -rw------- 1 boinc boinc      4819 Apr 13 20:36 pilotlog.txt
[2026-04-13 20:36:37] -rw------- 1 boinc boinc    490660 Apr 13 20:36 log.49263191._065307.job.log.1
[2026-04-13 20:36:37] -rw------- 1 boinc boinc       357 Apr 13 20:36 output.list
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc       410 Apr 13 20:36 runtime_log
[2026-04-13 20:36:37] -rw------- 1 boinc boinc    737280 Apr 13 20:36 result.tar.gz
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc      8518 Apr 13 20:36 runtime_log.err
[2026-04-13 20:36:37] -rw------- 1 boinc boinc       657 Apr 13 20:36 79caf0247c91.diag
[2026-04-13 20:36:37] -rw-r--r-- 1 boinc boinc     11599 Apr 13 20:36 stderr.txt
[2026-04-13 20:36:37] HITS file was successfully produced:
[2026-04-13 20:36:37] -rw------- 1 boinc boinc 199769669 Apr 13 20:35 shared/HITS.pool.root.1
[2026-04-13 20:36:37]  *** Contents of shared directory: ***
[2026-04-13 20:36:37] total 417276
[2026-04-13 20:36:37] -rw-r--r-- 2 boinc boinc 226097650 Apr 13 19:12 ATLAS.root_0
[2026-04-13 20:36:37] -rw-r--r-- 2 boinc boinc    656928 Apr 13 19:12 input.tar.gz
[2026-04-13 20:36:37] -rw-r--r-- 2 boinc boinc     15665 Apr 13 19:12 start_atlas.sh
[2026-04-13 20:36:37] -rw------- 1 boinc boinc 199769669 Apr 13 20:35 HITS.pool.root.1
[2026-04-13 20:36:37] -rw------- 1 boinc boinc    737280 Apr 13 20:36 result.tar.gz
20:36:38 (2809352): run_atlas exited; CPU time 14133.331338
20:36:38 (2809352): called boinc_finish(0)

</stderr_txt>
]]>

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