Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:35:46 (1034): wrapper (7.7.26015): starting
13:35:46 (1034): wrapper: running run_atlas (--nthreads 8)
[2026-04-13 13:35:46] Arguments: --nthreads 8
[2026-04-13 13:35:46] Threads: 8
[2026-04-13 13:35:46] Checking for CVMFS
[2026-04-13 13:35:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 13:35:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 13:35:47] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 13:35:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 13:35:47] 2.11.2.0 18344 170705 132576 158415 1 105 24799953 25165825 3217 130560 156 48753430 99.817 43048504 1339 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-13 13:35:47] CVMFS is ok
[2026-04-13 13:35:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 13:35:47] Checking for apptainer binary...
[2026-04-13 13:35:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 13:35:47] Running /usr/bin/apptainer --version
[2026-04-13 13:35:47] apptainer version 1.3.2-1.el7
[2026-04-13 13:35:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 13:35:48] cg-vwn430.simple-grid.lan
[2026-04-13 13:35:48] apptainer works
[2026-04-13 13:35:48] Set ATHENA_PROC_NUMBER=8
[2026-04-13 13:35:48] Set ATHENA_CORE_NUMBER=8
[2026-04-13 13:35:48] Starting ATLAS job with PandaID=7088694304
[2026-04-13 13:35:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 18:41:57]  *** The last 200 lines of the pilot log: ***
[2026-04-13 18:41:57] 2026-04-13 16:40:51,441 | INFO     | reading metadata from: /var/lib/boinc/slots/6/PanDA_Pilot-7088694304/jobReport.json
[2026-04-13 18:41:57] 2026-04-13 16:40:51,443 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/6/workernode_map.json
[2026-04-13 18:41:57] 2026-04-13 16:40:51,444 | INFO     | this job has now completed (state=finished)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,444 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,444 | INFO     | log transfer has been attempted: DONE
[2026-04-13 18:41:57] 2026-04-13 16:40:51,444 | INFO     | job 7088694304 has finished - writing final server update
[2026-04-13 18:41:57] 2026-04-13 16:40:51,444 | INFO     | total number of processed events: 400 (read)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,446 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7088694304/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,447 | INFO     | extracted standard info from prmon json
[2026-04-13 18:41:57] 2026-04-13 16:40:51,447 | INFO     | extracted standard memory fields from prmon json
[2026-04-13 18:41:57] 2026-04-13 16:40:51,448 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-13 18:41:57] 2026-04-13 16:40:51,448 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-13 18:41:57] 2026-04-13 16:40:51,453 | INFO     | fitting pss+swap vs Time
[2026-04-13 18:41:57] 2026-04-13 16:40:51,454 | INFO     | sum of square deviations: 8288713550.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,457 | INFO     | sum of deviations: -9726280725.000013
[2026-04-13 18:41:57] 2026-04-13 16:40:51,457 | INFO     | mean x (centered): 0.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,457 | INFO     | mean y: 2513933.913043478
[2026-04-13 18:41:57] 2026-04-13 16:40:51,458 | INFO     | intersect: 2513933.913043478
[2026-04-13 18:41:57] 2026-04-13 16:40:51,458 | INFO     | chi2: 1.7723514941947323
[2026-04-13 18:41:57] 2026-04-13 16:40:51,459 | INFO     | sum of square deviations: 7879803557.5
[2026-04-13 18:41:57] 2026-04-13 16:40:51,462 | INFO     | sum of deviations: -9587273955.49997
[2026-04-13 18:41:57] 2026-04-13 16:40:51,462 | INFO     | mean x (centered): 0.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,462 | INFO     | mean y: 2513985.758503401
[2026-04-13 18:41:57] 2026-04-13 16:40:51,462 | INFO     | intersect: 2513985.758503401
[2026-04-13 18:41:57] 2026-04-13 16:40:51,463 | INFO     | chi2: 1.7719577710772119
[2026-04-13 18:41:57] 2026-04-13 16:40:51,463 | INFO     | current chi2=1.7719577710772119 (change=0.022214731040091057 %)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,463 | INFO     | right removable region: 293
[2026-04-13 18:41:57] 2026-04-13 16:40:51,463 | INFO     | sum of square deviations: 7879803557.5
[2026-04-13 18:41:57] 2026-04-13 16:40:51,466 | INFO     | sum of deviations: -57339545793.999985
[2026-04-13 18:41:57] 2026-04-13 16:40:51,466 | INFO     | mean x (centered): 0.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,467 | INFO     | mean y: 2531559.0816326533
[2026-04-13 18:41:57] 2026-04-13 16:40:51,467 | INFO     | intersect: 2531559.0816326533
[2026-04-13 18:41:57] 2026-04-13 16:40:51,467 | INFO     | chi2: 0.23144581580796736
[2026-04-13 18:41:57] 2026-04-13 16:40:51,467 | INFO     | current chi2=0.23144581580796736 (change=86.94131403584115 %)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,468 | INFO     | sum of square deviations: 7484568240.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,471 | INFO     | sum of deviations: -54889928229.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,471 | INFO     | mean x (centered): 0.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,471 | INFO     | mean y: 2530593.5051903115
[2026-04-13 18:41:57] 2026-04-13 16:40:51,471 | INFO     | intersect: 2530593.5051903115
[2026-04-13 18:41:57] 2026-04-13 16:40:51,472 | INFO     | chi2: 0.2171639742359087
[2026-04-13 18:41:57] 2026-04-13 16:40:51,472 | INFO     | current chi2=0.2171639742359087 (change=6.170706315083456 %)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,472 | INFO     | left removable region: 10
[2026-04-13 18:41:57] 2026-04-13 16:40:51,472 | INFO     | sum of square deviations: 7028008982.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,475 | INFO     | sum of deviations: -53847741277.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,475 | INFO     | mean x (centered): 0.0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,475 | INFO     | mean y: 2531011.296819788
[2026-04-13 18:41:57] 2026-04-13 16:40:51,475 | INFO     | intersect: 2531011.296819788
[2026-04-13 18:41:57] 2026-04-13 16:40:51,476 | INFO     | chi2: 0.21513387414670385
[2026-04-13 18:41:57] 2026-04-13 16:40:51,476 | INFO     | current memory leak: -7.66 B/s (using 283 data points, chi2=0.22)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,477 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,477 | INFO     | ..............................
[2026-04-13 18:41:57] 2026-04-13 16:40:51,477 | INFO     | . Timing measurements:
[2026-04-13 18:41:57] 2026-04-13 16:40:51,477 | INFO     | . get job = 0 s
[2026-04-13 18:41:57] 2026-04-13 16:40:51,477 | INFO     | . initial setup = 9 s
[2026-04-13 18:41:57] 2026-04-13 16:40:51,478 | INFO     | . payload setup = 17 s
[2026-04-13 18:41:57] 2026-04-13 16:40:51,478 | INFO     | . stage-in = 0 s
[2026-04-13 18:41:57] 2026-04-13 16:40:51,478 | INFO     | . payload execution = 18246 s
[2026-04-13 18:41:57] 2026-04-13 16:40:51,478 | INFO     | . stage-out = 1 s
[2026-04-13 18:41:57] 2026-04-13 16:40:51,478 | INFO     | . log creation = 0 s
[2026-04-13 18:41:57] 2026-04-13 16:40:51,478 | INFO     | ..............................
[2026-04-13 18:41:57] 2026-04-13 16:40:51,590 | INFO     | 
[2026-04-13 18:41:57] 2026-04-13 16:40:51,590 | INFO     | job summary report
[2026-04-13 18:41:57] 2026-04-13 16:40:51,590 | INFO     | --------------------------------------------------
[2026-04-13 18:41:57] 2026-04-13 16:40:51,590 | INFO     | PanDA job id: 7088694304
[2026-04-13 18:41:57] 2026-04-13 16:40:51,590 | INFO     | task id: 49645815
[2026-04-13 18:41:57] 2026-04-13 16:40:51,590 | INFO     | errors: (none)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,590 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | pilot state: finished 
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | transexitcode: 0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | exeerrorcode: 0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | exeerrordiag: 
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | exitcode: 0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | exitmsg: OK
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | cpuconsumptiontime: 74232 s
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | nevents: 400
[2026-04-13 18:41:57] 2026-04-13 16:40:51,591 | INFO     | neventsw: 0
[2026-04-13 18:41:57] 2026-04-13 16:40:51,592 | INFO     | pid: 9568
[2026-04-13 18:41:57] 2026-04-13 16:40:51,592 | INFO     | pgrp: 9568
[2026-04-13 18:41:57] 2026-04-13 16:40:51,592 | INFO     | corecount: 8
[2026-04-13 18:41:57] 2026-04-13 16:40:51,592 | INFO     | event service: False
[2026-04-13 18:41:57] 2026-04-13 16:40:51,592 | INFO     | sizes: {0: 2279767, 1: 2281596, 18268: 2313881, 18270: 2322935, 18271: 2323073}
[2026-04-13 18:41:57] 2026-04-13 16:40:51,592 | INFO     | --------------------------------------------------
[2026-04-13 18:41:57] 2026-04-13 16:40:51,592 | INFO     | 
[2026-04-13 18:41:57] 2026-04-13 16:40:51,592 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-04-13 18:41:57] 2026-04-13 16:40:51,631 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,631 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,632 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,632 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,632 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,632 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,632 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,632 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,633 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,634 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,634 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 18:41:57] 2026-04-13 16:40:51,634 | INFO     | job 7088694304 has completed (purged errors)
[2026-04-13 18:41:57] 2026-04-13 16:40:51,634 | INFO     | overall cleanup function is called
[2026-04-13 18:41:57] 2026-04-13 16:40:52,642 | INFO     | --- collectZombieJob: --- 10, [9568]
[2026-04-13 18:41:57] 2026-04-13 16:40:52,643 | INFO     | zombie collector waiting for pid 9568
[2026-04-13 18:41:57] 2026-04-13 16:40:52,643 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 18:41:57] 2026-04-13 16:40:52,643 | INFO     | collected zombie processes
[2026-04-13 18:41:57] 2026-04-13 16:40:52,643 | INFO     | will attempt to kill all subprocesses of pid=9568
[2026-04-13 18:41:57] 2026-04-13 16:40:52,774 | INFO     | process IDs to be killed: [9568] (in reverse order)
[2026-04-13 18:41:57] 2026-04-13 16:40:52,890 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 18:41:57] 2026-04-13 16:40:52,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 18:41:57] 2026-04-13 16:40:52,893 | INFO     | did not find any defunct processes belonging to 9568
[2026-04-13 18:41:57] 2026-04-13 16:40:52,896 | INFO     | did not find any defunct processes belonging to 9568
[2026-04-13 18:41:57] 2026-04-13 16:40:52,897 | INFO     | Ready for new job
[2026-04-13 18:41:57] 2026-04-13 16:40:52,898 | INFO     | **************************************
[2026-04-13 18:41:57] 2026-04-13 16:40:52,899 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 18:41:57] 2026-04-13 16:40:52,899 | INFO     | **************************************
[2026-04-13 18:41:57] 2026-04-13 16:40:52,899 | INFO     | 
[2026-04-13 18:41:57] 2026-04-13 16:40:52,899 | INFO     | pilot is running in a VM
[2026-04-13 18:41:57] 2026-04-13 16:40:52,900 | INFO     | architecture information:
[2026-04-13 18:41:57] 2026-04-13 16:40:52,900 | INFO     | executing command: cat /etc/os-release
[2026-04-13 18:41:57] 2026-04-13 16:40:52,930 | INFO     | cat /etc/os-release:
[2026-04-13 18:41:57] NAME="CentOS Linux"
[2026-04-13 18:41:57] VERSION="7 (Core)"
[2026-04-13 18:41:57] ID="centos"
[2026-04-13 18:41:57] ID_LIKE="rhel fedora"
[2026-04-13 18:41:57] VERSION_ID="7"
[2026-04-13 18:41:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 18:41:57] ANSI_COLOR="0;31"
[2026-04-13 18:41:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 18:41:57] HOME_URL="https://www.centos.org/"
[2026-04-13 18:41:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 18:41:57] 
[2026-04-13 18:41:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 18:41:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 18:41:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 18:41:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 18:41:57] 
[2026-04-13 18:41:57] 2026-04-13 16:40:52,930 | INFO     | **************************************
[2026-04-13 18:41:57] 2026-04-13 16:40:53,432 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-04-13 18:41:57] 2026-04-13 16:40:53,449 | INFO     | sufficient remaining disk space (496491298816 B)
[2026-04-13 18:41:57] 2026-04-13 16:40:53,450 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 18:41:57] 2026-04-13 16:40:53,450 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 18:41:57] 2026-04-13 16:40:53,450 | INFO     | update_server=False
[2026-04-13 18:41:57] 2026-04-13 16:40:53,450 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 18:41:57] 2026-04-13 16:40:53,451 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 18:41:57] 2026-04-13 16:40:53,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 18:41:57] 2026-04-13 16:40:53,984 | WARNING  | process 9568 can no longer be monitored (due to stat problems) - aborting
[2026-04-13 18:41:57] 2026-04-13 16:40:54,058 | INFO     | using path: /var/lib/boinc/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 18:41:57] 2026-04-13 16:40:54,173 | INFO     | number of running child processes to parent process 9568: 1
[2026-04-13 18:41:57] 2026-04-13 16:40:54,173 | INFO     | maximum number of monitored processes: 6
[2026-04-13 18:41:57] 2026-04-13 16:40:54,173 | INFO     | aborting job monitoring since job object (job id=7088694304) has expired
[2026-04-13 18:41:57] 2026-04-13 16:40:54,173 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 18:41:57] 2026-04-13 16:40:54,173 | INFO     | will abort loop
[2026-04-13 18:41:57] 2026-04-13 16:40:54,199 | INFO     | all data control threads have been joined
[2026-04-13 18:41:57] 2026-04-13 16:40:54,205 | INFO     | all payload control threads have been joined
[2026-04-13 18:41:57] 2026-04-13 16:40:54,457 | INFO     | [job] retrieve thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:54,457 | INFO     | [job] queue monitor thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:54,696 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:54,708 | INFO     | [payload] validate_post thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:54,713 | INFO     | all job control threads have been joined
[2026-04-13 18:41:57] 2026-04-13 16:40:54,802 | INFO     | [payload] failed_post thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:54,963 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,170 | INFO     | [job] validate thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,179 | INFO     | [job] job monitor thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,187 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,202 | INFO     | [data] control thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,210 | INFO     | [payload] control thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,412 | INFO     | [data] copytool_in thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,645 | INFO     | [data] copytool_out thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,719 | INFO     | [job] control thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:55,784 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:40:56,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 18:41:57] 2026-04-13 16:41:00,757 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 18:41:57] 2026-04-13 16:41:22,947 | INFO     | PID=5116 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-13 18:41:57] 2026-04-13 16:41:22,947 | INFO     | .. there are 7 such processes running
[2026-04-13 18:41:57] 2026-04-13 16:41:22,947 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 18:41:57] 2026-04-13 16:41:22,961 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 18:41:57] 2026-04-13 16:41:22,961 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 18:41:57] 2026-04-13 16:41:51,099 | INFO     | [monitor] cgroup control has ended
[2026-04-13 18:41:57] 2026-04-13 16:41:51,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140095005296448)>', '<ExcThread(monitor, started 140094434432768)>']
[2026-04-13 18:41:57] 2026-04-13 16:41:52,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 18:41:57] 2026-04-13 16:41:52,083 | INFO     | [monitor] control thread has ended
[2026-04-13 18:41:57] 2026-04-13 16:41:56,928 | INFO     | all workflow threads have been joined
[2026-04-13 18:41:57] 2026-04-13 16:41:56,928 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 18:41:57] 2026-04-13 16:41:56,929 | INFO     | traces error code: 0
[2026-04-13 18:41:57] 2026-04-13 16:41:56,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 18:41:57] 2026-04-13 16:41:57,080 [wrapper] ==== pilot stdout END ====
[2026-04-13 18:41:57] 2026-04-13 16:41:57,089 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 18:41:57] 2026-04-13 16:41:57,093 [wrapper] pilotpid: 5116
[2026-04-13 18:41:57] 2026-04-13 16:41:57,096 [wrapper] Pilot exit status: 0
[2026-04-13 18:41:57] 2026-04-13 16:41:57,118 [wrapper] pandaids: 7088694304
[2026-04-13 18:41:57] 2026-04-13 16:41:57,157 [wrapper] cleanup supervisor_pilot 17419 5117
[2026-04-13 18:41:57] 2026-04-13 16:41:57,181 [wrapper] Test setup, not cleaning
[2026-04-13 18:41:57] 2026-04-13 16:41:57,196 [wrapper] apfmon messages muted
[2026-04-13 18:41:57] 2026-04-13 16:41:57,208 [wrapper] ==== wrapper stdout END ====
[2026-04-13 18:41:57] 2026-04-13 16:41:57,217 [wrapper] ==== wrapper stderr END ====
[2026-04-13 18:41:57]  *** Error codes and diagnostics ***
[2026-04-13 18:41:57]     "exeErrorCode": 0,
[2026-04-13 18:41:57]     "pilotErrorCode": 0,
[2026-04-13 18:41:57]  *** Listing of results directory ***
[2026-04-13 18:41:57] total 423784
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc    644190 Apr 13 03:44 pilot3.tar.gz
[2026-04-13 18:41:57] -rwx------. 1 boinc boinc     36322 Apr 13 03:45 runpilot2-wrapper.sh
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc      5094 Apr 13 03:49 queuedata.json
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc       100 Apr 13 13:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 18:41:57] -rwxr-xr-x. 1 boinc boinc      7986 Apr 13 13:35 run_atlas
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc       105 Apr 13 13:35 job.xml
[2026-04-13 18:41:57] -rw-r--r--. 2 boinc boinc 226803037 Apr 13 13:35 EVNT.48629115._000465.pool.root.1
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc      6306 Apr 13 13:35 init_data.xml
[2026-04-13 18:41:57] -rw-r--r--. 2 boinc boinc     15665 Apr 13 13:35 start_atlas.sh
[2026-04-13 18:41:57] drwxrwx--x. 2 boinc boinc        68 Apr 13 13:35 shared
[2026-04-13 18:41:57] -rw-r--r--. 2 boinc boinc    656949 Apr 13 13:35 input.tar.gz
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc         0 Apr 13 13:35 boinc_lockfile
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc      2629 Apr 13 13:35 pandaJob.out
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc    997740 Apr 13 13:36 agis_schedconf.cvmfs.json
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc       415 Apr 13 13:36 workernode_map.json
[2026-04-13 18:41:57] drwx------. 5 boinc boinc      4096 Apr 13 13:36 pilot3
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc 198922330 Apr 13 18:40 HITS.49645815._011623.pool.root.1
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc       489 Apr 13 18:40 boinc_task_state.xml
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc        95 Apr 13 18:40 pilot_heartbeat.json
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc      1015 Apr 13 18:40 memory_monitor_summary.json
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc   1511579 Apr 13 18:40 agis_ddmendpoints.agis.ALL.json
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc    434177 Apr 13 18:40 log.49645815._011623.job.log.tgz.1
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc      6335 Apr 13 18:40 heartbeat_new.json
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc      6226 Apr 13 18:40 heartbeat.json
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc        28 Apr 13 18:41 wrapper_checkpoint.txt
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc      8192 Apr 13 18:41 boinc_mmap_file
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc      5393 Apr 13 18:41 pilotlog.txt
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc   1656133 Apr 13 18:41 log.49645815._011623.job.log.1
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc       357 Apr 13 18:41 output.list
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc       410 Apr 13 18:41 runtime_log
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc   2109440 Apr 13 18:41 result.tar.gz
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc      8438 Apr 13 18:41 runtime_log.err
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc       656 Apr 13 18:41 4ab85c127ac7.diag
[2026-04-13 18:41:57] -rw-r--r--. 1 boinc boinc     20846 Apr 13 18:41 stderr.txt
[2026-04-13 18:41:57] HITS file was successfully produced:
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc 198922330 Apr 13 18:40 shared/HITS.pool.root.1
[2026-04-13 18:41:57]  *** Contents of shared directory: ***
[2026-04-13 18:41:57] total 418472
[2026-04-13 18:41:57] -rw-r--r--. 2 boinc boinc 226803037 Apr 13 13:35 ATLAS.root_0
[2026-04-13 18:41:57] -rw-r--r--. 2 boinc boinc     15665 Apr 13 13:35 start_atlas.sh
[2026-04-13 18:41:57] -rw-r--r--. 2 boinc boinc    656949 Apr 13 13:35 input.tar.gz
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc 198922330 Apr 13 18:40 HITS.pool.root.1
[2026-04-13 18:41:57] -rw-------. 1 boinc boinc   2109440 Apr 13 18:41 result.tar.gz
18:41:59 (1034): run_atlas exited; CPU time 74472.378811
18:41:59 (1034): called boinc_finish(0)

</stderr_txt>
]]>

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