Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:30:22 (4043930): wrapper (7.7.26015): starting
19:30:22 (4043930): wrapper: running run_atlas (--nthreads 4)
[2026-04-13 19:30:22] Arguments: --nthreads 4
[2026-04-13 19:30:22] Threads: 4
[2026-04-13 19:30:22] Checking for CVMFS
[2026-04-13 19:30:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 19:30:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 19:30:23] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 19:30:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 19:30:23] 2.9.2.0 3030651 5562 99288 158424 2 49 19097607 36864001 0 130560 0 3681009 99.989 221109 13660 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-13 19:30:23] CVMFS is ok
[2026-04-13 19:30:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-13 19:30:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-13 19:30:23] Further information can be found at the LHC@home message board.
[2026-04-13 19:30:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 19:30:23] Checking for apptainer binary...
[2026-04-13 19:30:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 19:30:23] Running /usr/bin/apptainer --version
[2026-04-13 19:30:23] apptainer version 1.4.1-1.1
[2026-04-13 19:30:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 19:30:23] thA317
[2026-04-13 19:30:23] apptainer works
[2026-04-13 19:30:23] Set ATHENA_PROC_NUMBER=4
[2026-04-13 19:30:23] Set ATHENA_CORE_NUMBER=4
[2026-04-13 19:30:23] Starting ATLAS job with PandaID=7088553659
[2026-04-13 19:30:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 20:47:11]  *** The last 200 lines of the pilot log: ***
[2026-04-13 20:47:11] 2026-04-13 18:46:38,412 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 20:47:11] 2026-04-13 18:46:38,413 | INFO     | job 7088553659 has completed (purged errors)
[2026-04-13 20:47:11] 2026-04-13 18:46:38,413 | INFO     | overall cleanup function is called
[2026-04-13 20:47:11] 2026-04-13 18:46:39,419 | INFO     | --- collectZombieJob: --- 10, [4052562]
[2026-04-13 20:47:11] 2026-04-13 18:46:39,419 | INFO     | zombie collector waiting for pid 4052562
[2026-04-13 20:47:11] 2026-04-13 18:46:39,419 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 20:47:11] 2026-04-13 18:46:39,419 | INFO     | collected zombie processes
[2026-04-13 20:47:11] 2026-04-13 18:46:39,419 | INFO     | will attempt to kill all subprocesses of pid=4052562
[2026-04-13 20:47:11] 2026-04-13 18:46:39,469 | INFO     | process IDs to be killed: [4052562] (in reverse order)
[2026-04-13 20:47:11] 2026-04-13 18:46:39,508 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 20:47:11] 2026-04-13 18:46:39,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 20:47:11] 2026-04-13 18:46:39,510 | INFO     | did not find any defunct processes belonging to 4052562
[2026-04-13 20:47:11] 2026-04-13 18:46:39,511 | INFO     | did not find any defunct processes belonging to 4052562
[2026-04-13 20:47:11] 2026-04-13 18:46:39,511 | INFO     | Ready for new job
[2026-04-13 20:47:11] 2026-04-13 18:46:39,512 | INFO     | **************************************
[2026-04-13 20:47:11] 2026-04-13 18:46:39,512 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 20:47:11] 2026-04-13 18:46:39,512 | INFO     | **************************************
[2026-04-13 20:47:11] 2026-04-13 18:46:39,512 | INFO     | 
[2026-04-13 20:47:11] 2026-04-13 18:46:39,513 | INFO     | architecture information:
[2026-04-13 20:47:11] 2026-04-13 18:46:39,513 | INFO     | executing command: cat /etc/os-release
[2026-04-13 20:47:11] 2026-04-13 18:46:39,530 | INFO     | cat /etc/os-release:
[2026-04-13 20:47:11] NAME="CentOS Linux"
[2026-04-13 20:47:11] VERSION="7 (Core)"
[2026-04-13 20:47:11] ID="centos"
[2026-04-13 20:47:11] ID_LIKE="rhel fedora"
[2026-04-13 20:47:11] VERSION_ID="7"
[2026-04-13 20:47:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 20:47:11] ANSI_COLOR="0;31"
[2026-04-13 20:47:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 20:47:11] HOME_URL="https://www.centos.org/"
[2026-04-13 20:47:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 20:47:11] 
[2026-04-13 20:47:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 20:47:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 20:47:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 20:47:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 20:47:11] 
[2026-04-13 20:47:11] 2026-04-13 18:46:39,530 | INFO     | **************************************
[2026-04-13 20:47:11] 2026-04-13 18:46:40,033 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-13 20:47:11] 2026-04-13 18:46:40,053 | INFO     | sufficient remaining disk space (240383950848 B)
[2026-04-13 20:47:11] 2026-04-13 18:46:40,053 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 20:47:11] 2026-04-13 18:46:40,053 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 20:47:11] 2026-04-13 18:46:40,053 | INFO     | update_server=False
[2026-04-13 20:47:11] 2026-04-13 18:46:40,053 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 20:47:11] 2026-04-13 18:46:40,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 20:47:11] 2026-04-13 18:46:40,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 20:47:11] 2026-04-13 18:46:40,688 | INFO     | all data control threads have been joined
[2026-04-13 20:47:11] 2026-04-13 18:46:40,725 | INFO     | all payload control threads have been joined
[2026-04-13 20:47:11] 2026-04-13 18:46:40,867 | INFO     | all job control threads have been joined
[2026-04-13 20:47:11] 2026-04-13 18:46:41,059 | INFO     | [job] retrieve thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,059 | INFO     | [job] queue monitor thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,120 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,177 | INFO     | [data] copytool_in thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,503 | INFO     | [payload] validate_post thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,605 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,694 | INFO     | [data] control thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,730 | INFO     | [payload] control thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,872 | INFO     | [job] control thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:41,975 | WARNING  | process 4052562 can no longer be monitored (due to stat problems) - aborting
[2026-04-13 20:47:11] 2026-04-13 18:46:42,012 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 20:47:11] 2026-04-13 18:46:42,058 | INFO     | number of running child processes to parent process 4052562: 1
[2026-04-13 20:47:11] 2026-04-13 18:46:42,058 | INFO     | maximum number of monitored processes: 6
[2026-04-13 20:47:11] 2026-04-13 18:46:42,058 | INFO     | aborting job monitoring since job object (job id=7088553659) has expired
[2026-04-13 20:47:11] 2026-04-13 18:46:42,058 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 20:47:11] 2026-04-13 18:46:42,058 | INFO     | will abort loop
[2026-04-13 20:47:11] 2026-04-13 18:46:42,059 | INFO     | [data] copytool_out thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:42,346 | INFO     | [job] validate thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:42,456 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:42,521 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:42,544 | INFO     | [payload] failed_post thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:42,642 | INFO     | [monitor] cgroup control has ended
[2026-04-13 20:47:11] 2026-04-13 18:46:42,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 20:47:11] 2026-04-13 18:46:43,063 | INFO     | [job] job monitor thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:46,804 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 20:47:11] 2026-04-13 18:46:47,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140326669190976)>', '<ExcThread(monitor, started 140326018729728)>']
[2026-04-13 20:47:11] 2026-04-13 18:46:52,185 | INFO     | all workflow threads have been joined
[2026-04-13 20:47:11] 2026-04-13 18:46:52,186 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 20:47:11] 2026-04-13 18:46:52,186 | INFO     | traces error code: 0
[2026-04-13 20:47:11] 2026-04-13 18:46:52,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 20:47:11] 2026-04-13 18:47:10,838 | INFO     | PID=4048055 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-13 20:47:11] 2026-04-13 18:47:10,839 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 20:47:11] 2026-04-13 18:47:10,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 20:47:11] 2026-04-13 18:47:10,839 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 20:47:11] 2026-04-13 18:47:10,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 20:47:11] 2026-04-13 18:47:10,839 | INFO     | [monitor] control thread has ended
[2026-04-13 20:47:11] 2026-04-13 18:47:10,913 [wrapper] ==== pilot stdout END ====
[2026-04-13 20:47:11] 2026-04-13 18:47:10,918 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 20:47:11] 2026-04-13 18:47:10,922 [wrapper] pilotpid: 4048055
[2026-04-13 20:47:11] 2026-04-13 18:47:10,927 [wrapper] Pilot exit status: 0
[2026-04-13 20:47:11] 2026-04-13 18:47:10,939 [wrapper] pandaids: 7088553659
[2026-04-13 20:47:11] 2026-04-13 18:47:10,964 [wrapper] cleanup supervisor_pilot 4058052 4048056
[2026-04-13 20:47:11] 2026-04-13 18:47:10,968 [wrapper] Test setup, not cleaning
[2026-04-13 20:47:11] 2026-04-13 18:47:10,972 [wrapper] apfmon messages muted
[2026-04-13 20:47:11] 2026-04-13 18:47:10,976 [wrapper] ==== wrapper stdout END ====
[2026-04-13 20:47:11] 2026-04-13 18:47:10,980 [wrapper] ==== wrapper stderr END ====
[2026-04-13 20:47:11]  *** Error codes and diagnostics ***
[2026-04-13 20:47:11]     "exeErrorCode": 0,
[2026-04-13 20:47:11]     "pilotErrorCode": 0,
[2026-04-13 20:47:11]  *** Listing of results directory ***
[2026-04-13 20:47:11] total 415528
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc    644190 Apr 13 01:45 pilot3.tar.gz
[2026-04-13 20:47:11] -rwx------ 1 boinc boinc     36322 Apr 13 01:47 runpilot2-wrapper.sh
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc      5094 Apr 13 01:49 queuedata.json
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc       100 Apr 13 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 20:47:11] -rwxr-xr-x 1 boinc boinc      7986 Apr 13 19:30 run_atlas
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc       105 Apr 13 19:30 job.xml
[2026-04-13 20:47:11] -rw-r--r-- 2 boinc boinc 226786811 Apr 13 19:30 EVNT.49263198._001552.pool.root.1
[2026-04-13 20:47:11] drwxrwx--x 2 boinc boinc      4096 Apr 13 19:30 shared
[2026-04-13 20:47:11] -rw-r--r-- 2 boinc boinc    656928 Apr 13 19:30 input.tar.gz
[2026-04-13 20:47:11] -rw-r--r-- 2 boinc boinc     15665 Apr 13 19:30 start_atlas.sh
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc         0 Apr 13 19:30 boinc_setup_complete
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc      6292 Apr 13 19:30 init_data.xml
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc         0 Apr 13 19:30 boinc_lockfile
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc      2576 Apr 13 19:30 pandaJob.out
[2026-04-13 20:47:11] -rw------- 1 boinc boinc    997526 Apr 13 19:30 agis_schedconf.cvmfs.json
[2026-04-13 20:47:11] -rw------- 1 boinc boinc   1511579 Apr 13 19:30 agis_ddmendpoints.agis.ALL.json
[2026-04-13 20:47:11] -rw------- 1 boinc boinc       427 Apr 13 19:30 workernode_map.json
[2026-04-13 20:47:11] drwx------ 5 boinc boinc      4096 Apr 13 19:30 pilot3
[2026-04-13 20:47:11] -rw------- 1 boinc boinc 193271311 Apr 13 20:46 HITS.49263200._056945.pool.root.1
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc       487 Apr 13 20:46 boinc_task_state.xml
[2026-04-13 20:47:11] -rw------- 1 boinc boinc      1022 Apr 13 20:46 memory_monitor_summary.json
[2026-04-13 20:47:11] -rw------- 1 boinc boinc    251978 Apr 13 20:46 log.49263200._056945.job.log.tgz.1
[2026-04-13 20:47:11] -rw------- 1 boinc boinc      6334 Apr 13 20:46 heartbeat_new.json
[2026-04-13 20:47:11] -rw------- 1 boinc boinc      6225 Apr 13 20:46 heartbeat.json
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc      8192 Apr 13 20:46 boinc_mmap_file
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc        27 Apr 13 20:46 wrapper_checkpoint.txt
[2026-04-13 20:47:11] -rw------- 1 boinc boinc       747 Apr 13 20:47 pilotlog.txt
[2026-04-13 20:47:11] -rw------- 1 boinc boinc        95 Apr 13 20:47 pilot_heartbeat.json
[2026-04-13 20:47:11] -rw------- 1 boinc boinc    450168 Apr 13 20:47 log.49263200._056945.job.log.1
[2026-04-13 20:47:11] -rw------- 1 boinc boinc       357 Apr 13 20:47 output.list
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc       410 Apr 13 20:47 runtime_log
[2026-04-13 20:47:11] -rw------- 1 boinc boinc    716800 Apr 13 20:47 result.tar.gz
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc      8518 Apr 13 20:47 runtime_log.err
[2026-04-13 20:47:11] -rw------- 1 boinc boinc       657 Apr 13 20:47 2f011d9aed3f.diag
[2026-04-13 20:47:11] -rw-r--r-- 1 boinc boinc     11322 Apr 13 20:47 stderr.txt
[2026-04-13 20:47:11] HITS file was successfully produced:
[2026-04-13 20:47:11] -rw------- 1 boinc boinc 193271311 Apr 13 20:46 shared/HITS.pool.root.1
[2026-04-13 20:47:11]  *** Contents of shared directory: ***
[2026-04-13 20:47:11] total 411584
[2026-04-13 20:47:11] -rw-r--r-- 2 boinc boinc 226786811 Apr 13 19:30 ATLAS.root_0
[2026-04-13 20:47:11] -rw-r--r-- 2 boinc boinc    656928 Apr 13 19:30 input.tar.gz
[2026-04-13 20:47:11] -rw-r--r-- 2 boinc boinc     15665 Apr 13 19:30 start_atlas.sh
[2026-04-13 20:47:11] -rw------- 1 boinc boinc 193271311 Apr 13 20:46 HITS.pool.root.1
[2026-04-13 20:47:11] -rw------- 1 boinc boinc    716800 Apr 13 20:47 result.tar.gz
20:47:12 (4043930): run_atlas exited; CPU time 16687.753477
20:47:12 (4043930): called boinc_finish(0)

</stderr_txt>
]]>

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