Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:36:37 (29068): wrapper (7.7.26015): starting
17:36:37 (29068): wrapper: running run_atlas (--nthreads 8)
[2026-04-13 17:36:37] Arguments: --nthreads 8
[2026-04-13 17:36:37] Threads: 8
[2026-04-13 17:36:37] Checking for CVMFS
[2026-04-13 17:36:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 17:36:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 17:36:41] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 17:36:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 17:36:42] 2.11.2.0 8257 17397 83732 158421 1 93 19584371 25165824 939 130560 0 5511544 99.850 3228405 7119 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-13 17:36:42] CVMFS is ok
[2026-04-13 17:36:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 17:36:42] Checking for apptainer binary...
[2026-04-13 17:36:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 17:36:42] Running /usr/bin/apptainer --version
[2026-04-13 17:36:42] apptainer version 1.3.2-1.el7
[2026-04-13 17:36:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 17:37:07] cg-vwn409.simple-grid.lan
[2026-04-13 17:37:07] apptainer works
[2026-04-13 17:37:07] Set ATHENA_PROC_NUMBER=8
[2026-04-13 17:37:07] Set ATHENA_CORE_NUMBER=8
[2026-04-13 17:37:07] Starting ATLAS job with PandaID=7088534831
[2026-04-13 17:37:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 22:04:55]  *** The last 200 lines of the pilot log: ***
[2026-04-13 22:04:55] 2026-04-13 20:04:05,818 | INFO     | this job has now completed (state=finished)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,818 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,818 | INFO     | log transfer has been attempted: DONE
[2026-04-13 22:04:55] 2026-04-13 20:04:05,818 | INFO     | job 7088534831 has finished - writing final server update
[2026-04-13 22:04:55] 2026-04-13 20:04:05,818 | INFO     | total number of processed events: 400 (read)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,820 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7088534831/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,821 | INFO     | extracted standard info from prmon json
[2026-04-13 22:04:55] 2026-04-13 20:04:05,821 | INFO     | extracted standard memory fields from prmon json
[2026-04-13 22:04:55] 2026-04-13 20:04:05,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-13 22:04:55] 2026-04-13 20:04:05,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-13 22:04:55] 2026-04-13 20:04:05,827 | INFO     | fitting pss+swap vs Time
[2026-04-13 22:04:55] 2026-04-13 20:04:05,827 | INFO     | sum of square deviations: 4903347750.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,830 | INFO     | sum of deviations: 134695087285.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,830 | INFO     | mean x (centered): 0.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,830 | INFO     | mean y: 2408967.605577689
[2026-04-13 22:04:55] 2026-04-13 20:04:05,830 | INFO     | intersect: 2408967.605577689
[2026-04-13 22:04:55] 2026-04-13 20:04:05,831 | INFO     | chi2: 7.647914846569097
[2026-04-13 22:04:55] 2026-04-13 20:04:05,831 | INFO     | sum of square deviations: 4616114457.5
[2026-04-13 22:04:55] 2026-04-13 20:04:05,833 | INFO     | sum of deviations: 148313100910.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,833 | INFO     | mean x (centered): 0.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,834 | INFO     | mean y: 2416054.7317073173
[2026-04-13 22:04:55] 2026-04-13 20:04:05,837 | INFO     | intersect: 2416054.7317073173
[2026-04-13 22:04:55] 2026-04-13 20:04:05,837 | INFO     | chi2: 6.926696221138131
[2026-04-13 22:04:55] 2026-04-13 20:04:05,837 | INFO     | current chi2=6.926696221138131 (change=9.430264848653607 %)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,838 | INFO     | right removable region: 245
[2026-04-13 22:04:55] 2026-04-13 20:04:05,838 | INFO     | sum of square deviations: 4616114457.5
[2026-04-13 22:04:55] 2026-04-13 20:04:05,840 | INFO     | sum of deviations: 47739243580.499985
[2026-04-13 22:04:55] 2026-04-13 20:04:05,840 | INFO     | mean x (centered): 0.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,840 | INFO     | mean y: 2455108.9796747966
[2026-04-13 22:04:55] 2026-04-13 20:04:05,841 | INFO     | intersect: 2455108.9796747966
[2026-04-13 22:04:55] 2026-04-13 20:04:05,841 | INFO     | chi2: 2.703465336012853
[2026-04-13 22:04:55] 2026-04-13 20:04:05,841 | INFO     | current chi2=2.703465336012853 (change=64.65094878474432 %)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,842 | INFO     | sum of square deviations: 4340323240.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,844 | INFO     | sum of deviations: -4397827574.000002
[2026-04-13 22:04:55] 2026-04-13 20:04:05,844 | INFO     | mean x (centered): 0.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,844 | INFO     | mean y: 2483817.846473029
[2026-04-13 22:04:55] 2026-04-13 20:04:05,844 | INFO     | intersect: 2483817.846473029
[2026-04-13 22:04:55] 2026-04-13 20:04:05,844 | INFO     | chi2: 0.8433349651601272
[2026-04-13 22:04:55] 2026-04-13 20:04:05,845 | INFO     | current chi2=0.8433349651601272 (change=68.8054086018391 %)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,845 | INFO     | sum of square deviations: 4075741535.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,847 | INFO     | sum of deviations: -6869848731.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,847 | INFO     | mean x (centered): 0.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,847 | INFO     | mean y: 2485205.0084745763
[2026-04-13 22:04:55] 2026-04-13 20:04:05,847 | INFO     | intersect: 2485205.0084745763
[2026-04-13 22:04:55] 2026-04-13 20:04:05,848 | INFO     | chi2: 0.8190640047263488
[2026-04-13 22:04:55] 2026-04-13 20:04:05,848 | INFO     | current chi2=0.8190640047263488 (change=2.877973929276132 %)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,848 | INFO     | left removable region: 15
[2026-04-13 22:04:55] 2026-04-13 20:04:05,849 | INFO     | sum of square deviations: 3772712597.5
[2026-04-13 22:04:55] 2026-04-13 20:04:05,851 | INFO     | sum of deviations: 8622700323.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,851 | INFO     | mean x (centered): 0.0
[2026-04-13 22:04:55] 2026-04-13 20:04:05,851 | INFO     | mean y: 2494358.295652174
[2026-04-13 22:04:55] 2026-04-13 20:04:05,851 | INFO     | intersect: 2494358.295652174
[2026-04-13 22:04:55] 2026-04-13 20:04:05,852 | INFO     | chi2: 0.02090760597780629
[2026-04-13 22:04:55] 2026-04-13 20:04:05,852 | INFO     | current memory leak: 2.29 B/s (using 230 data points, chi2=0.02)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,852 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | ..............................
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | . Timing measurements:
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | . get job = 0 s
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | . initial setup = 122 s
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | . payload setup = 191 s
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | . stage-in = 0 s
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | . payload execution = 15432 s
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | . stage-out = 4 s
[2026-04-13 22:04:55] 2026-04-13 20:04:05,853 | INFO     | . log creation = 1 s
[2026-04-13 22:04:55] 2026-04-13 20:04:05,854 | INFO     | ..............................
[2026-04-13 22:04:55] 2026-04-13 20:04:06,003 | INFO     | 
[2026-04-13 22:04:55] 2026-04-13 20:04:06,003 | INFO     | job summary report
[2026-04-13 22:04:55] 2026-04-13 20:04:06,003 | INFO     | --------------------------------------------------
[2026-04-13 22:04:55] 2026-04-13 20:04:06,003 | INFO     | PanDA job id: 7088534831
[2026-04-13 22:04:55] 2026-04-13 20:04:06,003 | INFO     | task id: 49263200
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | errors: (none)
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | pilot state: finished 
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | transexitcode: 0
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | exeerrorcode: 0
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | exeerrordiag: 
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | exitcode: 0
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | exitmsg: OK
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | cpuconsumptiontime: 56082 s
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | nevents: 400
[2026-04-13 22:04:55] 2026-04-13 20:04:06,004 | INFO     | neventsw: 0
[2026-04-13 22:04:55] 2026-04-13 20:04:06,005 | INFO     | pid: 5187
[2026-04-13 22:04:55] 2026-04-13 20:04:06,005 | INFO     | pgrp: 5187
[2026-04-13 22:04:55] 2026-04-13 20:04:06,005 | INFO     | corecount: 8
[2026-04-13 22:04:55] 2026-04-13 20:04:06,005 | INFO     | event service: False
[2026-04-13 22:04:55] 2026-04-13 20:04:06,005 | INFO     | sizes: {0: 2279663, 1: 2271357, 2: 2281576, 12: 2281576, 15628: 2312780, 15633: 2321778, 15635: 2321962, 15637: 2322156}
[2026-04-13 22:04:55] 2026-04-13 20:04:06,005 | INFO     | --------------------------------------------------
[2026-04-13 22:04:55] 2026-04-13 20:04:06,005 | INFO     | 
[2026-04-13 22:04:55] 2026-04-13 20:04:06,005 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-04-13 22:04:55] 2026-04-13 20:04:06,689 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,689 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,689 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,689 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,689 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,689 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,690 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,690 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,690 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,690 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,690 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,690 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,690 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,690 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,691 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,691 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-13 22:04:55] 2026-04-13 20:04:06,691 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,691 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 22:04:55] 2026-04-13 20:04:06,691 | INFO     | job 7088534831 has completed (purged errors)
[2026-04-13 22:04:55] 2026-04-13 20:04:06,691 | INFO     | overall cleanup function is called
[2026-04-13 22:04:55] 2026-04-13 20:04:07,700 | INFO     | --- collectZombieJob: --- 10, [5187]
[2026-04-13 22:04:55] 2026-04-13 20:04:07,700 | INFO     | zombie collector waiting for pid 5187
[2026-04-13 22:04:55] 2026-04-13 20:04:07,700 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 22:04:55] 2026-04-13 20:04:07,700 | INFO     | collected zombie processes
[2026-04-13 22:04:55] 2026-04-13 20:04:07,700 | INFO     | will attempt to kill all subprocesses of pid=5187
[2026-04-13 22:04:55] 2026-04-13 20:04:07,788 | INFO     | process IDs to be killed: [5187] (in reverse order)
[2026-04-13 22:04:55] 2026-04-13 20:04:08,782 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 22:04:55] 2026-04-13 20:04:08,783 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 22:04:55] 2026-04-13 20:04:08,785 | INFO     | did not find any defunct processes belonging to 5187
[2026-04-13 22:04:55] 2026-04-13 20:04:08,787 | INFO     | did not find any defunct processes belonging to 5187
[2026-04-13 22:04:55] 2026-04-13 20:04:08,787 | INFO     | Ready for new job
[2026-04-13 22:04:55] 2026-04-13 20:04:08,789 | INFO     | **************************************
[2026-04-13 22:04:55] 2026-04-13 20:04:08,789 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 22:04:55] 2026-04-13 20:04:08,789 | INFO     | **************************************
[2026-04-13 22:04:55] 2026-04-13 20:04:08,789 | INFO     | 
[2026-04-13 22:04:55] 2026-04-13 20:04:08,790 | INFO     | pilot is running in a VM
[2026-04-13 22:04:55] 2026-04-13 20:04:08,790 | INFO     | architecture information:
[2026-04-13 22:04:55] 2026-04-13 20:04:08,791 | INFO     | executing command: cat /etc/os-release
[2026-04-13 22:04:55] 2026-04-13 20:04:09,042 | INFO     | cat /etc/os-release:
[2026-04-13 22:04:55] NAME="CentOS Linux"
[2026-04-13 22:04:55] VERSION="7 (Core)"
[2026-04-13 22:04:55] ID="centos"
[2026-04-13 22:04:55] ID_LIKE="rhel fedora"
[2026-04-13 22:04:55] VERSION_ID="7"
[2026-04-13 22:04:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 22:04:55] ANSI_COLOR="0;31"
[2026-04-13 22:04:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 22:04:55] HOME_URL="https://www.centos.org/"
[2026-04-13 22:04:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 22:04:55] 
[2026-04-13 22:04:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 22:04:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 22:04:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 22:04:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 22:04:55] 
[2026-04-13 22:04:55] 2026-04-13 20:04:09,043 | INFO     | **************************************
[2026-04-13 22:04:55] 2026-04-13 20:04:09,546 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-04-13 22:04:55] 2026-04-13 20:04:09,734 | INFO     | sufficient remaining disk space (496594059264 B)
[2026-04-13 22:04:55] 2026-04-13 20:04:09,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 22:04:55] 2026-04-13 20:04:09,734 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 22:04:55] 2026-04-13 20:04:09,734 | INFO     | update_server=False
[2026-04-13 22:04:55] 2026-04-13 20:04:09,734 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 22:04:55] 2026-04-13 20:04:09,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 22:04:55] 2026-04-13 20:04:09,735 | INFO     | aborting loop
[2026-04-13 22:04:55] 2026-04-13 20:04:10,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 22:04:55] 2026-04-13 20:04:10,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 22:04:55] 2026-04-13 20:04:10,246 | INFO     | all data control threads have been joined
[2026-04-13 22:04:55] 2026-04-13 20:04:10,422 | INFO     | all job control threads have been joined
[2026-04-13 22:04:55] 2026-04-13 20:04:10,491 | INFO     | all payload control threads have been joined
[2026-04-13 22:04:55] 2026-04-13 20:04:10,740 | INFO     | [job] retrieve thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:10,743 | INFO     | [job] job monitor thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:10,907 | INFO     | [payload] failed_post thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:10,941 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,018 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 22:04:55] 2026-04-13 20:04:11,022 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,252 | INFO     | [data] control thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,277 | INFO     | [data] copytool_in thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,288 | INFO     | [payload] validate_post thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,428 | INFO     | [job] control thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,497 | INFO     | [payload] control thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,693 | INFO     | [job] validate thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,801 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:11,847 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:12,024 | INFO     | [job] queue monitor thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:12,248 | INFO     | [data] copytool_out thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:14,223 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 22:04:55] 2026-04-13 20:04:39,482 | INFO     | PID=705 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-04-13 22:04:55] 2026-04-13 20:04:39,482 | INFO     | .. there are 2 such processes running
[2026-04-13 22:04:55] 2026-04-13 20:04:39,483 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 22:04:55] 2026-04-13 20:04:39,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 22:04:55] 2026-04-13 20:04:39,483 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 22:04:55] 2026-04-13 20:04:43,425 | INFO     | [monitor] cgroup control has ended
[2026-04-13 22:04:55] 2026-04-13 20:04:44,658 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140649046472512)>', '<ExcThread(monitor, started 140648720078592)>']
[2026-04-13 22:04:55] 2026-04-13 20:04:45,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 22:04:55] 2026-04-13 20:04:45,519 | INFO     | [monitor] control thread has ended
[2026-04-13 22:04:55] 2026-04-13 20:04:49,684 | INFO     | all workflow threads have been joined
[2026-04-13 22:04:55] 2026-04-13 20:04:49,684 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 22:04:55] 2026-04-13 20:04:49,684 | INFO     | traces error code: 0
[2026-04-13 22:04:55] 2026-04-13 20:04:49,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 22:04:55] 2026-04-13 20:04:50,165 [wrapper] ==== pilot stdout END ====
[2026-04-13 22:04:55] 2026-04-13 20:04:50,300 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 22:04:55] 2026-04-13 20:04:50,397 [wrapper] pilotpid: 705
[2026-04-13 22:04:55] 2026-04-13 20:04:50,457 [wrapper] Pilot exit status: 0
[2026-04-13 22:04:55] 2026-04-13 20:04:50,843 [wrapper] pandaids: 7088534831
[2026-04-13 22:04:55] 2026-04-13 20:04:51,865 [wrapper] cleanup supervisor_pilot 12287 706
[2026-04-13 22:04:55] 2026-04-13 20:04:51,927 [wrapper] Test setup, not cleaning
[2026-04-13 22:04:55] 2026-04-13 20:04:51,979 [wrapper] apfmon messages muted
[2026-04-13 22:04:55] 2026-04-13 20:04:52,109 [wrapper] ==== wrapper stdout END ====
[2026-04-13 22:04:55] 2026-04-13 20:04:52,218 [wrapper] ==== wrapper stderr END ====
[2026-04-13 22:04:55]  *** Error codes and diagnostics ***
[2026-04-13 22:04:55]     "exeErrorCode": 0,
[2026-04-13 22:04:55]     "pilotErrorCode": 0,
[2026-04-13 22:04:55]  *** Listing of results directory ***
[2026-04-13 22:04:55] total 411788
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc    644190 Apr 13 00:47 pilot3.tar.gz
[2026-04-13 22:04:55] -rwx------. 1 boinc boinc     36322 Apr 13 00:48 runpilot2-wrapper.sh
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc      5094 Apr 13 00:51 queuedata.json
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc       100 Apr 13 17:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 22:04:55] -rwxr-xr-x. 1 boinc boinc      7986 Apr 13 17:36 run_atlas
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc       105 Apr 13 17:36 job.xml
[2026-04-13 22:04:55] -rw-r--r--. 2 boinc boinc 221957273 Apr 13 17:36 EVNT.49263198._001524.pool.root.1
[2026-04-13 22:04:55] drwxrwx--x. 2 boinc boinc        68 Apr 13 17:36 shared
[2026-04-13 22:04:55] -rw-r--r--. 2 boinc boinc    656926 Apr 13 17:36 input.tar.gz
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc      6308 Apr 13 17:36 init_data.xml
[2026-04-13 22:04:55] -rw-r--r--. 2 boinc boinc     15665 Apr 13 17:36 start_atlas.sh
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc         0 Apr 13 17:36 boinc_lockfile
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc      2576 Apr 13 17:37 pandaJob.out
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc       415 Apr 13 17:43 workernode_map.json
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc    997518 Apr 13 17:43 agis_schedconf.cvmfs.json
[2026-04-13 22:04:55] drwx------. 5 boinc boinc      4096 Apr 13 17:43 pilot3
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc 191973461 Apr 13 22:02 HITS.49263200._056226.pool.root.1
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc       488 Apr 13 22:03 boinc_task_state.xml
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc      1028 Apr 13 22:03 memory_monitor_summary.json
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc   1511579 Apr 13 22:03 agis_ddmendpoints.agis.ALL.json
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc    399866 Apr 13 22:04 log.49263200._056226.job.log.tgz.1
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc      6343 Apr 13 22:04 heartbeat_new.json
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc      6234 Apr 13 22:04 heartbeat.json
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc        95 Apr 13 22:04 pilot_heartbeat.json
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc      8192 Apr 13 22:04 boinc_mmap_file
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc        28 Apr 13 22:04 wrapper_checkpoint.txt
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc      4877 Apr 13 22:04 pilotlog.txt
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc   1446576 Apr 13 22:04 log.49263200._056226.job.log.1
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc       357 Apr 13 22:04 output.list
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc       410 Apr 13 22:04 runtime_log
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc   1863680 Apr 13 22:04 result.tar.gz
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc      8438 Apr 13 22:04 runtime_log.err
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc       655 Apr 13 22:04 2150e1380d00.diag
[2026-04-13 22:04:55] -rw-r--r--. 1 boinc boinc     20609 Apr 13 22:04 stderr.txt
[2026-04-13 22:04:55] HITS file was successfully produced:
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc 191973461 Apr 13 22:02 shared/HITS.pool.root.1
[2026-04-13 22:04:55]  *** Contents of shared directory: ***
[2026-04-13 22:04:55] total 406712
[2026-04-13 22:04:55] -rw-r--r--. 2 boinc boinc 221957273 Apr 13 17:36 ATLAS.root_0
[2026-04-13 22:04:55] -rw-r--r--. 2 boinc boinc    656926 Apr 13 17:36 input.tar.gz
[2026-04-13 22:04:55] -rw-r--r--. 2 boinc boinc     15665 Apr 13 17:36 start_atlas.sh
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc 191973461 Apr 13 22:02 HITS.pool.root.1
[2026-04-13 22:04:55] -rw-------. 1 boinc boinc   1863680 Apr 13 22:04 result.tar.gz
22:04:56 (29068): run_atlas exited; CPU time 56244.382372
22:04:56 (29068): called boinc_finish(0)

</stderr_txt>
]]>

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