Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:29:59 (27940): wrapper (7.7.26015): starting
12:29:59 (27940): wrapper: running run_atlas (--nthreads 8)
[2026-04-13 12:29:59] Arguments: --nthreads 8
[2026-04-13 12:29:59] Threads: 8
[2026-04-13 12:29:59] Checking for CVMFS
[2026-04-13 12:30:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 12:30:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 12:30:03] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 12:30:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 12:30:04] 2.11.2.0 1008 17091 101468 158413 0 54 24323142 25165825 96 130560 0 6964205 99.925 2301290 2779 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-04-13 12:30:04] CVMFS is ok
[2026-04-13 12:30:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 12:30:04] Checking for apptainer binary...
[2026-04-13 12:30:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 12:30:04] Running /usr/bin/apptainer --version
[2026-04-13 12:30:04] apptainer version 1.3.2-1.el7
[2026-04-13 12:30:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 12:30:31] cg-vwn424.simple-grid.lan
[2026-04-13 12:30:31] apptainer works
[2026-04-13 12:30:31] Set ATHENA_PROC_NUMBER=8
[2026-04-13 12:30:31] Set ATHENA_CORE_NUMBER=8
[2026-04-13 12:30:31] Starting ATLAS job with PandaID=7088533888
[2026-04-13 12:30:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 16:31:28]  *** The last 200 lines of the pilot log: ***
[2026-04-13 16:31:28] 2026-04-13 14:30:11,896 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-13 16:31:28] 2026-04-13 14:30:12,810 | INFO     | monitor loop #1095: job 0:7088533888 is in state 'finished'
[2026-04-13 16:31:28] 2026-04-13 14:30:12,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,314 | INFO     | job 7088533888 has state=finished
[2026-04-13 16:31:28] 2026-04-13 14:30:14,315 | INFO     | preparing for final server update for job 7088533888 in state='finished'
[2026-04-13 16:31:28] 2026-04-13 14:30:14,315 | INFO     | reading metadata from: /var/lib/boinc/slots/9/PanDA_Pilot-7088533888/jobReport.json
[2026-04-13 16:31:28] 2026-04-13 14:30:14,318 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/9/workernode_map.json
[2026-04-13 16:31:28] 2026-04-13 14:30:14,318 | INFO     | this job has now completed (state=finished)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,318 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,319 | INFO     | log transfer has been attempted: DONE
[2026-04-13 16:31:28] 2026-04-13 14:30:14,319 | INFO     | job 7088533888 has finished - writing final server update
[2026-04-13 16:31:28] 2026-04-13 14:30:14,319 | INFO     | total number of processed events: 400 (read)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,321 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7088533888/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,322 | INFO     | extracted standard info from prmon json
[2026-04-13 16:31:28] 2026-04-13 14:30:14,322 | INFO     | extracted standard memory fields from prmon json
[2026-04-13 16:31:28] 2026-04-13 14:30:14,322 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-13 16:31:28] 2026-04-13 14:30:14,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-13 16:31:28] 2026-04-13 14:30:14,328 | INFO     | fitting pss+swap vs Time
[2026-04-13 16:31:28] 2026-04-13 14:30:14,328 | INFO     | sum of square deviations: 3485088600.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,330 | INFO     | sum of deviations: 57544979031.99997
[2026-04-13 16:31:28] 2026-04-13 14:30:14,330 | INFO     | mean x (centered): 0.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,331 | INFO     | mean y: 2446176.1071428573
[2026-04-13 16:31:28] 2026-04-13 14:30:14,331 | INFO     | intersect: 2446176.1071428573
[2026-04-13 16:31:28] 2026-04-13 14:30:14,331 | INFO     | chi2: 5.954779192046807
[2026-04-13 16:31:28] 2026-04-13 14:30:14,332 | INFO     | sum of square deviations: 3256879670.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,334 | INFO     | sum of deviations: 70881743068.00003
[2026-04-13 16:31:28] 2026-04-13 14:30:14,334 | INFO     | mean x (centered): 0.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,334 | INFO     | mean y: 2454909.904109589
[2026-04-13 16:31:28] 2026-04-13 14:30:14,334 | INFO     | intersect: 2454909.904109589
[2026-04-13 16:31:28] 2026-04-13 14:30:14,334 | INFO     | chi2: 5.239713132106713
[2026-04-13 16:31:28] 2026-04-13 14:30:14,335 | INFO     | current chi2=5.239713132106713 (change=12.008271623154977 %)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,335 | INFO     | right removable region: 218
[2026-04-13 16:31:28] 2026-04-13 14:30:14,339 | INFO     | sum of square deviations: 3256879670.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,341 | INFO     | sum of deviations: -20603563252.000004
[2026-04-13 16:31:28] 2026-04-13 14:30:14,342 | INFO     | mean x (centered): 0.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,342 | INFO     | mean y: 2498345.9315068494
[2026-04-13 16:31:28] 2026-04-13 14:30:14,342 | INFO     | intersect: 2498345.9315068494
[2026-04-13 16:31:28] 2026-04-13 14:30:14,342 | INFO     | chi2: 1.1567503917687538
[2026-04-13 16:31:28] 2026-04-13 14:30:14,342 | INFO     | current chi2=1.1567503917687538 (change=80.57442006726785 %)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,343 | INFO     | sum of square deviations: 3038856977.5
[2026-04-13 16:31:28] 2026-04-13 14:30:14,345 | INFO     | sum of deviations: -33781863257.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,345 | INFO     | mean x (centered): 0.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,345 | INFO     | mean y: 2507468.3925233646
[2026-04-13 16:31:28] 2026-04-13 14:30:14,345 | INFO     | intersect: 2507468.3925233646
[2026-04-13 16:31:28] 2026-04-13 14:30:14,346 | INFO     | chi2: 0.9168154027703965
[2026-04-13 16:31:28] 2026-04-13 14:30:14,346 | INFO     | current chi2=0.9168154027703965 (change=20.742157573984443 %)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,346 | INFO     | left removable region: 10
[2026-04-13 16:31:28] 2026-04-13 14:30:14,346 | INFO     | sum of square deviations: 2790348132.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,348 | INFO     | sum of deviations: -18938412091.999996
[2026-04-13 16:31:28] 2026-04-13 14:30:14,348 | INFO     | mean x (centered): 0.0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,348 | INFO     | mean y: 2518154.1153846155
[2026-04-13 16:31:28] 2026-04-13 14:30:14,348 | INFO     | intersect: 2518154.1153846155
[2026-04-13 16:31:28] 2026-04-13 14:30:14,349 | INFO     | chi2: 0.12897022604807112
[2026-04-13 16:31:28] 2026-04-13 14:30:14,349 | INFO     | current memory leak: -6.79 B/s (using 208 data points, chi2=0.13)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,350 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,350 | INFO     | ..............................
[2026-04-13 16:31:28] 2026-04-13 14:30:14,350 | INFO     | . Timing measurements:
[2026-04-13 16:31:28] 2026-04-13 14:30:14,350 | INFO     | . get job = 0 s
[2026-04-13 16:31:28] 2026-04-13 14:30:14,350 | INFO     | . initial setup = 126 s
[2026-04-13 16:31:28] 2026-04-13 14:30:14,350 | INFO     | . payload setup = 211 s
[2026-04-13 16:31:28] 2026-04-13 14:30:14,350 | INFO     | . stage-in = 0 s
[2026-04-13 16:31:28] 2026-04-13 14:30:14,350 | INFO     | . payload execution = 13763 s
[2026-04-13 16:31:28] 2026-04-13 14:30:14,351 | INFO     | . stage-out = 3 s
[2026-04-13 16:31:28] 2026-04-13 14:30:14,351 | INFO     | . log creation = 1 s
[2026-04-13 16:31:28] 2026-04-13 14:30:14,351 | INFO     | ..............................
[2026-04-13 16:31:28] 2026-04-13 14:30:14,566 | INFO     | 
[2026-04-13 16:31:28] 2026-04-13 14:30:14,567 | INFO     | job summary report
[2026-04-13 16:31:28] 2026-04-13 14:30:14,567 | INFO     | --------------------------------------------------
[2026-04-13 16:31:28] 2026-04-13 14:30:14,567 | INFO     | PanDA job id: 7088533888
[2026-04-13 16:31:28] 2026-04-13 14:30:14,567 | INFO     | task id: 49263200
[2026-04-13 16:31:28] 2026-04-13 14:30:14,567 | INFO     | errors: (none)
[2026-04-13 16:31:28] 2026-04-13 14:30:14,567 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-13 16:31:28] 2026-04-13 14:30:14,567 | INFO     | pilot state: finished 
[2026-04-13 16:31:28] 2026-04-13 14:30:14,567 | INFO     | transexitcode: 0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | exeerrorcode: 0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | exeerrordiag: 
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | exitcode: 0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | exitmsg: OK
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | cpuconsumptiontime: 56579 s
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | nevents: 400
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | neventsw: 0
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | pid: 4006
[2026-04-13 16:31:28] 2026-04-13 14:30:14,568 | INFO     | pgrp: 4006
[2026-04-13 16:31:28] 2026-04-13 14:30:14,569 | INFO     | corecount: 8
[2026-04-13 16:31:28] 2026-04-13 14:30:14,569 | INFO     | event service: False
[2026-04-13 16:31:28] 2026-04-13 14:30:14,569 | INFO     | sizes: {0: 2279062, 1: 2279747, 2: 2281576, 13: 2281576, 13979: 2311948, 13984: 2321130, 13986: 2321268}
[2026-04-13 16:31:28] 2026-04-13 14:30:14,569 | INFO     | --------------------------------------------------
[2026-04-13 16:31:28] 2026-04-13 14:30:14,569 | INFO     | 
[2026-04-13 16:31:28] 2026-04-13 14:30:14,569 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-04-13 16:31:28] 2026-04-13 14:30:15,057 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,057 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,057 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,057 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,057 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,058 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,058 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,059 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-13 16:31:28] 2026-04-13 14:30:15,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,059 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 16:31:28] 2026-04-13 14:30:15,060 | INFO     | job 7088533888 has completed (purged errors)
[2026-04-13 16:31:28] 2026-04-13 14:30:15,060 | INFO     | overall cleanup function is called
[2026-04-13 16:31:28] 2026-04-13 14:30:16,069 | INFO     | --- collectZombieJob: --- 10, [4006]
[2026-04-13 16:31:28] 2026-04-13 14:30:16,070 | INFO     | zombie collector waiting for pid 4006
[2026-04-13 16:31:28] 2026-04-13 14:30:16,070 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 16:31:28] 2026-04-13 14:30:16,070 | INFO     | collected zombie processes
[2026-04-13 16:31:28] 2026-04-13 14:30:16,070 | INFO     | will attempt to kill all subprocesses of pid=4006
[2026-04-13 16:31:28] 2026-04-13 14:30:16,170 | INFO     | process IDs to be killed: [4006] (in reverse order)
[2026-04-13 16:31:28] 2026-04-13 14:30:17,262 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 16:31:28] 2026-04-13 14:30:17,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 16:31:28] 2026-04-13 14:30:17,265 | INFO     | did not find any defunct processes belonging to 4006
[2026-04-13 16:31:28] 2026-04-13 14:30:17,267 | INFO     | did not find any defunct processes belonging to 4006
[2026-04-13 16:31:28] 2026-04-13 14:30:17,267 | INFO     | Ready for new job
[2026-04-13 16:31:28] 2026-04-13 14:30:17,269 | INFO     | **************************************
[2026-04-13 16:31:28] 2026-04-13 14:30:17,269 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 16:31:28] 2026-04-13 14:30:17,269 | INFO     | **************************************
[2026-04-13 16:31:28] 2026-04-13 14:30:17,269 | INFO     | 
[2026-04-13 16:31:28] 2026-04-13 14:30:17,270 | INFO     | pilot is running in a VM
[2026-04-13 16:31:28] 2026-04-13 14:30:17,270 | INFO     | architecture information:
[2026-04-13 16:31:28] 2026-04-13 14:30:17,282 | INFO     | executing command: cat /etc/os-release
[2026-04-13 16:31:28] 2026-04-13 14:30:17,705 | INFO     | cat /etc/os-release:
[2026-04-13 16:31:28] NAME="CentOS Linux"
[2026-04-13 16:31:28] VERSION="7 (Core)"
[2026-04-13 16:31:28] ID="centos"
[2026-04-13 16:31:28] ID_LIKE="rhel fedora"
[2026-04-13 16:31:28] VERSION_ID="7"
[2026-04-13 16:31:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 16:31:28] ANSI_COLOR="0;31"
[2026-04-13 16:31:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 16:31:28] HOME_URL="https://www.centos.org/"
[2026-04-13 16:31:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 16:31:28] 
[2026-04-13 16:31:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 16:31:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 16:31:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 16:31:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 16:31:28] 
[2026-04-13 16:31:28] 2026-04-13 14:30:17,705 | INFO     | **************************************
[2026-04-13 16:31:28] 2026-04-13 14:30:18,208 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-04-13 16:31:28] 2026-04-13 14:30:18,438 | INFO     | sufficient remaining disk space (496633905152 B)
[2026-04-13 16:31:28] 2026-04-13 14:30:18,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 16:31:28] 2026-04-13 14:30:18,438 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 16:31:28] 2026-04-13 14:30:18,439 | INFO     | update_server=False
[2026-04-13 16:31:28] 2026-04-13 14:30:18,439 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 16:31:28] 2026-04-13 14:30:18,441 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 16:31:28] 2026-04-13 14:30:18,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 16:31:28] 2026-04-13 14:30:18,833 | INFO     | aborting loop
[2026-04-13 16:31:28] 2026-04-13 14:30:18,934 | INFO     | all data control threads have been joined
[2026-04-13 16:31:28] 2026-04-13 14:30:18,994 | INFO     | all payload control threads have been joined
[2026-04-13 16:31:28] 2026-04-13 14:30:19,379 | INFO     | all job control threads have been joined
[2026-04-13 16:31:28] 2026-04-13 14:30:19,444 | INFO     | [job] retrieve thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:19,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 16:31:28] 2026-04-13 14:30:19,748 | INFO     | [payload] failed_post thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:19,838 | INFO     | [job] job monitor thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:19,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 16:31:28] 2026-04-13 14:30:19,940 | INFO     | [data] control thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:19,992 | INFO     | [job] validate thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,000 | INFO     | [payload] control thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,010 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,039 | INFO     | [data] copytool_in thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,064 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,365 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,385 | INFO     | [job] control thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,567 | INFO     | [job] queue monitor thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,880 | INFO     | [payload] validate_post thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:20,886 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:21,941 | INFO     | [data] copytool_out thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:22,450 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 16:31:28] 2026-04-13 14:30:46,544 | INFO     | PID=31927 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-13 16:31:28] 2026-04-13 14:30:46,544 | INFO     | .. there are 2 such processes running
[2026-04-13 16:31:28] 2026-04-13 14:30:46,546 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 16:31:28] 2026-04-13 14:30:46,546 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 16:31:28] 2026-04-13 14:30:46,546 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 16:31:28] 2026-04-13 14:31:18,008 | INFO     | [monitor] cgroup control has ended
[2026-04-13 16:31:28] 2026-04-13 14:31:18,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139910459193152)>', '<ExcThread(monitor, started 139909985703680)>']
[2026-04-13 16:31:28] 2026-04-13 14:31:18,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 16:31:28] 2026-04-13 14:31:18,738 | INFO     | [monitor] control thread has ended
[2026-04-13 16:31:28] 2026-04-13 14:31:23,266 | INFO     | all workflow threads have been joined
[2026-04-13 16:31:28] 2026-04-13 14:31:23,267 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 16:31:28] 2026-04-13 14:31:23,267 | INFO     | traces error code: 0
[2026-04-13 16:31:28] 2026-04-13 14:31:23,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 16:31:28] 2026-04-13 14:31:23,674 [wrapper] ==== pilot stdout END ====
[2026-04-13 16:31:28] 2026-04-13 14:31:23,783 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 16:31:28] 2026-04-13 14:31:23,890 [wrapper] pilotpid: 31927
[2026-04-13 16:31:28] 2026-04-13 14:31:23,962 [wrapper] Pilot exit status: 0
[2026-04-13 16:31:28] 2026-04-13 14:31:24,458 [wrapper] pandaids: 7088533888
[2026-04-13 16:31:28] 2026-04-13 14:31:24,943 [wrapper] cleanup supervisor_pilot 21517 31928
[2026-04-13 16:31:28] 2026-04-13 14:31:24,959 [wrapper] Test setup, not cleaning
[2026-04-13 16:31:28] 2026-04-13 14:31:24,972 [wrapper] apfmon messages muted
[2026-04-13 16:31:28] 2026-04-13 14:31:24,990 [wrapper] ==== wrapper stdout END ====
[2026-04-13 16:31:28] 2026-04-13 14:31:25,049 [wrapper] ==== wrapper stderr END ====
[2026-04-13 16:31:28]  *** Error codes and diagnostics ***
[2026-04-13 16:31:28]     "exeErrorCode": 0,
[2026-04-13 16:31:28]     "pilotErrorCode": 0,
[2026-04-13 16:31:28]  *** Listing of results directory ***
[2026-04-13 16:31:28] total 417404
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc    644190 Apr 13 00:47 pilot3.tar.gz
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc      5094 Apr 13 00:47 queuedata.json
[2026-04-13 16:31:28] -rwx------. 1 boinc boinc     36322 Apr 13 00:48 runpilot2-wrapper.sh
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc       100 Apr 13 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 16:31:28] -rwxr-xr-x. 1 boinc boinc      7986 Apr 13 12:29 run_atlas
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc       105 Apr 13 12:29 job.xml
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc      6306 Apr 13 12:29 init_data.xml
[2026-04-13 16:31:28] -rw-r--r--. 2 boinc boinc 224371108 Apr 13 12:29 EVNT.49263198._001508.pool.root.1
[2026-04-13 16:31:28] -rw-r--r--. 2 boinc boinc     15665 Apr 13 12:29 start_atlas.sh
[2026-04-13 16:31:28] drwxrwx--x. 2 boinc boinc        68 Apr 13 12:29 shared
[2026-04-13 16:31:28] -rw-r--r--. 2 boinc boinc    656925 Apr 13 12:29 input.tar.gz
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc         0 Apr 13 12:29 boinc_lockfile
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc      2576 Apr 13 12:30 pandaJob.out
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc       415 Apr 13 12:36 workernode_map.json
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc    997783 Apr 13 12:36 agis_schedconf.cvmfs.json
[2026-04-13 16:31:28] drwx------. 5 boinc boinc      4096 Apr 13 12:36 pilot3
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc 195647039 Apr 13 16:28 HITS.49263200._055830.pool.root.1
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc       489 Apr 13 16:28 boinc_task_state.xml
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc      1021 Apr 13 16:30 memory_monitor_summary.json
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc   1511579 Apr 13 16:30 agis_ddmendpoints.agis.ALL.json
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc    387667 Apr 13 16:30 log.49263200._055830.job.log.tgz.1
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc      6343 Apr 13 16:30 heartbeat_new.json
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc      6234 Apr 13 16:30 heartbeat.json
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc        95 Apr 13 16:30 pilot_heartbeat.json
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc      8192 Apr 13 16:30 boinc_mmap_file
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc        28 Apr 13 16:30 wrapper_checkpoint.txt
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc      4879 Apr 13 16:31 pilotlog.txt
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc   1289358 Apr 13 16:31 log.49263200._055830.job.log.1
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc       357 Apr 13 16:31 output.list
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc       410 Apr 13 16:31 runtime_log
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc   1699840 Apr 13 16:31 result.tar.gz
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc      8438 Apr 13 16:31 runtime_log.err
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc       655 Apr 13 16:31 213304e66a9f.diag
[2026-04-13 16:31:28] -rw-r--r--. 1 boinc boinc     20863 Apr 13 16:31 stderr.txt
[2026-04-13 16:31:28] HITS file was successfully produced:
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc 195647039 Apr 13 16:28 shared/HITS.pool.root.1
[2026-04-13 16:31:28]  *** Contents of shared directory: ***
[2026-04-13 16:31:28] total 412500
[2026-04-13 16:31:28] -rw-r--r--. 2 boinc boinc 224371108 Apr 13 12:29 ATLAS.root_0
[2026-04-13 16:31:28] -rw-r--r--. 2 boinc boinc     15665 Apr 13 12:29 start_atlas.sh
[2026-04-13 16:31:28] -rw-r--r--. 2 boinc boinc    656925 Apr 13 12:29 input.tar.gz
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc 195647039 Apr 13 16:28 HITS.pool.root.1
[2026-04-13 16:31:28] -rw-------. 1 boinc boinc   1699840 Apr 13 16:31 result.tar.gz
16:31:29 (27940): run_atlas exited; CPU time 56712.680428
16:31:29 (27940): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN