Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:51 (2193982): wrapper (7.7.26015): starting
00:04:51 (2193982): wrapper: running run_atlas (--nthreads 8)
[2026-04-13 00:04:51] Arguments: --nthreads 8
[2026-04-13 00:04:51] Threads: 8
[2026-04-13 00:04:51] Checking for CVMFS
[2026-04-13 00:04:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 00:04:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 00:04:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 00:04:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 00:04:55] 2.13.3.0 12442 17996 362396 158401 0 329 16598552 32935936 28802 16776704 0 29043695 99.407 48577894 14915 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-13 00:04:55] CVMFS is ok
[2026-04-13 00:04:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-13 00:04:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-13 00:04:55] Further information can be found at the LHC@home message board.
[2026-04-13 00:04:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 00:04:55] Checking for apptainer binary...
[2026-04-13 00:04:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 00:04:55] Running /usr/bin/apptainer --version
[2026-04-13 00:04:55] apptainer version 1.4.5-3.el9
[2026-04-13 00:04:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 00:04:57] c6-12-25-4.aglt2.org
[2026-04-13 00:04:57] apptainer works
[2026-04-13 00:04:57] Set ATHENA_PROC_NUMBER=8
[2026-04-13 00:04:57] Set ATHENA_CORE_NUMBER=8
[2026-04-13 00:04:57] Starting ATLAS job with PandaID=7088495509
[2026-04-13 00:04:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 18:22:57]  *** The last 200 lines of the pilot log: ***
[2026-04-13 18:22:57] 2026-04-13 22:21:46,799 | INFO     | sum of deviations: 837535909838.5503
[2026-04-13 18:22:57] 2026-04-13 22:21:46,799 | INFO     | mean x (centered): 0.0
[2026-04-13 18:22:57] 2026-04-13 22:21:46,800 | INFO     | mean y: 2479557.7138863
[2026-04-13 18:22:57] 2026-04-13 22:21:46,816 | INFO     | intersect: 2479557.7138863
[2026-04-13 18:22:57] 2026-04-13 22:21:46,842 | INFO     | chi2: 8.84937364686534
[2026-04-13 18:22:57] 2026-04-13 22:21:46,866 | INFO     | sum of square deviations: 377739078545.5981
[2026-04-13 18:22:57] 2026-04-13 22:21:47,223 | INFO     | sum of deviations: 1101103939315.691
[2026-04-13 18:22:57] 2026-04-13 22:21:47,243 | INFO     | mean x (centered): 0.0
[2026-04-13 18:22:57] 2026-04-13 22:21:47,243 | INFO     | mean y: 2487091.043071161
[2026-04-13 18:22:57] 2026-04-13 22:21:47,244 | INFO     | intersect: 2487091.043071161
[2026-04-13 18:22:57] 2026-04-13 22:21:47,266 | INFO     | chi2: 6.089485445462866
[2026-04-13 18:22:57] 2026-04-13 22:21:47,267 | INFO     | current chi2=6.089485445462866 (change=31.187384684339687 %)
[2026-04-13 18:22:57] 2026-04-13 22:21:47,291 | INFO     | sum of square deviations: 372458580598.758
[2026-04-13 18:22:57] 2026-04-13 22:21:47,679 | INFO     | sum of deviations: 1095466408161.723
[2026-04-13 18:22:57] 2026-04-13 22:21:47,680 | INFO     | mean x (centered): 0.0
[2026-04-13 18:22:57] 2026-04-13 22:21:47,680 | INFO     | mean y: 2486928.231420508
[2026-04-13 18:22:57] 2026-04-13 22:21:47,698 | INFO     | intersect: 2486928.231420508
[2026-04-13 18:22:57] 2026-04-13 22:21:47,706 | INFO     | chi2: 6.089055446489921
[2026-04-13 18:22:57] 2026-04-13 22:21:47,727 | INFO     | current chi2=6.089055446489921 (change=0.007061335096319069 %)
[2026-04-13 18:22:57] 2026-04-13 22:21:47,728 | INFO     | right removable region: 1062
[2026-04-13 18:22:57] 2026-04-13 22:21:47,751 | INFO     | sum of square deviations: 377738368258.4371
[2026-04-13 18:22:57] 2026-04-13 22:21:48,441 | INFO     | sum of deviations: 497283860472.53815
[2026-04-13 18:22:57] 2026-04-13 22:21:48,511 | INFO     | mean x (centered): 0.0
[2026-04-13 18:22:57] 2026-04-13 22:21:48,511 | INFO     | mean y: 2489287.993445693
[2026-04-13 18:22:57] 2026-04-13 22:21:48,512 | INFO     | intersect: 2489287.993445693
[2026-04-13 18:22:57] 2026-04-13 22:21:48,611 | INFO     | chi2: 5.182933134114816
[2026-04-13 18:22:57] 2026-04-13 22:21:48,612 | INFO     | current chi2=5.182933134114816 (change=41.43163865670046 %)
[2026-04-13 18:22:57] 2026-04-13 22:21:48,707 | INFO     | monitor loop #2352: job 0:7088495509 is in state 'finished'
[2026-04-13 18:22:57] 2026-04-13 22:21:48,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-13 18:22:57] 2026-04-13 22:21:48,724 | INFO     | sum of square deviations: 372457485889.6555
[2026-04-13 18:22:57] 2026-04-13 22:21:50,146 | INFO     | sum of deviations: 278307800032.07324
[2026-04-13 18:22:57] 2026-04-13 22:21:50,147 | INFO     | mean x (centered): 0.0
[2026-04-13 18:22:57] 2026-04-13 22:21:50,147 | INFO     | mean y: 2495611.0188146755
[2026-04-13 18:22:57] 2026-04-13 22:21:50,147 | INFO     | intersect: 2495611.0188146755
[2026-04-13 18:22:57] 2026-04-13 22:21:50,219 | INFO     | chi2: 3.742199694551388
[2026-04-13 18:22:57] 2026-04-13 22:21:50,220 | INFO     | current chi2=3.742199694551388 (change=27.797646666137993 %)
[2026-04-13 18:22:57] 2026-04-13 22:21:50,340 | INFO     | sum of square deviations: 367226369793.30835
[2026-04-13 18:22:57] 2026-04-13 22:21:51,411 | INFO     | monitor loop #2353: job 0:7088495509 is in state 'finished'
[2026-04-13 18:22:57] 2026-04-13 22:21:51,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-13 18:22:57] 2026-04-13 22:21:51,659 | INFO     | sum of deviations: 159850459329.06607
[2026-04-13 18:22:57] 2026-04-13 22:21:51,660 | INFO     | mean x (centered): 0.0
[2026-04-13 18:22:57] 2026-04-13 22:21:51,660 | INFO     | mean y: 2499063.372400756
[2026-04-13 18:22:57] 2026-04-13 22:21:51,660 | INFO     | intersect: 2499063.372400756
[2026-04-13 18:22:57] 2026-04-13 22:21:51,746 | INFO     | chi2: 3.325995712156141
[2026-04-13 18:22:57] 2026-04-13 22:21:51,856 | INFO     | current chi2=3.325995712156141 (change=11.121907337046615 %)
[2026-04-13 18:22:57] 2026-04-13 22:21:51,856 | INFO     | left removable region: 15
[2026-04-13 18:22:57] 2026-04-13 22:21:51,928 | INFO     | sum of square deviations: 355891282161.02167
[2026-04-13 18:22:57] 2026-04-13 22:21:53,246 | INFO     | sum of deviations: 420025399095.0439
[2026-04-13 18:22:57] 2026-04-13 22:21:53,265 | INFO     | mean x (centered): 0.0
[2026-04-13 18:22:57] 2026-04-13 22:21:53,265 | INFO     | mean y: 2506711.605539637
[2026-04-13 18:22:57] 2026-04-13 22:21:53,266 | INFO     | intersect: 2506711.605539637
[2026-04-13 18:22:57] 2026-04-13 22:21:53,270 | INFO     | chi2: 0.5209912500500736
[2026-04-13 18:22:57] 2026-04-13 22:21:53,271 | INFO     | current memory leak: 1.18 B/s (using 1047 data points, chi2=0.52)
[2026-04-13 18:22:57] 2026-04-13 22:21:53,274 | INFO     | could have reported an average CPU frequency of 1000 MHz (40 samples)
[2026-04-13 18:22:57] 2026-04-13 22:21:53,274 | INFO     | ..............................
[2026-04-13 18:22:57] 2026-04-13 22:21:53,275 | INFO     | . Timing measurements:
[2026-04-13 18:22:57] 2026-04-13 22:21:53,275 | INFO     | . get job = 0 s
[2026-04-13 18:22:57] 2026-04-13 22:21:53,275 | INFO     | . initial setup = 57 s
[2026-04-13 18:22:57] 2026-04-13 22:21:53,275 | INFO     | . payload setup = 121 s
[2026-04-13 18:22:57] 2026-04-13 22:21:53,275 | INFO     | . stage-in = 1 s
[2026-04-13 18:22:57] 2026-04-13 22:21:53,276 | INFO     | . payload execution = 65476 s
[2026-04-13 18:22:57] 2026-04-13 22:21:53,276 | INFO     | . stage-out = 11 s
[2026-04-13 18:22:57] 2026-04-13 22:21:53,276 | INFO     | . log creation = 1 s
[2026-04-13 18:22:57] 2026-04-13 22:21:53,276 | INFO     | ..............................
[2026-04-13 18:22:57] 2026-04-13 22:21:56,351 | INFO     | 
[2026-04-13 18:22:57] 2026-04-13 22:21:56,351 | INFO     | job summary report
[2026-04-13 18:22:57] 2026-04-13 22:21:56,352 | INFO     | --------------------------------------------------
[2026-04-13 18:22:57] 2026-04-13 22:21:56,352 | INFO     | PanDA job id: 7088495509
[2026-04-13 18:22:57] 2026-04-13 22:21:56,352 | INFO     | task id: 49645815
[2026-04-13 18:22:57] 2026-04-13 22:21:56,352 | INFO     | errors: (none)
[2026-04-13 18:22:57] 2026-04-13 22:21:56,352 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-13 18:22:57] 2026-04-13 22:21:56,353 | INFO     | pilot state: finished 
[2026-04-13 18:22:57] 2026-04-13 22:21:56,353 | INFO     | transexitcode: 0
[2026-04-13 18:22:57] 2026-04-13 22:21:56,353 | INFO     | exeerrorcode: 0
[2026-04-13 18:22:57] 2026-04-13 22:21:56,353 | INFO     | exeerrordiag: 
[2026-04-13 18:22:57] 2026-04-13 22:21:56,353 | INFO     | exitcode: 0
[2026-04-13 18:22:57] 2026-04-13 22:21:56,353 | INFO     | exitmsg: OK
[2026-04-13 18:22:57] 2026-04-13 22:21:56,354 | INFO     | cpuconsumptiontime: 147641 s
[2026-04-13 18:22:57] 2026-04-13 22:21:56,354 | INFO     | nevents: 400
[2026-04-13 18:22:57] 2026-04-13 22:21:56,354 | INFO     | neventsw: 0
[2026-04-13 18:22:57] 2026-04-13 22:21:56,354 | INFO     | pid: 2208952
[2026-04-13 18:22:57] 2026-04-13 22:21:56,354 | INFO     | pgrp: 2208952
[2026-04-13 18:22:57] 2026-04-13 22:21:56,378 | INFO     | corecount: 8
[2026-04-13 18:22:57] 2026-04-13 22:21:56,378 | INFO     | event service: False
[2026-04-13 18:22:57] 2026-04-13 22:21:56,379 | INFO     | sizes: {0: 2279707, 1: 2279763, 2: 2279819, 4: 2279819, 5: 2281648, 6: 2281676, 17: 2281832, 65611: 2332487, 65614: 2332486, 65626: 2341540, 65629: 2341596, 65642:
[2026-04-13 18:22:57] 2026-04-13 22:21:56,379 | INFO     | --------------------------------------------------
[2026-04-13 18:22:57] 2026-04-13 22:21:56,379 | INFO     | 
[2026-04-13 18:22:57] 2026-04-13 22:21:56,379 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-04-13 18:22:57] 2026-04-13 22:21:56,736 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,736 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,737 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,737 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,737 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,737 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,738 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,738 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,738 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,760 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,762 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,762 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,762 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,762 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-13 18:22:57] 2026-04-13 22:21:56,763 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,763 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 18:22:57] 2026-04-13 22:21:56,763 | INFO     | job 7088495509 has completed (purged errors)
[2026-04-13 18:22:57] 2026-04-13 22:21:56,764 | INFO     | overall cleanup function is called
[2026-04-13 18:22:57] 2026-04-13 22:21:57,874 | INFO     | --- collectZombieJob: --- 10, [2208952]
[2026-04-13 18:22:57] 2026-04-13 22:21:57,874 | INFO     | zombie collector waiting for pid 2208952
[2026-04-13 18:22:57] 2026-04-13 22:21:57,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 18:22:57] 2026-04-13 22:21:57,875 | INFO     | collected zombie processes
[2026-04-13 18:22:57] 2026-04-13 22:21:57,875 | INFO     | will attempt to kill all subprocesses of pid=2208952
[2026-04-13 18:22:57] 2026-04-13 22:22:09,396 | INFO     | PID=2199176 has CPU usage=17.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-13 18:22:57] 2026-04-13 22:22:09,420 | INFO     | .. there are 32 such processes running
[2026-04-13 18:22:57] 2026-04-13 22:22:09,462 | INFO     | process IDs to be killed: [2208952] (in reverse order)
[2026-04-13 18:22:57] 2026-04-13 22:22:10,471 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 18:22:57] 2026-04-13 22:22:10,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 18:22:57] 2026-04-13 22:22:10,537 | INFO     | did not find any defunct processes belonging to 2208952
[2026-04-13 18:22:57] 2026-04-13 22:22:10,627 | INFO     | did not find any defunct processes belonging to 2208952
[2026-04-13 18:22:57] 2026-04-13 22:22:10,628 | INFO     | Ready for new job
[2026-04-13 18:22:57] 2026-04-13 22:22:10,642 | INFO     | **************************************
[2026-04-13 18:22:57] 2026-04-13 22:22:10,643 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 18:22:57] 2026-04-13 22:22:10,643 | INFO     | **************************************
[2026-04-13 18:22:57] 2026-04-13 22:22:10,643 | INFO     | 
[2026-04-13 18:22:57] 2026-04-13 22:22:10,674 | INFO     | architecture information:
[2026-04-13 18:22:57] 2026-04-13 22:22:10,686 | INFO     | executing command: cat /etc/os-release
[2026-04-13 18:22:57] 2026-04-13 22:22:10,810 | INFO     | cat /etc/os-release:
[2026-04-13 18:22:57] NAME="CentOS Linux"
[2026-04-13 18:22:57] VERSION="7 (Core)"
[2026-04-13 18:22:57] ID="centos"
[2026-04-13 18:22:57] ID_LIKE="rhel fedora"
[2026-04-13 18:22:57] VERSION_ID="7"
[2026-04-13 18:22:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 18:22:57] ANSI_COLOR="0;31"
[2026-04-13 18:22:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 18:22:57] HOME_URL="https://www.centos.org/"
[2026-04-13 18:22:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 18:22:57] 
[2026-04-13 18:22:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 18:22:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 18:22:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 18:22:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 18:22:57] 
[2026-04-13 18:22:57] 2026-04-13 22:22:10,811 | INFO     | **************************************
[2026-04-13 18:22:57] 2026-04-13 22:22:11,315 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-13 18:22:57] 2026-04-13 22:22:11,450 | INFO     | sufficient remaining disk space (93506764800 B)
[2026-04-13 18:22:57] 2026-04-13 22:22:11,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 18:22:57] 2026-04-13 22:22:11,452 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 18:22:57] 2026-04-13 22:22:11,452 | INFO     | update_server=False
[2026-04-13 18:22:57] 2026-04-13 22:22:11,452 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 18:22:57] 2026-04-13 22:22:11,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 18:22:57] 2026-04-13 22:22:11,457 | INFO     | aborting loop
[2026-04-13 18:22:57] 2026-04-13 22:22:12,285 | INFO     | all payload control threads have been joined
[2026-04-13 18:22:57] 2026-04-13 22:22:12,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 18:22:57] 2026-04-13 22:22:12,347 | INFO     | all data control threads have been joined
[2026-04-13 18:22:57] 2026-04-13 22:22:12,463 | INFO     | [job] retrieve thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:12,464 | INFO     | [job] job monitor thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:12,508 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:12,641 | INFO     | all job control threads have been joined
[2026-04-13 18:22:57] 2026-04-13 22:22:12,720 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:12,813 | INFO     | [payload] failed_post thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:12,814 | INFO     | [payload] validate_post thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:13,291 | INFO     | [payload] control thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:13,353 | INFO     | [data] control thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:13,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 18:22:57] 2026-04-13 22:22:13,524 | INFO     | [job] validate thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:13,647 | INFO     | [job] control thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:13,716 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:13,717 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 18:22:57] 2026-04-13 22:22:13,880 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:13,920 | INFO     | [data] copytool_in thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:14,334 | INFO     | [data] copytool_out thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:14,723 | INFO     | [job] queue monitor thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:17,392 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 18:22:57] 2026-04-13 22:22:41,686 | INFO     | [monitor] cgroup control has ended
[2026-04-13 18:22:57] 2026-04-13 22:22:42,079 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038754834240)>', '<ExcThread(monitor, started 140038390138624)>']
[2026-04-13 18:22:57] 2026-04-13 22:22:47,122 | INFO     | all workflow threads have been joined
[2026-04-13 18:22:57] 2026-04-13 22:22:47,216 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 18:22:57] 2026-04-13 22:22:47,217 | INFO     | traces error code: 0
[2026-04-13 18:22:57] 2026-04-13 22:22:47,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 18:22:57] 2026-04-13 22:22:51,527 | INFO     | PID=2199176 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-13 18:22:57] 2026-04-13 22:22:51,528 | INFO     | .. there are 32 such processes running
[2026-04-13 18:22:57] 2026-04-13 22:22:51,528 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 18:22:57] 2026-04-13 22:22:51,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 18:22:57] 2026-04-13 22:22:51,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 18:22:57] 2026-04-13 22:22:51,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 18:22:57] 2026-04-13 22:22:51,529 | INFO     | [monitor] control thread has ended
[2026-04-13 18:22:57] 2026-04-13 22:22:55,931 [wrapper] ==== pilot stdout END ====
[2026-04-13 18:22:57] 2026-04-13 22:22:55,946 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 18:22:57] 2026-04-13 22:22:55,977 [wrapper] pilotpid: 2199176
[2026-04-13 18:22:57] 2026-04-13 22:22:56,011 [wrapper] Pilot exit status: 0
[2026-04-13 18:22:57] 2026-04-13 22:22:56,128 [wrapper] pandaids: 7088495509
[2026-04-13 18:22:57] 2026-04-13 22:22:56,855 [wrapper] cleanup supervisor_pilot  537312 2199177
[2026-04-13 18:22:57] 2026-04-13 22:22:56,862 [wrapper] Test setup, not cleaning
[2026-04-13 18:22:57] 2026-04-13 22:22:56,871 [wrapper] apfmon messages muted
[2026-04-13 18:22:57] 2026-04-13 22:22:56,881 [wrapper] ==== wrapper stdout END ====
[2026-04-13 18:22:57] 2026-04-13 22:22:56,890 [wrapper] ==== wrapper stderr END ====
[2026-04-13 18:22:57]  *** Error codes and diagnostics ***
[2026-04-13 18:22:57]     "exeErrorCode": 0,
[2026-04-13 18:22:57]     "pilotErrorCode": 0,
[2026-04-13 18:22:57]  *** Listing of results directory ***
[2026-04-13 18:22:57] total 424712
[2026-04-13 18:22:57] -rwx------. 1 boincer umatlas     36322 Apr 12 16:09 runpilot2-wrapper.sh
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas      5094 Apr 12 16:09 queuedata.json
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas    644190 Apr 12 16:10 pilot3.tar.gz
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas       100 Apr 13 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 18:22:57] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 13 00:04 run_atlas
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas       105 Apr 13 00:04 job.xml
[2026-04-13 18:22:57] -rw-r--r--. 2 boincer umatlas 226269158 Apr 13 00:04 EVNT.48629115._000377.pool.root.1
[2026-04-13 18:22:57] -rw-r--r--. 2 boincer umatlas    656942 Apr 13 00:04 input.tar.gz
[2026-04-13 18:22:57] drwxrwx--x. 2 boincer umatlas      4096 Apr 13 00:04 shared
[2026-04-13 18:22:57] -rw-r--r--. 2 boincer umatlas     15665 Apr 13 00:04 start_atlas.sh
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas         0 Apr 13 00:04 boinc_lockfile
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas      2627 Apr 13 00:04 pandaJob.out
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas        57 Apr 13 00:04 setup.sh.local
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas    997767 Apr 13 00:06 agis_schedconf.cvmfs.json
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas       444 Apr 13 00:07 workernode_map.json
[2026-04-13 18:22:57] drwx------. 5 boincer umatlas      4096 Apr 13 00:07 pilot3
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas 195710642 Apr 13 18:16 HITS.49645815._009417.pool.root.1
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas       490 Apr 13 18:16 boinc_task_state.xml
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas      6776 Apr 13 18:20 init_data.xml
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas      1043 Apr 13 18:21 memory_monitor_summary.json
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas   1511579 Apr 13 18:21 agis_ddmendpoints.agis.ALL.json
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas    728001 Apr 13 18:21 log.49645815._009417.job.log.tgz.1
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas      6427 Apr 13 18:21 heartbeat_new.json
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas      6318 Apr 13 18:21 heartbeat.json
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas        96 Apr 13 18:22 pilot_heartbeat.json
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas        29 Apr 13 18:22 wrapper_checkpoint.txt
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas      8192 Apr 13 18:22 boinc_mmap_file
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas       823 Apr 13 18:22 pilotlog.txt
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas   3706997 Apr 13 18:22 log.49645815._009417.job.log.1
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas       357 Apr 13 18:22 output.list
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas       410 Apr 13 18:22 runtime_log
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas   4454400 Apr 13 18:22 result.tar.gz
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas      8974 Apr 13 18:22 runtime_log.err
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas       661 Apr 13 18:22 fc079f083cec.diag
[2026-04-13 18:22:57] -rw-r--r--. 1 boincer umatlas     12343 Apr 13 18:22 stderr.txt
[2026-04-13 18:22:57] HITS file was successfully produced:
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas 195710642 Apr 13 18:16 shared/HITS.pool.root.1
[2026-04-13 18:22:57]  *** Contents of shared directory: ***
[2026-04-13 18:22:57] total 417112
[2026-04-13 18:22:57] -rw-r--r--. 2 boincer umatlas 226269158 Apr 13 00:04 ATLAS.root_0
[2026-04-13 18:22:57] -rw-r--r--. 2 boincer umatlas    656942 Apr 13 00:04 input.tar.gz
[2026-04-13 18:22:57] -rw-r--r--. 2 boincer umatlas     15665 Apr 13 00:04 start_atlas.sh
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas 195710642 Apr 13 18:16 HITS.pool.root.1
[2026-04-13 18:22:57] -rw-------. 1 boincer umatlas   4454400 Apr 13 18:22 result.tar.gz
18:22:59 (2193982): run_atlas exited; CPU time 154570.366168
18:22:59 (2193982): called boinc_finish(0)

</stderr_txt>
]]>

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