Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
2026-04-13 12:50:33 (107594): vboxwrapper version 26210
2026-04-13 12:50:33 (107594): BOINC client version: 8.2.9
2026-04-13 12:50:33 (107594): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2026-04-13 12:50:33 (107594): Successfully copied 'init_data.xml' to the shared directory.
2026-04-13 12:50:33 (107594): Create VM. (boinc_c1b7ca4cbd39e68f, slot#2)
2026-04-13 12:50:33 (107594): Setting Memory Size for VM. (4500MB)
2026-04-13 12:50:33 (107594): Setting CPU Count for VM. (5)
2026-04-13 12:50:33 (107594): Setting Chipset Options for VM.
2026-04-13 12:50:33 (107594): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-04-13 12:50:33 (107594): Setting Boot Options for VM.
2026-04-13 12:50:33 (107594): Setting Network Configuration for NAT. (Driver: virtio)
2026-04-13 12:50:34 (107594): Enabling VM Network Access.
2026-04-13 12:50:34 (107594): Disabling USB Support for VM.
2026-04-13 12:50:34 (107594): Disabling COM Port Support for VM.
2026-04-13 12:50:34 (107594): Disabling LPT Port Support for VM.
2026-04-13 12:50:34 (107594): Disabling Audio Support for VM.
2026-04-13 12:50:34 (107594): Disabling Clipboard Support for VM.
2026-04-13 12:50:34 (107594): Disabling Drag and Drop Support for VM.
2026-04-13 12:50:34 (107594): Adding storage controller(s) to VM.
2026-04-13 12:50:34 (107594): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-04-13 12:50:35 (107594): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-04-13 12:50:35 (107594): forwarding host port 45343 to guest port 80
2026-04-13 12:50:35 (107594): Enabling remote desktop for VM.
2026-04-13 12:50:35 (107594): Required extension pack not installed, remote desktop not enabled.
2026-04-13 12:50:35 (107594): Enabling shared directory for VM.
2026-04-13 12:50:35 (107594): Starting VM using VBoxManage interface. (boinc_c1b7ca4cbd39e68f, slot#2)
2026-04-13 12:50:36 (107594): Successfully started VM. (PID = '108070')
2026-04-13 12:50:36 (107594): Reporting VM Process ID to BOINC.
2026-04-13 12:50:36 (107594): Guest Log: BIOS: VirtualBox 7.0.16
2026-04-13 12:50:36 (107594): Guest Log: CPUID EDX: 0x178bfbff
2026-04-13 12:50:36 (107594): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-04-13 12:50:36 (107594): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-04-13 12:50:36 (107594): VM state change detected. (old = 'poweredoff', new = 'running')
2026-04-13 12:50:36 (107594): Detected: Web Application Enabled (http://localhost:45343)
2026-04-13 12:50:36 (107594): Preference change detected
2026-04-13 12:50:36 (107594): Setting CPU throttle for VM. (100%)
2026-04-13 12:50:36 (107594): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-04-13 12:50:38 (107594): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-04-13 12:50:38 (107594): Guest Log: BIOS: Booting from Hard Disk...
2026-04-13 12:50:41 (107594): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-04-13 12:50:41 (107594): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-04-13 12:50:41 (107594): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-04-13 12:50:47 (107594): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-04-13 12:50:47 (107594): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-04-13 12:50:53 (107594): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-04-13 12:50:53 (107594): Guest Log: 00:00:00.000211 main     Log opened 2026-04-13T10:50:51.357531000Z
2026-04-13 12:50:53 (107594): Guest Log: 00:00:00.000307 main     OS Product: Linux
2026-04-13 12:50:53 (107594): Guest Log: 00:00:00.000332 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-04-13 12:50:53 (107594): Guest Log: 00:00:00.000353 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-04-13 12:50:53 (107594): Guest Log: 00:00:00.000372 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-04-13 12:50:53 (107594): Guest Log: 00:00:00.000373 main     Process ID: 1316
2026-04-13 12:50:53 (107594): Guest Log: 00:00:00.000374 main     Package type: LINUX_64BITS_GENERIC
2026-04-13 12:50:53 (107594): Guest Log: 00:00:00.001294 main     5.2.32 r132073 started. Verbose level = 0
2026-04-13 12:50:53 (107594): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-04-13 12:50:53 (107594): Guest Log: [INFO] Mounting shared directory
2026-04-13 12:50:53 (107594): Guest Log: [INFO] Checking for init_data.xml
2026-04-13 12:50:58 (107594): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-04-13 12:50:58 (107594): Guest Log: [INFO] Detected branch: prod
2026-04-13 12:50:58 (107594): Guest Log: This is the prod version of the ATLAS job wrapper
2026-04-13 12:50:58 (107594): Guest Log: Copying input files
2026-04-13 12:50:58 (107594): Guest Log: Copied input files into RunAtlas.
2026-04-13 12:50:58 (107594): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-04-13 12:50:58 (107594): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-04-13 12:50:58 (107594): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-04-13 12:50:58 (107594): Guest Log: Further information can be found at the LHC@home message board.
2026-04-13 12:51:06 (107594): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-04-13 12:51:07 (107594): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-04-13 12:51:07 (107594): Guest Log: 2.6.3.0 1590 0 32212 158413 3 1 3117755 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-04-13 12:51:08 (107594): Guest Log: copied the webapp to /var/www
2026-04-13 12:51:08 (107594): Guest Log: ATHENA_PROC_NUMBER=5
2026-04-13 12:51:08 (107594): Guest Log: ATHENA_CORE_NUMBER=5
2026-04-13 12:51:09 (107594): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-04-13 12:51:09 (107594): Guest Log:  *** Starting ATLAS job. (PandaID=7088425473 taskID=49263191) ***
2026-04-13 14:29:36 (107594): Status Report: Elapsed Time: '6000.000000'
2026-04-13 14:29:36 (107594): Status Report: CPU Time: '27950.960000'
2026-04-13 16:00:16 (107594): Guest Log:  *** Job finished ***
2026-04-13 16:00:16 (107594): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 13:59:42,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:05,741 | INFO     | [monitor] cgroup control has ended
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:07,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139744505997120)>', '<ExcThread(monitor, started 139743916443392)>']
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:08,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:08,562 | INFO     | [monitor] control thread has ended
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:12,763 | INFO     | all workflow threads have been joined
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:12,763 | INFO     | end of generic workflow (traces error code: 0)
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:12,763 | INFO     | traces error code: 0
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:12,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:12,943 [wrapper] ==== pilot stdout END ====
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:12,950 [wrapper] ==== wrapper stdout RESUME ====
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:12,956 [wrapper] pilotpid: 6005
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:12,963 [wrapper] Pilot exit status: 0
2026-04-13 16:00:16 (107594): Guest Log: ./runpilot2-wrapper.sh: line 1019: /usr/bin/xargs: Input/output error
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:15,001 [wrapper] pandaids: 
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:15,031 [wrapper] cleanup supervisor_pilot 27367 6006
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:15,039 [wrapper] Test setup, not cleaning
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:15,043 [wrapper] apfmon messages muted
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:15,047 [wrapper] ==== wrapper stdout END ====
2026-04-13 16:00:16 (107594): Guest Log: 2026-04-13 14:00:15,051 [wrapper] ==== wrapper stderr END ====
2026-04-13 16:00:16 (107594): Guest Log:  *** Error codes and diagnostics ***
2026-04-13 16:00:16 (107594): Guest Log:     "exeErrorCode": 68,
2026-04-13 16:00:16 (107594): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2026-04-13 16:00:16 (107594): Guest Log:     "pilotErrorCode": 1305,
2026-04-13 16:00:16 (107594): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2026-04-13 16:00:16 (107594): Guest Log:  *** Listing of results directory ***
2026-04-13 16:00:16 (107594): Guest Log: total 5088
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 atlas atlas  644190 Apr 12 17:39 pilot3.tar.gz
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 atlas atlas    5094 Apr 12 18:29 queuedata.json
2026-04-13 16:00:16 (107594): Guest Log: -rwx------. 1 atlas atlas   36322 Apr 12 18:29 runpilot2-wrapper.sh
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 atlas atlas    8845 Apr 13 10:50 init_data.xml
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 atlas atlas   15665 Apr 13 10:50 start_atlas.sh
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 atlas atlas  656927 Apr 13 10:50 input.tar.gz
2026-04-13 16:00:16 (107594): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 13 10:50 EVNT.49263189._001575.pool.root.1 -> /data/./ATLAS.root_0
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 atlas atlas    2578 Apr 13 10:51 pandaJob.out
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas  997783 Apr 13 10:51 agis_schedconf.cvmfs.json
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas     428 Apr 13 10:51 workernode_map.json
2026-04-13 16:00:16 (107594): Guest Log: drwx------. 5 atlas atlas    4096 Apr 13 10:51 pilot3
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas    1047 Apr 13 13:56 memory_monitor_summary.json
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas  334122 Apr 13 13:57 log.49263191._060373.job.log.tgz.1
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas       0 Apr 13 13:57 agis_ddmendpoints.agis.ALL.json
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas       0 Apr 13 13:57 cric_ddmendpoints.json
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas      95 Apr 13 13:58 pilot_heartbeat.json
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas    8888 Apr 13 13:59 heartbeat_new.json
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas    8849 Apr 13 13:59 heartbeat.json
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas    4800 Apr 13 14:00 pilotlog.txt
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas 1031310 Apr 13 14:00 log.49263191._060373.job.log.1
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 atlas atlas    8225 Apr 13 14:00 runtime_log.err
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 atlas atlas     410 Apr 13 14:00 runtime_log
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas 1382400 Apr 13 14:00 result.tar.gz
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas     188 Apr 13 14:00 output.list
2026-04-13 16:00:16 (107594): Guest Log: -rw-------. 1 atlas atlas     659 Apr 13 14:00 e4970c81d8fa.diag
2026-04-13 16:00:16 (107594): Guest Log: Looking for outputfile HITS.49263191._060373.pool.root.1
2026-04-13 16:00:16 (107594): Guest Log: No HITS file was produced
2026-04-13 16:00:16 (107594): Guest Log: Successfully finished the ATLAS job!
2026-04-13 16:00:16 (107594): Guest Log: Copying the results back to the shared directory!
2026-04-13 16:00:16 (107594): Guest Log:  *** Contents of shared directory: ***
2026-04-13 16:00:16 (107594): Guest Log: total 220324
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 root root 223531960 Apr 13 10:50 ATLAS.root_0
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 root root      8845 Apr 13 10:50 init_data.xml
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 root root    656927 Apr 13 10:50 input.tar.gz
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 root root   1382400 Apr 13 14:00 result.tar.gz
2026-04-13 16:00:16 (107594): Guest Log: -rw-r--r--. 1 root root     15665 Apr 13 10:50 start_atlas.sh
2026-04-13 16:00:16 (107594): Guest Log:  *** Success! Shutting down the machine. ***
2026-04-13 16:00:16 (107594): VM Completion File Detected.
2026-04-13 16:00:16 (107594): Powering off VM.
2026-04-13 16:00:16 (107594): Successfully stopped VM.
2026-04-13 16:00:16 (107594): Deregistering VM. (boinc_c1b7ca4cbd39e68f, slot#2)
2026-04-13 16:00:16 (107594): Removing network bandwidth throttle group from VM.
2026-04-13 16:00:16 (107594): Removing VM from VirtualBox.
2026-04-13 16:00:21 (107594): called boinc_finish(0)

</stderr_txt>
]]>

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