Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:07:14 (1550001): wrapper (7.7.26015): starting
09:07:14 (1550001): wrapper: running run_atlas (--nthreads 12)
[2026-04-13 09:07:14] Arguments: --nthreads 12
[2026-04-13 09:07:14] Threads: 12
[2026-04-13 09:07:14] Checking for CVMFS
[2026-04-13 09:07:14] No cvmfs_config command found, will try listing directly
[2026-04-13 09:07:14] CVMFS is ok
[2026-04-13 09:07:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-13 09:07:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-13 09:07:14] Further information can be found at the LHC@home message board.
[2026-04-13 09:07:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 09:07:14] Checking for apptainer binary...
[2026-04-13 09:07:14] which: no apptainer in ((null))
[2026-04-13 09:07:14] apptainer is not installed, using version from CVMFS
[2026-04-13 09:07:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 09:07:14] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/16/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-04-13 09:07:14] apptainer works
[2026-04-13 09:07:14] Set ATHENA_PROC_NUMBER=12
[2026-04-13 09:07:14] Set ATHENA_CORE_NUMBER=12
[2026-04-13 09:07:14] Starting ATLAS job with PandaID=7072144917
[2026-04-13 09:07:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 09:35:35]  *** The last 200 lines of the pilot log: ***
[2026-04-13 09:35:35]  filetype=log
[2026-04-13 09:35:35]  guid=c95b1efa-a9d0-4977-949c-ec04872c4e5a
[2026-04-13 09:35:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-13 09:35:35]  is_altstaged=None
[2026-04-13 09:35:35]  is_tar=False
[2026-04-13 09:35:35]  lfn=log.49263191._005408.job.log.tgz.1
[2026-04-13 09:35:35]  mtime=0
[2026-04-13 09:35:35]  protocol_id=None
[2026-04-13 09:35:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-13 09:35:35]  replicas=None
[2026-04-13 09:35:35]  scope=mc23_13p6TeV
[2026-04-13 09:35:35]  status=None
[2026-04-13 09:35:35]  status_code=0
[2026-04-13 09:35:35]  storage_token=
[2026-04-13 09:35:35]  surl=/var/lib/boinc/var/slot72/slots/16/PanDA_Pilot-7072144917/log.49263191._005408.job.log.tgz.1
[2026-04-13 09:35:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/e4/log.49263191._005408.job.log.tgz.1
[2026-04-13 09:35:35]  workdir=None
[2026-04-13 09:35:35] ]
[2026-04-13 09:35:35] 2026-04-13 07:34:36,971 | INFO     | transferring file log.49263191._005408.job.log.tgz.1 from /var/lib/boinc/var/slot72/slots/16/PanDA_Pilot-7072144917/log.49263191._005408.job.log.tgz.1 to /var/lib/
[2026-04-13 09:35:35] 2026-04-13 07:34:36,972 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot72/slots/16/PanDA_Pilot-7072144917/log.49263191._005408.job.log.tgz.1 /var/lib/boinc/var/slot72/slots/16/
[2026-04-13 09:35:35] 2026-04-13 07:34:36,985 | INFO     | adding to output.list: log.49263191._005408.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/e4/log.49263191._005408.job.log.tg
[2026-04-13 09:35:35] 2026-04-13 07:34:36,986 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-13 09:35:35] 2026-04-13 07:34:36,986 | INFO     | summary of transferred files:
[2026-04-13 09:35:35] 2026-04-13 07:34:36,986 | INFO     |  -- lfn=log.49263191._005408.job.log.tgz.1, status_code=0, status=transferred
[2026-04-13 09:35:35] 2026-04-13 07:34:36,986 | INFO     | stage-out finished correctly
[2026-04-13 09:35:35] 2026-04-13 07:34:37,213 | WARNING  | process 1560257 can no longer be monitored (due to stat problems) - aborting
[2026-04-13 09:35:35] 2026-04-13 07:34:37,213 | INFO     | using path: /var/lib/boinc/var/slot72/slots/16/PanDA_Pilot-7072144917/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 09:35:35] 2026-04-13 07:34:37,540 | INFO     | number of running child processes to parent process 1560257: 1
[2026-04-13 09:35:35] 2026-04-13 07:34:37,540 | INFO     | maximum number of monitored processes: 6
[2026-04-13 09:35:35] 2026-04-13 07:34:38,012 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-13 09:35:35] 2026-04-13 07:34:38,234 | INFO     | job 7072144917 has state=finished
[2026-04-13 09:35:35] 2026-04-13 07:34:38,234 | INFO     | preparing for final server update for job 7072144917 in state='finished'
[2026-04-13 09:35:35] 2026-04-13 07:34:38,695 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-13 09:35:35] 2026-04-13 07:34:38,695 | INFO     | reading metadata from: /var/lib/boinc/var/slot72/slots/16/PanDA_Pilot-7072144917/jobReport.json
[2026-04-13 09:35:35] 2026-04-13 07:34:38,696 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot72/slots/16/workernode_map.json
[2026-04-13 09:35:35] 2026-04-13 07:34:38,697 | INFO     | this job has now completed (state=finished)
[2026-04-13 09:35:35] 2026-04-13 07:34:38,697 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-13 09:35:35] 2026-04-13 07:34:38,697 | INFO     | log transfer has been attempted: DONE
[2026-04-13 09:35:35] 2026-04-13 07:34:38,697 | INFO     | job 7072144917 has finished - writing final server update
[2026-04-13 09:35:35] 2026-04-13 07:34:38,697 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3982176/.job.ad'
[2026-04-13 09:35:35] 2026-04-13 07:34:38,697 | INFO     | total number of processed events: 400 (read)
[2026-04-13 09:35:35] 2026-04-13 07:34:38,714 | INFO     | using path: /var/lib/boinc/var/slot72/slots/16/PanDA_Pilot-7072144917/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 09:35:35] 2026-04-13 07:34:38,714 | INFO     | extracted standard info from prmon json
[2026-04-13 09:35:35] 2026-04-13 07:34:38,714 | INFO     | extracted standard memory fields from prmon json
[2026-04-13 09:35:35] 2026-04-13 07:34:38,715 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-13 09:35:35] 2026-04-13 07:34:38,715 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-13 09:35:35] 2026-04-13 07:34:38,715 | INFO     | fitting pss+swap vs Time
[2026-04-13 09:35:35] 2026-04-13 07:34:38,715 | INFO     | sum of square deviations: 2474465.0
[2026-04-13 09:35:35] 2026-04-13 07:34:38,715 | INFO     | sum of deviations: 18528109.5
[2026-04-13 09:35:35] 2026-04-13 07:34:38,715 | INFO     | mean x (centered): 0.0
[2026-04-13 09:35:35] 2026-04-13 07:34:38,715 | INFO     | mean y: 2685797.55
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | intersect: 2685797.55
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | chi2: 1.1811462462296108e-05
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | current memory leak: 7.49 B/s (using 20 data points, chi2=0.00)
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | could have reported an average CPU frequency of 3627 MHz (4 samples)
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | ..............................
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | . Timing measurements:
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | . get job = 0 s
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | . initial setup = 4 s
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | . payload setup = 6 s
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | . stage-in = 0 s
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | . payload execution = 1610 s
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | . stage-out = 0 s
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | . log creation = 0 s
[2026-04-13 09:35:35] 2026-04-13 07:34:38,716 | INFO     | ..............................
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | 
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | job summary report
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | --------------------------------------------------
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | PanDA job id: 7072144917
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | task id: 49263191
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | errors: (none)
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | pilot state: finished 
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | transexitcode: 0
[2026-04-13 09:35:35] 2026-04-13 07:34:39,171 | INFO     | exeerrorcode: 0
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | exeerrordiag: 
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | exitcode: 0
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | exitmsg: OK
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | cpuconsumptiontime: 17179 s
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | nevents: 400
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | neventsw: 0
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | pid: 1560257
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | pgrp: 1560257
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | corecount: 12
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | event service: False
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | sizes: {0: 2281528, 10: 2281528, 1620: 2306338, 1621: 2315360, 1622: 2315610}
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | --------------------------------------------------
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | 
[2026-04-13 09:35:35] 2026-04-13 07:34:39,172 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/16
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 09:35:35] 2026-04-13 07:34:39,189 | INFO     | job 7072144917 has completed (purged errors)
[2026-04-13 09:35:35] 2026-04-13 07:34:39,190 | INFO     | overall cleanup function is called
[2026-04-13 09:35:35] 2026-04-13 07:34:40,199 | INFO     | --- collectZombieJob: --- 10, [1560257]
[2026-04-13 09:35:35] 2026-04-13 07:34:40,199 | INFO     | zombie collector waiting for pid 1560257
[2026-04-13 09:35:35] 2026-04-13 07:34:40,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 09:35:35] 2026-04-13 07:34:40,199 | INFO     | collected zombie processes
[2026-04-13 09:35:35] 2026-04-13 07:34:40,199 | INFO     | will attempt to kill all subprocesses of pid=1560257
[2026-04-13 09:35:35] 2026-04-13 07:34:40,539 | INFO     | process IDs to be killed: [1560257] (in reverse order)
[2026-04-13 09:35:35] 2026-04-13 07:34:40,680 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 09:35:35] 2026-04-13 07:34:40,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 09:35:35] 2026-04-13 07:34:40,703 | INFO     | did not find any defunct processes belonging to 1560257
[2026-04-13 09:35:35] 2026-04-13 07:34:40,724 | INFO     | did not find any defunct processes belonging to 1560257
[2026-04-13 09:35:35] 2026-04-13 07:34:40,724 | INFO     | Ready for new job
[2026-04-13 09:35:35] 2026-04-13 07:34:40,725 | INFO     | **************************************
[2026-04-13 09:35:35] 2026-04-13 07:34:40,725 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 09:35:35] 2026-04-13 07:34:40,725 | INFO     | **************************************
[2026-04-13 09:35:35] 2026-04-13 07:34:40,725 | INFO     | 
[2026-04-13 09:35:35] 2026-04-13 07:34:40,731 | INFO     | architecture information:
[2026-04-13 09:35:35] 2026-04-13 07:34:40,731 | INFO     | executing command: cat /etc/os-release
[2026-04-13 09:35:35] 2026-04-13 07:34:40,745 | INFO     | cat /etc/os-release:
[2026-04-13 09:35:35] NAME="CentOS Linux"
[2026-04-13 09:35:35] VERSION="7 (Core)"
[2026-04-13 09:35:35] ID="centos"
[2026-04-13 09:35:35] ID_LIKE="rhel fedora"
[2026-04-13 09:35:35] VERSION_ID="7"
[2026-04-13 09:35:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 09:35:35] ANSI_COLOR="0;31"
[2026-04-13 09:35:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 09:35:35] HOME_URL="https://www.centos.org/"
[2026-04-13 09:35:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 09:35:35] 
[2026-04-13 09:35:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 09:35:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 09:35:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 09:35:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 09:35:35] 
[2026-04-13 09:35:35] 2026-04-13 07:34:40,745 | INFO     | **************************************
[2026-04-13 09:35:35] 2026-04-13 07:34:41,248 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/16
[2026-04-13 09:35:35] 2026-04-13 07:34:41,261 | INFO     | sufficient remaining disk space (189664329728 B)
[2026-04-13 09:35:35] 2026-04-13 07:34:41,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 09:35:35] 2026-04-13 07:34:41,262 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 09:35:35] 2026-04-13 07:34:41,262 | INFO     | update_server=False
[2026-04-13 09:35:35] 2026-04-13 07:34:41,262 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 09:35:35] 2026-04-13 07:34:41,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 09:35:35] 2026-04-13 07:34:41,262 | INFO     | aborting loop
[2026-04-13 09:35:35] 2026-04-13 07:34:41,288 | INFO     | all data control threads have been joined
[2026-04-13 09:35:35] 2026-04-13 07:34:42,267 | INFO     | [job] job monitor thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:42,268 | INFO     | [job] retrieve thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:42,292 | INFO     | [data] control thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:42,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 09:35:35] 2026-04-13 07:34:42,624 | INFO     | all payload control threads have been joined
[2026-04-13 09:35:35] 2026-04-13 07:34:42,825 | INFO     | all job control threads have been joined
[2026-04-13 09:35:35] 2026-04-13 07:34:43,121 | INFO     | [payload] failed_post thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:43,258 | INFO     | [job] validate thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:43,352 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:43,376 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:43,416 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:43,626 | INFO     | [payload] control thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:43,708 | INFO     | [data] copytool_in thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:43,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 09:35:35] 2026-04-13 07:34:43,826 | INFO     | [job] control thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:43,833 | INFO     | [payload] validate_post thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:44,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 09:35:35] 2026-04-13 07:34:44,549 | INFO     | [data] copytool_out thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:44,773 | INFO     | [job] queue monitor thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:48,070 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:34:51,591 | INFO     | job.realtimelogging is not enabled
[2026-04-13 09:35:35] 2026-04-13 07:34:52,596 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 09:35:35] 2026-04-13 07:35:11,068 | INFO     | PID=1554532 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-13 09:35:35] 2026-04-13 07:35:11,068 | INFO     | .. there are 15 such processes running
[2026-04-13 09:35:35] 2026-04-13 07:35:11,068 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 09:35:35] 2026-04-13 07:35:11,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 09:35:35] 2026-04-13 07:35:11,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 09:35:35] 2026-04-13 07:35:27,956 | INFO     | [monitor] cgroup control has ended
[2026-04-13 09:35:35] 2026-04-13 07:35:29,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23005283432256)>', '<ExcThread(monitor, started 23004968875776)>']
[2026-04-13 09:35:35] 2026-04-13 07:35:30,159 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 09:35:35] 2026-04-13 07:35:30,159 | INFO     | [monitor] control thread has ended
[2026-04-13 09:35:35] 2026-04-13 07:35:34,794 | INFO     | all workflow threads have been joined
[2026-04-13 09:35:35] 2026-04-13 07:35:34,794 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 09:35:35] 2026-04-13 07:35:34,794 | INFO     | traces error code: 0
[2026-04-13 09:35:35] 2026-04-13 07:35:34,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 09:35:35] 2026-04-13 07:35:34,903 [wrapper] ==== pilot stdout END ====
[2026-04-13 09:35:35] 2026-04-13 07:35:34,905 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 09:35:35] 2026-04-13 07:35:34,907 [wrapper] pilotpid: 1554532
[2026-04-13 09:35:35] 2026-04-13 07:35:34,908 [wrapper] Pilot exit status: 0
[2026-04-13 09:35:35] 2026-04-13 07:35:34,914 [wrapper] pandaids: 7072144917
[2026-04-13 09:35:35] 2026-04-13 07:35:35,012 [wrapper] cleanup supervisor_pilot 1660397 1554533
[2026-04-13 09:35:35] 2026-04-13 07:35:35,014 [wrapper] Test setup, not cleaning
[2026-04-13 09:35:35] 2026-04-13 07:35:35,016 [wrapper] apfmon messages muted
[2026-04-13 09:35:35] 2026-04-13 07:35:35,017 [wrapper] ==== wrapper stdout END ====
[2026-04-13 09:35:35] 2026-04-13 07:35:35,019 [wrapper] ==== wrapper stderr END ====
[2026-04-13 09:35:35]  *** Error codes and diagnostics ***
[2026-04-13 09:35:35]     "exeErrorCode": 0,
[2026-04-13 09:35:35]     "pilotErrorCode": 0,
[2026-04-13 09:35:35]  *** Listing of results directory ***
[2026-04-13 09:35:35] total 415680
[2026-04-13 09:35:35] -rwx------. 1 boinc boinc     36322 Mar 31 22:53 runpilot2-wrapper.sh
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc    644190 Apr 10 13:49 pilot3.tar.gz
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc      5094 Apr 11 10:40 queuedata.json
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc       100 Apr 13 09:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 09:35:35] -rwxr-xr-x. 1 boinc boinc      7986 Apr 13 09:07 run_atlas
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc       105 Apr 13 09:07 job.xml
[2026-04-13 09:35:35] -rw-r--r--. 2 boinc boinc 226861491 Apr 13 09:07 EVNT.49263189._000142.pool.root.1
[2026-04-13 09:35:35] -rw-r--r--. 2 boinc boinc     15665 Apr 13 09:07 start_atlas.sh
[2026-04-13 09:35:35] drwxrwx--x. 2 boinc boinc      4096 Apr 13 09:07 shared
[2026-04-13 09:35:35] -rw-r--r--. 2 boinc boinc    656927 Apr 13 09:07 input.tar.gz
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc      6626 Apr 13 09:07 init_data.xml
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc         0 Apr 13 09:07 boinc_lockfile
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc      2575 Apr 13 09:07 pandaJob.out
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc    997775 Apr 13 09:07 agis_schedconf.cvmfs.json
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc   1511579 Apr 13 09:07 agis_ddmendpoints.agis.ALL.json
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc       444 Apr 13 09:07 workernode_map.json
[2026-04-13 09:35:35] drwx------. 5 boinc boinc      4096 Apr 13 09:07 pilot3
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc 193676627 Apr 13 09:34 HITS.49263191._005408.pool.root.1
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc       487 Apr 13 09:34 boinc_task_state.xml
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc      1031 Apr 13 09:34 memory_monitor_summary.json
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc    328178 Apr 13 09:34 log.49263191._005408.job.log.tgz.1
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc      6376 Apr 13 09:34 heartbeat_new.json
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc      6267 Apr 13 09:34 heartbeat.json
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc        95 Apr 13 09:35 pilot_heartbeat.json
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc      8192 Apr 13 09:35 boinc_mmap_file
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc        27 Apr 13 09:35 wrapper_checkpoint.txt
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc      4902 Apr 13 09:35 pilotlog.txt
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc    199535 Apr 13 09:35 log.49263191._005408.job.log.1
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc       357 Apr 13 09:35 output.list
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc       410 Apr 13 09:35 runtime_log
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc    542720 Apr 13 09:35 result.tar.gz
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc      8845 Apr 13 09:35 runtime_log.err
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc       661 Apr 13 09:35 342d89dd8639.diag
[2026-04-13 09:35:35] -rw-r--r--. 1 boinc boinc     21085 Apr 13 09:35 stderr.txt
[2026-04-13 09:35:35] HITS file was successfully produced:
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc 193676627 Apr 13 09:34 shared/HITS.pool.root.1
[2026-04-13 09:35:35]  *** Contents of shared directory: ***
[2026-04-13 09:35:35] total 411888
[2026-04-13 09:35:35] -rw-r--r--. 2 boinc boinc 226861491 Apr 13 09:07 ATLAS.root_0
[2026-04-13 09:35:35] -rw-r--r--. 2 boinc boinc     15665 Apr 13 09:07 start_atlas.sh
[2026-04-13 09:35:35] -rw-r--r--. 2 boinc boinc    656927 Apr 13 09:07 input.tar.gz
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc 193676627 Apr 13 09:34 HITS.pool.root.1
[2026-04-13 09:35:35] -rw-------. 1 boinc boinc    542720 Apr 13 09:35 result.tar.gz
09:35:36 (1550001): run_atlas exited; CPU time 17222.846039
09:35:36 (1550001): called boinc_finish(0)

</stderr_txt>
]]>

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