Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:41:47 (3810): wrapper (7.7.26015): starting
17:41:47 (3810): wrapper: running run_atlas (--nthreads 8)
[2026-04-12 17:41:47] Arguments: --nthreads 8
[2026-04-12 17:41:47] Threads: 8
[2026-04-12 17:41:47] Checking for CVMFS
[2026-04-12 17:41:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 17:41:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 17:41:47] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 17:41:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 17:41:47] 2.11.0.0 5680 5910 62156 158384 2 188 2974004 4096001 6419 130560 0 2155940 99.684 875565 321 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-04-12 17:41:47] CVMFS is ok
[2026-04-12 17:41:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 17:41:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 17:41:47] Further information can be found at the LHC@home message board.
[2026-04-12 17:41:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 17:41:47] Checking for apptainer binary...
[2026-04-12 17:41:47] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-04-12 17:41:47] apptainer is not installed, using version from CVMFS
[2026-04-12 17:41:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 17:41:47] WARNING: Environment variable TMPDIR already has value [/tmp/job_11493848/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node354
[2026-04-12 17:41:47] apptainer works
[2026-04-12 17:41:47] Set ATHENA_PROC_NUMBER=8
[2026-04-12 17:41:47] Set ATHENA_CORE_NUMBER=8
[2026-04-12 17:41:47] Starting ATLAS job with PandaID=7082843836
[2026-04-12 17:41:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11493848/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 19:52:11]  *** The last 200 lines of the pilot log: ***
[2026-04-12 19:52:11] 2026-04-12 17:51:38,983 | INFO     | total number of processed events: 400 (read)
[2026-04-12 19:52:11] 2026-04-12 17:51:38,999 | INFO     | using path: /tmp/job_11493848/atlas/pilot/slots/0/PanDA_Pilot-7082843836/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,000 | INFO     | extracted standard info from prmon json
[2026-04-12 19:52:11] 2026-04-12 17:51:39,000 | INFO     | extracted standard memory fields from prmon json
[2026-04-12 19:52:11] 2026-04-12 17:51:39,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-12 19:52:11] 2026-04-12 17:51:39,000 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-12 19:52:11] 2026-04-12 17:51:39,001 | INFO     | fitting pss+swap vs Time
[2026-04-12 19:52:11] 2026-04-12 17:51:39,001 | INFO     | sum of square deviations: 650252192.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | sum of deviations: 13389174351.5
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | mean x (centered): 0.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | mean y: 2524084.4609375
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | intersect: 2524084.4609375
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | chi2: 1.8482669542890058
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | sum of square deviations: 576985702.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | sum of deviations: 20667132145.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | mean x (centered): 0.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | mean y: 2538694.6585365855
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | intersect: 2538694.6585365855
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | chi2: 1.1663671467600831
[2026-04-12 19:52:11] 2026-04-12 17:51:39,002 | INFO     | current chi2=1.1663671467600831 (change=36.894010681007764 %)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | sum of square deviations: 509440249.5
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | sum of deviations: 19597411134.999996
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | mean x (centered): 0.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | mean y: 2536278.186440678
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | intersect: 2536278.186440678
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | chi2: 1.1669700795374196
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | current chi2=1.1669700795374196 (change=-0.05169322361413307 %)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | right removable region: 117
[2026-04-12 19:52:11] 2026-04-12 17:51:39,003 | INFO     | sum of square deviations: 576985702.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | sum of deviations: -3291800340.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | mean x (centered): 0.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | mean y: 2558220.7804878047
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | intersect: 2558220.7804878047
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | chi2: 0.7092442811284727
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | current chi2=0.7092442811284727 (change=61.62652372901912 %)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | sum of square deviations: 509440249.5
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | sum of deviations: -4266256979.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | mean x (centered): 0.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | mean y: 2560403.881355932
[2026-04-12 19:52:11] 2026-04-12 17:51:39,004 | INFO     | intersect: 2560403.881355932
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | chi2: 0.7077300521081279
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | current chi2=0.7077300521081279 (change=0.2134989397356208 %)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | left removable region: 10
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | sum of square deviations: 379832238.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | sum of deviations: 2748904793.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | mean x (centered): 0.0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | mean y: 2576915.476635514
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | intersect: 2576915.476635514
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | chi2: 0.0058873484324555286
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | current memory leak: 7.24 B/s (using 107 data points, chi2=0.01)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | could have reported an average CPU frequency of 3177 MHz (8 samples)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | ..............................
[2026-04-12 19:52:11] 2026-04-12 17:51:39,005 | INFO     | . Timing measurements:
[2026-04-12 19:52:11] 2026-04-12 17:51:39,006 | INFO     | . get job = 0 s
[2026-04-12 19:52:11] 2026-04-12 17:51:39,006 | INFO     | . initial setup = 2 s
[2026-04-12 19:52:11] 2026-04-12 17:51:39,006 | INFO     | . payload setup = 4 s
[2026-04-12 19:52:11] 2026-04-12 17:51:39,006 | INFO     | . stage-in = 0 s
[2026-04-12 19:52:11] 2026-04-12 17:51:39,006 | INFO     | . payload execution = 7762 s
[2026-04-12 19:52:11] 2026-04-12 17:51:39,006 | INFO     | . stage-out = 0 s
[2026-04-12 19:52:11] 2026-04-12 17:51:39,006 | INFO     | . log creation = 0 s
[2026-04-12 19:52:11] 2026-04-12 17:51:39,006 | INFO     | ..............................
[2026-04-12 19:52:11] 2026-04-12 17:51:39,101 | INFO     | 
[2026-04-12 19:52:11] 2026-04-12 17:51:39,101 | INFO     | job summary report
[2026-04-12 19:52:11] 2026-04-12 17:51:39,101 | INFO     | --------------------------------------------------
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | PanDA job id: 7082843836
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | task id: 49515477
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | errors: (none)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | pilot state: finished 
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | transexitcode: 0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | exeerrorcode: 0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | exeerrordiag: 
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | exitcode: 0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | exitmsg: OK
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | cpuconsumptiontime: 57903 s
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | nevents: 400
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | neventsw: 0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | pid: 14719
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | pgrp: 14719
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | corecount: 8
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | event service: False
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | sizes: {0: 2279784, 1: 2281667, 11: 2281667, 7771: 2309506, 7773: 2318590, 7774: 2318728}
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | --------------------------------------------------
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | 
[2026-04-12 19:52:11] 2026-04-12 17:51:39,102 | INFO     | executing command: ls -lF /tmp/job_11493848/atlas/pilot/slots/0
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | job 7082843836 has completed (purged errors)
[2026-04-12 19:52:11] 2026-04-12 17:51:39,112 | INFO     | overall cleanup function is called
[2026-04-12 19:52:11] 2026-04-12 17:51:40,118 | INFO     | --- collectZombieJob: --- 10, [14719]
[2026-04-12 19:52:11] 2026-04-12 17:51:40,118 | INFO     | zombie collector waiting for pid 14719
[2026-04-12 19:52:11] 2026-04-12 17:51:40,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 19:52:11] 2026-04-12 17:51:40,118 | INFO     | collected zombie processes
[2026-04-12 19:52:11] 2026-04-12 17:51:40,118 | INFO     | will attempt to kill all subprocesses of pid=14719
[2026-04-12 19:52:11] 2026-04-12 17:51:40,208 | INFO     | process IDs to be killed: [14719] (in reverse order)
[2026-04-12 19:52:11] 2026-04-12 17:51:40,239 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 19:52:11] 2026-04-12 17:51:40,240 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 19:52:11] 2026-04-12 17:51:40,243 | INFO     | did not find any defunct processes belonging to 14719
[2026-04-12 19:52:11] 2026-04-12 17:51:40,245 | INFO     | did not find any defunct processes belonging to 14719
[2026-04-12 19:52:11] 2026-04-12 17:51:40,246 | INFO     | Ready for new job
[2026-04-12 19:52:11] 2026-04-12 17:51:40,246 | INFO     | **************************************
[2026-04-12 19:52:11] 2026-04-12 17:51:40,246 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 19:52:11] 2026-04-12 17:51:40,246 | INFO     | **************************************
[2026-04-12 19:52:11] 2026-04-12 17:51:40,246 | INFO     | 
[2026-04-12 19:52:11] 2026-04-12 17:51:40,260 | INFO     | architecture information:
[2026-04-12 19:52:11] 2026-04-12 17:51:40,260 | INFO     | executing command: cat /etc/os-release
[2026-04-12 19:52:11] 2026-04-12 17:51:40,266 | INFO     | cat /etc/os-release:
[2026-04-12 19:52:11] NAME="CentOS Linux"
[2026-04-12 19:52:11] VERSION="7 (Core)"
[2026-04-12 19:52:11] ID="centos"
[2026-04-12 19:52:11] ID_LIKE="rhel fedora"
[2026-04-12 19:52:11] VERSION_ID="7"
[2026-04-12 19:52:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 19:52:11] ANSI_COLOR="0;31"
[2026-04-12 19:52:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 19:52:11] HOME_URL="https://www.centos.org/"
[2026-04-12 19:52:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 19:52:11] 
[2026-04-12 19:52:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 19:52:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 19:52:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 19:52:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 19:52:11] 
[2026-04-12 19:52:11] 2026-04-12 17:51:40,266 | INFO     | **************************************
[2026-04-12 19:52:11] 2026-04-12 17:51:40,769 | INFO     | executing command: df -mP /tmp/job_11493848/atlas/pilot/slots/0
[2026-04-12 19:52:11] 2026-04-12 17:51:40,774 | INFO     | sufficient remaining disk space (225924087808 B)
[2026-04-12 19:52:11] 2026-04-12 17:51:40,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 19:52:11] 2026-04-12 17:51:40,775 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 19:52:11] 2026-04-12 17:51:40,775 | INFO     | update_server=False
[2026-04-12 19:52:11] 2026-04-12 17:51:40,775 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 19:52:11] 2026-04-12 17:51:40,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 19:52:11] 2026-04-12 17:51:40,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 19:52:11] 2026-04-12 17:51:41,553 | INFO     | all data control threads have been joined
[2026-04-12 19:52:11] 2026-04-12 17:51:41,557 | INFO     | all payload control threads have been joined
[2026-04-12 19:52:11] 2026-04-12 17:51:41,780 | INFO     | [job] retrieve thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:41,780 | INFO     | [job] queue monitor thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:41,890 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:41,890 | INFO     | [data] copytool_in thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:42,024 | INFO     | all job control threads have been joined
[2026-04-12 19:52:11] 2026-04-12 17:51:42,060 | INFO     | [payload] validate_post thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:42,558 | INFO     | [data] control thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:42,562 | INFO     | [payload] control thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:42,780 | INFO     | [data] copytool_out thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:42,867 | WARNING  | process 14719 can no longer be monitored (due to stat problems) - aborting
[2026-04-12 19:52:11] 2026-04-12 17:51:42,907 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:42,911 | INFO     | [payload] failed_post thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:42,941 | INFO     | using path: /tmp/job_11493848/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 19:52:11] 2026-04-12 17:51:43,029 | INFO     | number of running child processes to parent process 14719: 1
[2026-04-12 19:52:11] 2026-04-12 17:51:43,029 | INFO     | [job] control thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:43,029 | INFO     | maximum number of monitored processes: 6
[2026-04-12 19:52:11] 2026-04-12 17:51:43,029 | INFO     | aborting job monitoring since job object (job id=7082843836) has expired
[2026-04-12 19:52:11] 2026-04-12 17:51:43,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 19:52:11] 2026-04-12 17:51:43,029 | INFO     | will abort loop
[2026-04-12 19:52:11] 2026-04-12 17:51:43,171 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:43,248 | INFO     | [job] validate thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:43,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 19:52:11] 2026-04-12 17:51:44,035 | INFO     | [job] job monitor thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:47,527 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:51:51,595 | INFO     | job.realtimelogging is not enabled
[2026-04-12 19:52:11] 2026-04-12 17:51:52,601 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 19:52:11] 2026-04-12 17:52:06,505 | INFO     | [monitor] cgroup control has ended
[2026-04-12 19:52:11] 2026-04-12 17:52:06,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058988288)>']
[2026-04-12 19:52:11] 2026-04-12 17:52:10,892 | INFO     | PID=8669 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-12 19:52:11] 2026-04-12 17:52:10,892 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 19:52:11] 2026-04-12 17:52:10,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 19:52:11] 2026-04-12 17:52:10,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 19:52:11] 2026-04-12 17:52:10,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 19:52:11] 2026-04-12 17:52:10,892 | INFO     | [monitor] control thread has ended
[2026-04-12 19:52:11] 2026-04-12 17:52:11,627 | INFO     | all workflow threads have been joined
[2026-04-12 19:52:11] 2026-04-12 17:52:11,627 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 19:52:11] 2026-04-12 17:52:11,627 | INFO     | traces error code: 0
[2026-04-12 19:52:11] 2026-04-12 17:52:11,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 19:52:11] 2026-04-12 17:52:11,682 [wrapper] ==== pilot stdout END ====
[2026-04-12 19:52:11] 2026-04-12 17:52:11,684 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 19:52:11] 2026-04-12 17:52:11,685 [wrapper] pilotpid: 8669
[2026-04-12 19:52:11] 2026-04-12 17:52:11,686 [wrapper] Pilot exit status: 0
[2026-04-12 19:52:11] 2026-04-12 17:52:11,690 [wrapper] pandaids: 7082843836
[2026-04-12 19:52:11] 2026-04-12 17:52:11,711 [wrapper] cleanup supervisor_pilot 18317 8670
[2026-04-12 19:52:11] 2026-04-12 17:52:11,712 [wrapper] Test setup, not cleaning
[2026-04-12 19:52:11] 2026-04-12 17:52:11,713 [wrapper] apfmon messages muted
[2026-04-12 19:52:11] 2026-04-12 17:52:11,714 [wrapper] ==== wrapper stdout END ====
[2026-04-12 19:52:11] 2026-04-12 17:52:11,715 [wrapper] ==== wrapper stderr END ====
[2026-04-12 19:52:11]  *** Error codes and diagnostics ***
[2026-04-12 19:52:11]     "exeErrorCode": 0,
[2026-04-12 19:52:11]     "pilotErrorCode": 0,
[2026-04-12 19:52:11]  *** Listing of results directory ***
[2026-04-12 19:52:11] total 478976
[2026-04-12 19:52:11] -rwx------ 1 mf493845 unix-user     36322 Apr 12 11:47 runpilot2-wrapper.sh
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      5094 Apr 12 11:49 queuedata.json
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user    644190 Apr 12 11:49 pilot3.tar.gz
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user       100 Apr 12 16:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 19:52:11] -rwxr-xr-x 1 mf493845 unix-user      7986 Apr 12 16:40 run_atlas
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user       105 Apr 12 16:40 job.xml
[2026-04-12 19:52:11] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 12 17:41 start_atlas.sh
[2026-04-12 19:52:11] drwxrwx--x 2 mf493845 unix-user       100 Apr 12 17:41 shared
[2026-04-12 19:52:11] -rw-r--r-- 2 mf493845 unix-user    656923 Apr 12 17:41 input.tar.gz
[2026-04-12 19:52:11] -rw-r--r-- 2 mf493845 unix-user 241039674 Apr 12 17:41 EVNT.49515475._000018.pool.root.1
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user         0 Apr 12 17:41 boinc_setup_complete
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      6305 Apr 12 17:41 init_data.xml
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      8192 Apr 12 17:41 boinc_mmap_file
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user         0 Apr 12 17:41 boinc_lockfile
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      2610 Apr 12 17:41 pandaJob.out
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user    997759 Apr 12 17:41 agis_schedconf.cvmfs.json
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user   1511579 Apr 12 17:41 agis_ddmendpoints.agis.ALL.json
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user       420 Apr 12 17:41 workernode_map.json
[2026-04-12 19:52:11] drwx------ 5 mf493845 unix-user       480 Apr 12 17:41 pilot3
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user 243261846 Apr 12 19:51 HITS.49515477._000602.pool.root.1
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      1022 Apr 12 19:51 memory_monitor_summary.json
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user    319420 Apr 12 19:51 log.49515477._000602.job.log.tgz.1
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user        95 Apr 12 19:51 pilot_heartbeat.json
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      6332 Apr 12 19:51 heartbeat_new.json
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      6222 Apr 12 19:51 heartbeat.json
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      5358 Apr 12 19:52 pilotlog.txt
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user    751811 Apr 12 19:52 log.49515477._000602.job.log.1
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user       357 Apr 12 19:52 output.list
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user       410 Apr 12 19:52 runtime_log
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user   1085440 Apr 12 19:52 result.tar.gz
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user      8841 Apr 12 19:52 runtime_log.err
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user       644 Apr 12 19:52 6a426f4d3769.diag
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user     21462 Apr 12 19:52 stderr.txt
[2026-04-12 19:52:11] HITS file was successfully produced:
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user 243261846 Apr 12 19:51 shared/HITS.pool.root.1
[2026-04-12 19:52:11]  *** Contents of shared directory: ***
[2026-04-12 19:52:11] total 474676
[2026-04-12 19:52:11] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 12 17:41 start_atlas.sh
[2026-04-12 19:52:11] -rw-r--r-- 2 mf493845 unix-user    656923 Apr 12 17:41 input.tar.gz
[2026-04-12 19:52:11] -rw-r--r-- 2 mf493845 unix-user 241039674 Apr 12 17:41 ATLAS.root_0
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user 243261846 Apr 12 19:51 HITS.pool.root.1
[2026-04-12 19:52:11] -rw------- 1 mf493845 unix-user   1085440 Apr 12 19:52 result.tar.gz
19:52:13 (3810): run_atlas exited; CPU time 58018.324478
19:52:13 (3810): called boinc_finish(0)

</stderr_txt>
]]>

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