Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:56:13 (3706754): wrapper (7.7.26015): starting
01:56:13 (3706754): wrapper: running run_atlas (--nthreads 4)
[2026-04-13 01:56:13] Arguments: --nthreads 4
[2026-04-13 01:56:13] Threads: 4
[2026-04-13 01:56:13] Checking for CVMFS
[2026-04-13 01:56:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 01:56:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 01:56:13] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 01:56:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 01:56:14] 2.9.2.0 2924976 4376 94716 158395 2 50 34047601 36864000 0 130560 0 2677125 99.988 167727 17662 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-13 01:56:14] CVMFS is ok
[2026-04-13 01:56:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-13 01:56:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-13 01:56:14] Further information can be found at the LHC@home message board.
[2026-04-13 01:56:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 01:56:14] Checking for apptainer binary...
[2026-04-13 01:56:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 01:56:14] Running /usr/bin/apptainer --version
[2026-04-13 01:56:14] apptainer version 1.4.1-1.1
[2026-04-13 01:56:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 01:56:14] thA309
[2026-04-13 01:56:14] apptainer works
[2026-04-13 01:56:14] Set ATHENA_PROC_NUMBER=4
[2026-04-13 01:56:14] Set ATHENA_CORE_NUMBER=4
[2026-04-13 01:56:14] Starting ATLAS job with PandaID=7071840535
[2026-04-13 01:56:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 04:31:46]  *** The last 200 lines of the pilot log: ***
[2026-04-13 04:31:46] 2026-04-13 02:30:42,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 04:31:46] 2026-04-13 02:30:42,393 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 04:31:46] 2026-04-13 02:30:42,393 | INFO     | job 7071840535 has completed (purged errors)
[2026-04-13 04:31:46] 2026-04-13 02:30:42,393 | INFO     | overall cleanup function is called
[2026-04-13 04:31:46] 2026-04-13 02:30:43,400 | INFO     | --- collectZombieJob: --- 10, [3715378]
[2026-04-13 04:31:46] 2026-04-13 02:30:43,400 | INFO     | zombie collector waiting for pid 3715378
[2026-04-13 04:31:46] 2026-04-13 02:30:43,400 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 04:31:46] 2026-04-13 02:30:43,400 | INFO     | collected zombie processes
[2026-04-13 04:31:46] 2026-04-13 02:30:43,400 | INFO     | will attempt to kill all subprocesses of pid=3715378
[2026-04-13 04:31:46] 2026-04-13 02:30:43,451 | INFO     | process IDs to be killed: [3715378] (in reverse order)
[2026-04-13 04:31:46] 2026-04-13 02:30:43,488 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 04:31:46] 2026-04-13 02:30:43,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 04:31:46] 2026-04-13 02:30:43,490 | INFO     | did not find any defunct processes belonging to 3715378
[2026-04-13 04:31:46] 2026-04-13 02:30:43,492 | INFO     | did not find any defunct processes belonging to 3715378
[2026-04-13 04:31:46] 2026-04-13 02:30:43,492 | INFO     | Ready for new job
[2026-04-13 04:31:46] 2026-04-13 02:30:43,493 | INFO     | **************************************
[2026-04-13 04:31:46] 2026-04-13 02:30:43,493 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 04:31:46] 2026-04-13 02:30:43,493 | INFO     | **************************************
[2026-04-13 04:31:46] 2026-04-13 02:30:43,493 | INFO     | 
[2026-04-13 04:31:46] 2026-04-13 02:30:43,493 | INFO     | architecture information:
[2026-04-13 04:31:46] 2026-04-13 02:30:43,493 | INFO     | executing command: cat /etc/os-release
[2026-04-13 04:31:46] 2026-04-13 02:30:43,508 | INFO     | cat /etc/os-release:
[2026-04-13 04:31:46] NAME="CentOS Linux"
[2026-04-13 04:31:46] VERSION="7 (Core)"
[2026-04-13 04:31:46] ID="centos"
[2026-04-13 04:31:46] ID_LIKE="rhel fedora"
[2026-04-13 04:31:46] VERSION_ID="7"
[2026-04-13 04:31:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 04:31:46] ANSI_COLOR="0;31"
[2026-04-13 04:31:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 04:31:46] HOME_URL="https://www.centos.org/"
[2026-04-13 04:31:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 04:31:46] 
[2026-04-13 04:31:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 04:31:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 04:31:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 04:31:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 04:31:46] 
[2026-04-13 04:31:46] 2026-04-13 02:30:43,508 | INFO     | **************************************
[2026-04-13 04:31:46] 2026-04-13 02:30:44,012 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-13 04:31:46] 2026-04-13 02:30:44,031 | INFO     | sufficient remaining disk space (224963592192 B)
[2026-04-13 04:31:46] 2026-04-13 02:30:44,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 04:31:46] 2026-04-13 02:30:44,031 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 04:31:46] 2026-04-13 02:30:44,032 | INFO     | update_server=False
[2026-04-13 04:31:46] 2026-04-13 02:30:44,032 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 04:31:46] 2026-04-13 02:30:44,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 04:31:46] 2026-04-13 02:30:44,148 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 04:31:46] 2026-04-13 02:30:44,148 | INFO     | aborting loop
[2026-04-13 04:31:46] 2026-04-13 02:30:44,297 | INFO     | job.realtimelogging is not enabled
[2026-04-13 04:31:46] 2026-04-13 02:30:44,397 | INFO     | all payload control threads have been joined
[2026-04-13 04:31:46] 2026-04-13 02:30:44,631 | INFO     | all data control threads have been joined
[2026-04-13 04:31:46] 2026-04-13 02:30:44,899 | INFO     | all job control threads have been joined
[2026-04-13 04:31:46] 2026-04-13 02:30:45,037 | INFO     | [job] retrieve thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,038 | INFO     | [job] queue monitor thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,055 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 04:31:46] 2026-04-13 02:30:45,154 | INFO     | [job] job monitor thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,303 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,318 | INFO     | [payload] failed_post thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,361 | INFO     | [job] validate thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,403 | INFO     | [payload] control thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,441 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,461 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,526 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 04:31:46] 2026-04-13 02:30:45,637 | INFO     | [data] control thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,723 | INFO     | [data] copytool_in thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,901 | INFO     | [payload] validate_post thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:45,905 | INFO     | [job] control thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:47,061 | INFO     | [data] copytool_out thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:30:49,597 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 04:31:46] 2026-04-13 02:31:13,629 | INFO     | PID=3710871 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-13 04:31:46] 2026-04-13 02:31:13,629 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 04:31:46] 2026-04-13 02:31:13,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 04:31:46] 2026-04-13 02:31:13,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 04:31:46] 2026-04-13 02:31:39,429 | INFO     | [monitor] cgroup control has ended
[2026-04-13 04:31:46] 2026-04-13 02:31:41,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140316295468864)>', '<ExcThread(monitor, started 140315373598464)>']
[2026-04-13 04:31:46] 2026-04-13 02:31:41,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 04:31:46] 2026-04-13 02:31:41,779 | INFO     | [monitor] control thread has ended
[2026-04-13 04:31:46] 2026-04-13 02:31:46,225 | INFO     | all workflow threads have been joined
[2026-04-13 04:31:46] 2026-04-13 02:31:46,226 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 04:31:46] 2026-04-13 02:31:46,226 | INFO     | traces error code: 0
[2026-04-13 04:31:46] 2026-04-13 02:31:46,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 04:31:46] 2026-04-13 02:31:46,309 [wrapper] ==== pilot stdout END ====
[2026-04-13 04:31:46] 2026-04-13 02:31:46,313 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 04:31:46] 2026-04-13 02:31:46,318 [wrapper] pilotpid: 3710871
[2026-04-13 04:31:46] 2026-04-13 02:31:46,322 [wrapper] Pilot exit status: 0
[2026-04-13 04:31:46] 2026-04-13 02:31:46,335 [wrapper] pandaids: 7071840535
[2026-04-13 04:31:46] 2026-04-13 02:31:46,360 [wrapper] cleanup supervisor_pilot 3722256 3710872
[2026-04-13 04:31:46] 2026-04-13 02:31:46,364 [wrapper] Test setup, not cleaning
[2026-04-13 04:31:46] 2026-04-13 02:31:46,369 [wrapper] apfmon messages muted
[2026-04-13 04:31:46] 2026-04-13 02:31:46,373 [wrapper] ==== wrapper stdout END ====
[2026-04-13 04:31:46] 2026-04-13 02:31:46,378 [wrapper] ==== wrapper stderr END ====
[2026-04-13 04:31:46]  *** Error codes and diagnostics ***
[2026-04-13 04:31:46]     "exeErrorCode": 0,
[2026-04-13 04:31:46]     "pilotErrorCode": 0,
[2026-04-13 04:31:46]  *** Listing of results directory ***
[2026-04-13 04:31:46] total 469608
[2026-04-13 04:31:46] -rwx------ 1 boinc boinc     36322 Apr 12 11:47 runpilot2-wrapper.sh
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc      5094 Apr 12 11:49 queuedata.json
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc    644190 Apr 12 11:49 pilot3.tar.gz
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc       100 Apr 13 01:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 04:31:46] -rwxr-xr-x 1 boinc boinc      7986 Apr 13 01:56 run_atlas
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc       105 Apr 13 01:56 job.xml
[2026-04-13 04:31:46] -rw-r--r-- 2 boinc boinc 243193419 Apr 13 01:56 EVNT.49131531._000005.pool.root.1
[2026-04-13 04:31:46] -rw-r--r-- 2 boinc boinc    656921 Apr 13 01:56 input.tar.gz
[2026-04-13 04:31:46] -rw-r--r-- 2 boinc boinc     15665 Apr 13 01:56 start_atlas.sh
[2026-04-13 04:31:46] drwxrwx--x 2 boinc boinc      4096 Apr 13 01:56 shared
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc         0 Apr 13 01:56 boinc_setup_complete
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc      6292 Apr 13 01:56 init_data.xml
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc         0 Apr 13 01:56 boinc_lockfile
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc      2604 Apr 13 01:56 pandaJob.out
[2026-04-13 04:31:46] -rw------- 1 boinc boinc    997759 Apr 13 01:56 agis_schedconf.cvmfs.json
[2026-04-13 04:31:46] -rw------- 1 boinc boinc   1511579 Apr 13 01:56 agis_ddmendpoints.agis.ALL.json
[2026-04-13 04:31:46] -rw------- 1 boinc boinc       426 Apr 13 01:56 workernode_map.json
[2026-04-13 04:31:46] drwx------ 5 boinc boinc      4096 Apr 13 01:56 pilot3
[2026-04-13 04:31:46] -rw------- 1 boinc boinc        95 Apr 13 04:30 pilot_heartbeat.json
[2026-04-13 04:31:46] -rw------- 1 boinc boinc 231336238 Apr 13 04:30 HITS.49179468._000360.pool.root.1
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc       487 Apr 13 04:30 boinc_task_state.xml
[2026-04-13 04:31:46] -rw------- 1 boinc boinc      1032 Apr 13 04:30 memory_monitor_summary.json
[2026-04-13 04:31:46] -rw------- 1 boinc boinc    284112 Apr 13 04:30 log.49179468._000360.job.log.tgz.1
[2026-04-13 04:31:46] -rw------- 1 boinc boinc      6330 Apr 13 04:30 heartbeat_new.json
[2026-04-13 04:31:46] -rw------- 1 boinc boinc      6221 Apr 13 04:30 heartbeat.json
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc        27 Apr 13 04:31 wrapper_checkpoint.txt
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc      8192 Apr 13 04:31 boinc_mmap_file
[2026-04-13 04:31:46] -rw------- 1 boinc boinc      4819 Apr 13 04:31 pilotlog.txt
[2026-04-13 04:31:46] -rw------- 1 boinc boinc    868069 Apr 13 04:31 log.49179468._000360.job.log.1
[2026-04-13 04:31:46] -rw------- 1 boinc boinc       357 Apr 13 04:31 output.list
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc       410 Apr 13 04:31 runtime_log
[2026-04-13 04:31:46] -rw------- 1 boinc boinc   1167360 Apr 13 04:31 result.tar.gz
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc      8518 Apr 13 04:31 runtime_log.err
[2026-04-13 04:31:46] -rw------- 1 boinc boinc       658 Apr 13 04:31 6a19c1d652ad.diag
[2026-04-13 04:31:46] -rw-r--r-- 1 boinc boinc     10890 Apr 13 04:31 stderr.txt
[2026-04-13 04:31:46] HITS file was successfully produced:
[2026-04-13 04:31:46] -rw------- 1 boinc boinc 231336238 Apr 13 04:30 shared/HITS.pool.root.1
[2026-04-13 04:31:46]  *** Contents of shared directory: ***
[2026-04-13 04:31:46] total 465220
[2026-04-13 04:31:46] -rw-r--r-- 2 boinc boinc 243193419 Apr 13 01:56 ATLAS.root_0
[2026-04-13 04:31:46] -rw-r--r-- 2 boinc boinc    656921 Apr 13 01:56 input.tar.gz
[2026-04-13 04:31:46] -rw-r--r-- 2 boinc boinc     15665 Apr 13 01:56 start_atlas.sh
[2026-04-13 04:31:46] -rw------- 1 boinc boinc 231336238 Apr 13 04:30 HITS.pool.root.1
[2026-04-13 04:31:46] -rw------- 1 boinc boinc   1167360 Apr 13 04:31 result.tar.gz
04:31:47 (3706754): run_atlas exited; CPU time 35555.976439
04:31:47 (3706754): called boinc_finish(0)

</stderr_txt>
]]>

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