Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:39:20 (3692236): wrapper (7.7.26015): starting
00:39:20 (3692236): wrapper: running run_atlas (--nthreads 4)
[2026-04-13 00:39:20] Arguments: --nthreads 4
[2026-04-13 00:39:20] Threads: 4
[2026-04-13 00:39:20] Checking for CVMFS
[2026-04-13 00:39:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-13 00:39:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-13 00:39:20] Running cvmfs_config stat atlas.cern.ch
[2026-04-13 00:39:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-13 00:39:20] 2.9.2.0 2924976 4299 94864 158394 3 50 34041491 36864000 0 130560 0 2622282 99.988 166378 17684 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-13 00:39:20] CVMFS is ok
[2026-04-13 00:39:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-13 00:39:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-13 00:39:20] Further information can be found at the LHC@home message board.
[2026-04-13 00:39:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-13 00:39:20] Checking for apptainer binary...
[2026-04-13 00:39:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-13 00:39:20] Running /usr/bin/apptainer --version
[2026-04-13 00:39:20] apptainer version 1.4.1-1.1
[2026-04-13 00:39:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-13 00:39:20] thA309
[2026-04-13 00:39:20] apptainer works
[2026-04-13 00:39:20] Set ATHENA_PROC_NUMBER=4
[2026-04-13 00:39:20] Set ATHENA_CORE_NUMBER=4
[2026-04-13 00:39:20] Starting ATLAS job with PandaID=7088015325
[2026-04-13 00:39:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 01:56:09]  *** The last 200 lines of the pilot log: ***
[2026-04-13 01:56:09] 2026-04-12 23:55:36,638 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 01:56:09] 2026-04-12 23:55:36,638 | INFO     | job 7088015325 has completed (purged errors)
[2026-04-13 01:56:09] 2026-04-12 23:55:36,638 | INFO     | overall cleanup function is called
[2026-04-13 01:56:09] 2026-04-12 23:55:37,645 | INFO     | --- collectZombieJob: --- 10, [3700874]
[2026-04-13 01:56:09] 2026-04-12 23:55:37,645 | INFO     | zombie collector waiting for pid 3700874
[2026-04-13 01:56:09] 2026-04-12 23:55:37,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 01:56:09] 2026-04-12 23:55:37,645 | INFO     | collected zombie processes
[2026-04-13 01:56:09] 2026-04-12 23:55:37,645 | INFO     | will attempt to kill all subprocesses of pid=3700874
[2026-04-13 01:56:09] 2026-04-12 23:55:37,694 | INFO     | process IDs to be killed: [3700874] (in reverse order)
[2026-04-13 01:56:09] 2026-04-12 23:55:37,731 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 01:56:09] 2026-04-12 23:55:37,731 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 01:56:09] 2026-04-12 23:55:37,733 | INFO     | did not find any defunct processes belonging to 3700874
[2026-04-13 01:56:09] 2026-04-12 23:55:37,734 | INFO     | did not find any defunct processes belonging to 3700874
[2026-04-13 01:56:09] 2026-04-12 23:55:37,734 | INFO     | Ready for new job
[2026-04-13 01:56:09] 2026-04-12 23:55:37,735 | INFO     | **************************************
[2026-04-13 01:56:09] 2026-04-12 23:55:37,735 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 01:56:09] 2026-04-12 23:55:37,735 | INFO     | **************************************
[2026-04-13 01:56:09] 2026-04-12 23:55:37,735 | INFO     | 
[2026-04-13 01:56:09] 2026-04-12 23:55:37,735 | INFO     | architecture information:
[2026-04-13 01:56:09] 2026-04-12 23:55:37,735 | INFO     | executing command: cat /etc/os-release
[2026-04-13 01:56:09] 2026-04-12 23:55:37,751 | INFO     | cat /etc/os-release:
[2026-04-13 01:56:09] NAME="CentOS Linux"
[2026-04-13 01:56:09] VERSION="7 (Core)"
[2026-04-13 01:56:09] ID="centos"
[2026-04-13 01:56:09] ID_LIKE="rhel fedora"
[2026-04-13 01:56:09] VERSION_ID="7"
[2026-04-13 01:56:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 01:56:09] ANSI_COLOR="0;31"
[2026-04-13 01:56:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 01:56:09] HOME_URL="https://www.centos.org/"
[2026-04-13 01:56:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 01:56:09] 
[2026-04-13 01:56:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 01:56:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 01:56:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 01:56:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 01:56:09] 
[2026-04-13 01:56:09] 2026-04-12 23:55:37,751 | INFO     | **************************************
[2026-04-13 01:56:09] 2026-04-12 23:55:38,255 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-13 01:56:09] 2026-04-12 23:55:38,273 | INFO     | sufficient remaining disk space (225034895360 B)
[2026-04-13 01:56:09] 2026-04-12 23:55:38,274 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 01:56:09] 2026-04-12 23:55:38,274 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 01:56:09] 2026-04-12 23:55:38,274 | INFO     | update_server=False
[2026-04-13 01:56:09] 2026-04-12 23:55:38,274 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 01:56:09] 2026-04-12 23:55:38,274 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 01:56:09] 2026-04-12 23:55:39,079 | INFO     | all data control threads have been joined
[2026-04-13 01:56:09] 2026-04-12 23:55:39,279 | INFO     | [job] retrieve thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:39,287 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:39,307 | INFO     | all job control threads have been joined
[2026-04-13 01:56:09] 2026-04-12 23:55:39,359 | INFO     | all payload control threads have been joined
[2026-04-13 01:56:09] 2026-04-12 23:55:39,494 | INFO     | [data] copytool_in thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:39,620 | WARNING  | process 3700874 can no longer be monitored (due to stat problems) - aborting
[2026-04-13 01:56:09] 2026-04-12 23:55:39,655 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-13 01:56:09] 2026-04-12 23:55:39,699 | INFO     | number of running child processes to parent process 3700874: 1
[2026-04-13 01:56:09] 2026-04-12 23:55:39,700 | INFO     | maximum number of monitored processes: 6
[2026-04-13 01:56:09] 2026-04-12 23:55:39,700 | INFO     | aborting job monitoring since job object (job id=7088015325) has expired
[2026-04-13 01:56:09] 2026-04-12 23:55:39,700 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 01:56:09] 2026-04-12 23:55:39,700 | INFO     | will abort loop
[2026-04-13 01:56:09] 2026-04-12 23:55:40,082 | INFO     | [data] control thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,280 | INFO     | [data] copytool_out thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,313 | INFO     | [job] control thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,333 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,365 | INFO     | [payload] control thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,522 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,665 | INFO     | [job] validate thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,666 | INFO     | [payload] validate_post thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,705 | INFO     | [job] job monitor thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,716 | INFO     | [monitor] cgroup control has ended
[2026-04-13 01:56:09] 2026-04-12 23:55:40,755 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:40,824 | INFO     | [payload] failed_post thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:41,138 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 01:56:09] 2026-04-12 23:55:41,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 01:56:09] 2026-04-12 23:55:42,144 | INFO     | [job] queue monitor thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:45,288 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 01:56:09] 2026-04-12 23:55:45,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140306347345728)>', '<ExcThread(monitor, started 140305475024640)>']
[2026-04-13 01:56:09] 2026-04-12 23:55:50,804 | INFO     | all workflow threads have been joined
[2026-04-13 01:56:09] 2026-04-12 23:55:50,804 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 01:56:09] 2026-04-12 23:55:50,805 | INFO     | traces error code: 0
[2026-04-13 01:56:09] 2026-04-12 23:55:50,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 01:56:09] 2026-04-12 23:56:09,193 | INFO     | PID=3696353 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-13 01:56:09] 2026-04-12 23:56:09,194 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 01:56:09] 2026-04-12 23:56:09,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 01:56:09] 2026-04-12 23:56:09,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 01:56:09] 2026-04-12 23:56:09,194 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 01:56:09] 2026-04-12 23:56:09,194 | INFO     | [monitor] control thread has ended
[2026-04-13 01:56:09] 2026-04-12 23:56:09,271 [wrapper] ==== pilot stdout END ====
[2026-04-13 01:56:09] 2026-04-12 23:56:09,276 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 01:56:09] 2026-04-12 23:56:09,280 [wrapper] pilotpid: 3696353
[2026-04-13 01:56:09] 2026-04-12 23:56:09,284 [wrapper] Pilot exit status: 0
[2026-04-13 01:56:09] 2026-04-12 23:56:09,296 [wrapper] pandaids: 7088015325
[2026-04-13 01:56:09] 2026-04-12 23:56:09,319 [wrapper] cleanup supervisor_pilot 3706565 3696354
[2026-04-13 01:56:09] 2026-04-12 23:56:09,323 [wrapper] Test setup, not cleaning
[2026-04-13 01:56:09] 2026-04-12 23:56:09,327 [wrapper] apfmon messages muted
[2026-04-13 01:56:09] 2026-04-12 23:56:09,331 [wrapper] ==== wrapper stdout END ====
[2026-04-13 01:56:09] 2026-04-12 23:56:09,335 [wrapper] ==== wrapper stderr END ====
[2026-04-13 01:56:09]  *** Error codes and diagnostics ***
[2026-04-13 01:56:09]     "exeErrorCode": 0,
[2026-04-13 01:56:09]     "pilotErrorCode": 0,
[2026-04-13 01:56:09]  *** Listing of results directory ***
[2026-04-13 01:56:09] total 412420
[2026-04-13 01:56:09] -rwx------ 1 boinc boinc     36322 Apr 12 10:47 runpilot2-wrapper.sh
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc      5094 Apr 12 10:47 queuedata.json
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc    644190 Apr 12 10:47 pilot3.tar.gz
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc       100 Apr 13 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 01:56:09] -rwxr-xr-x 1 boinc boinc      7986 Apr 13 00:39 run_atlas
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc       105 Apr 13 00:39 job.xml
[2026-04-13 01:56:09] -rw-r--r-- 2 boinc boinc 223762330 Apr 13 00:39 EVNT.49263189._001441.pool.root.1
[2026-04-13 01:56:09] -rw-r--r-- 2 boinc boinc    656916 Apr 13 00:39 input.tar.gz
[2026-04-13 01:56:09] -rw-r--r-- 2 boinc boinc     15665 Apr 13 00:39 start_atlas.sh
[2026-04-13 01:56:09] drwxrwx--x 2 boinc boinc      4096 Apr 13 00:39 shared
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc         0 Apr 13 00:39 boinc_setup_complete
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc      6292 Apr 13 00:39 init_data.xml
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc         0 Apr 13 00:39 boinc_lockfile
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc      2577 Apr 13 00:39 pandaJob.out
[2026-04-13 01:56:09] -rw------- 1 boinc boinc    997767 Apr 13 00:39 agis_schedconf.cvmfs.json
[2026-04-13 01:56:09] -rw------- 1 boinc boinc   1511579 Apr 13 00:39 agis_ddmendpoints.agis.ALL.json
[2026-04-13 01:56:09] -rw------- 1 boinc boinc       427 Apr 13 00:39 workernode_map.json
[2026-04-13 01:56:09] drwx------ 5 boinc boinc      4096 Apr 13 00:39 pilot3
[2026-04-13 01:56:09] -rw------- 1 boinc boinc 193157321 Apr 13 01:55 HITS.49263191._056866.pool.root.1
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc       487 Apr 13 01:55 boinc_task_state.xml
[2026-04-13 01:56:09] -rw------- 1 boinc boinc      1017 Apr 13 01:55 memory_monitor_summary.json
[2026-04-13 01:56:09] -rw------- 1 boinc boinc    227815 Apr 13 01:55 log.49263191._056866.job.log.tgz.1
[2026-04-13 01:56:09] -rw------- 1 boinc boinc      6330 Apr 13 01:55 heartbeat_new.json
[2026-04-13 01:56:09] -rw------- 1 boinc boinc      6221 Apr 13 01:55 heartbeat.json
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc        27 Apr 13 01:55 wrapper_checkpoint.txt
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc      8192 Apr 13 01:55 boinc_mmap_file
[2026-04-13 01:56:09] -rw------- 1 boinc boinc       747 Apr 13 01:56 pilotlog.txt
[2026-04-13 01:56:09] -rw------- 1 boinc boinc        95 Apr 13 01:56 pilot_heartbeat.json
[2026-04-13 01:56:09] -rw------- 1 boinc boinc    450136 Apr 13 01:56 log.49263191._056866.job.log.1
[2026-04-13 01:56:09] -rw------- 1 boinc boinc       357 Apr 13 01:56 output.list
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc       410 Apr 13 01:56 runtime_log
[2026-04-13 01:56:09] -rw------- 1 boinc boinc    696320 Apr 13 01:56 result.tar.gz
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc      8518 Apr 13 01:56 runtime_log.err
[2026-04-13 01:56:09] -rw------- 1 boinc boinc       657 Apr 13 01:56 5c2739bb8357.diag
[2026-04-13 01:56:09] -rw-r--r-- 1 boinc boinc     11322 Apr 13 01:56 stderr.txt
[2026-04-13 01:56:09] HITS file was successfully produced:
[2026-04-13 01:56:09] -rw------- 1 boinc boinc 193157321 Apr 13 01:55 shared/HITS.pool.root.1
[2026-04-13 01:56:09]  *** Contents of shared directory: ***
[2026-04-13 01:56:09] total 408500
[2026-04-13 01:56:09] -rw-r--r-- 2 boinc boinc 223762330 Apr 13 00:39 ATLAS.root_0
[2026-04-13 01:56:09] -rw-r--r-- 2 boinc boinc    656916 Apr 13 00:39 input.tar.gz
[2026-04-13 01:56:09] -rw-r--r-- 2 boinc boinc     15665 Apr 13 00:39 start_atlas.sh
[2026-04-13 01:56:09] -rw------- 1 boinc boinc 193157321 Apr 13 01:55 HITS.pool.root.1
[2026-04-13 01:56:09] -rw------- 1 boinc boinc    696320 Apr 13 01:56 result.tar.gz
01:56:10 (3692236): run_atlas exited; CPU time 16750.296036
01:56:10 (3692236): called boinc_finish(0)

</stderr_txt>
]]>

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