Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:48:28 (1142703): wrapper (7.7.26015): starting
22:48:28 (1142703): wrapper: running run_atlas (--nthreads 3)
[2026-04-12 22:48:28] Arguments: --nthreads 3
[2026-04-12 22:48:28] Threads: 3
[2026-04-12 22:48:28] Checking for CVMFS
[2026-04-12 22:48:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 22:48:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 22:48:30] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 22:48:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 22:48:30] 2.9.2.0 492636 4215 86072 158390 1 50 26225691 36864001 0 130560 0 2552415 99.988 159685 15818 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 22:48:30] CVMFS is ok
[2026-04-12 22:48:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 22:48:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 22:48:30] Further information can be found at the LHC@home message board.
[2026-04-12 22:48:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 22:48:30] Checking for apptainer binary...
[2026-04-12 22:48:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 22:48:30] Running /usr/bin/apptainer --version
[2026-04-12 22:48:30] apptainer version 1.4.1-1.1
[2026-04-12 22:48:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 22:48:30] thA332
[2026-04-12 22:48:30] apptainer works
[2026-04-12 22:48:30] Set ATHENA_PROC_NUMBER=3
[2026-04-12 22:48:30] Set ATHENA_CORE_NUMBER=3
[2026-04-12 22:48:30] Starting ATLAS job with PandaID=7087764565
[2026-04-12 22:48:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-13 00:19:10]  *** The last 200 lines of the pilot log: ***
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | job 7087764565 has completed (purged errors)
[2026-04-13 00:19:10] 2026-04-12 22:18:38,305 | INFO     | overall cleanup function is called
[2026-04-13 00:19:10] 2026-04-12 22:18:39,312 | INFO     | --- collectZombieJob: --- 10, [1151170]
[2026-04-13 00:19:10] 2026-04-12 22:18:39,312 | INFO     | zombie collector waiting for pid 1151170
[2026-04-13 00:19:10] 2026-04-12 22:18:39,312 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-13 00:19:10] 2026-04-12 22:18:39,312 | INFO     | collected zombie processes
[2026-04-13 00:19:10] 2026-04-12 22:18:39,312 | INFO     | will attempt to kill all subprocesses of pid=1151170
[2026-04-13 00:19:10] 2026-04-12 22:18:39,354 | INFO     | process IDs to be killed: [1151170] (in reverse order)
[2026-04-13 00:19:10] 2026-04-12 22:18:39,378 | WARNING  | found no corresponding commands to process id(s)
[2026-04-13 00:19:10] 2026-04-12 22:18:39,378 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-13 00:19:10] 2026-04-12 22:18:39,379 | INFO     | did not find any defunct processes belonging to 1151170
[2026-04-13 00:19:10] 2026-04-12 22:18:39,380 | INFO     | did not find any defunct processes belonging to 1151170
[2026-04-13 00:19:10] 2026-04-12 22:18:39,381 | INFO     | Ready for new job
[2026-04-13 00:19:10] 2026-04-12 22:18:39,381 | INFO     | **************************************
[2026-04-13 00:19:10] 2026-04-12 22:18:39,381 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-13 00:19:10] 2026-04-12 22:18:39,381 | INFO     | **************************************
[2026-04-13 00:19:10] 2026-04-12 22:18:39,381 | INFO     | 
[2026-04-13 00:19:10] 2026-04-12 22:18:39,382 | INFO     | architecture information:
[2026-04-13 00:19:10] 2026-04-12 22:18:39,382 | INFO     | executing command: cat /etc/os-release
[2026-04-13 00:19:10] 2026-04-12 22:18:39,391 | INFO     | cat /etc/os-release:
[2026-04-13 00:19:10] NAME="CentOS Linux"
[2026-04-13 00:19:10] VERSION="7 (Core)"
[2026-04-13 00:19:10] ID="centos"
[2026-04-13 00:19:10] ID_LIKE="rhel fedora"
[2026-04-13 00:19:10] VERSION_ID="7"
[2026-04-13 00:19:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-13 00:19:10] ANSI_COLOR="0;31"
[2026-04-13 00:19:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-13 00:19:10] HOME_URL="https://www.centos.org/"
[2026-04-13 00:19:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-13 00:19:10] 
[2026-04-13 00:19:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-13 00:19:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-13 00:19:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-13 00:19:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-13 00:19:10] 
[2026-04-13 00:19:10] 2026-04-12 22:18:39,391 | INFO     | **************************************
[2026-04-13 00:19:10] 2026-04-12 22:18:39,894 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-13 00:19:10] 2026-04-12 22:18:39,908 | INFO     | sufficient remaining disk space (232832106496 B)
[2026-04-13 00:19:10] 2026-04-12 22:18:39,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-13 00:19:10] 2026-04-12 22:18:39,908 | INFO     | current server update state: UPDATING_FINAL
[2026-04-13 00:19:10] 2026-04-12 22:18:39,908 | INFO     | update_server=False
[2026-04-13 00:19:10] 2026-04-12 22:18:39,908 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-13 00:19:10] 2026-04-12 22:18:39,908 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-13 00:19:10] 2026-04-12 22:18:39,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-13 00:19:10] 2026-04-12 22:18:39,992 | INFO     | all payload control threads have been joined
[2026-04-13 00:19:10] 2026-04-12 22:18:40,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-13 00:19:10] 2026-04-12 22:18:40,048 | INFO     | aborting loop
[2026-04-13 00:19:10] 2026-04-12 22:18:40,833 | INFO     | all job control threads have been joined
[2026-04-13 00:19:10] 2026-04-12 22:18:40,914 | INFO     | [job] retrieve thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:40,914 | INFO     | [job] queue monitor thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:40,932 | INFO     | all data control threads have been joined
[2026-04-13 00:19:10] 2026-04-12 22:18:40,944 | INFO     | [payload] validate_pre thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:40,981 | INFO     | [data] copytool_in thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:40,997 | INFO     | [payload] control thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:41,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-13 00:19:10] 2026-04-12 22:18:41,054 | INFO     | [job] job monitor thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:41,133 | INFO     | [payload] validate_post thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:41,268 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:41,838 | INFO     | [job] control thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:41,937 | INFO     | [data] control thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:42,213 | INFO     | [payload] failed_post thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:42,265 | INFO     | [job] validate thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:42,380 | INFO     | [job] create_data_payload thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:42,409 | INFO     | [payload] execute_payloads thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:43,038 | INFO     | [data] copytool_out thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:43,915 | INFO     | [data] queue_monitor thread has finished
[2026-04-13 00:19:10] 2026-04-12 22:18:46,459 | INFO     | [monitor] cgroup control has ended
[2026-04-13 00:19:10] 2026-04-12 22:18:48,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074875328320)>', '<ExcThread(monitor, started 140074117232384)>']
[2026-04-13 00:19:10] 2026-04-12 22:18:53,057 | INFO     | all workflow threads have been joined
[2026-04-13 00:19:10] 2026-04-12 22:18:53,057 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-13 00:19:10] 2026-04-12 22:18:53,058 | INFO     | traces error code: 0
[2026-04-13 00:19:10] 2026-04-12 22:18:53,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-13 00:19:10] 2026-04-12 22:19:10,727 | INFO     | PID=1146743 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-13 00:19:10] 2026-04-12 22:19:10,727 | INFO     | found 0 job(s) in 20 queues
[2026-04-13 00:19:10] 2026-04-12 22:19:10,727 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-13 00:19:10] 2026-04-12 22:19:10,727 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-13 00:19:10] 2026-04-12 22:19:10,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-13 00:19:10] 2026-04-12 22:19:10,727 | CRITICAL | thread 'MainThread' is not alive
[2026-04-13 00:19:10] 2026-04-12 22:19:10,727 | INFO     | [monitor] control thread has ended
[2026-04-13 00:19:10] 2026-04-12 22:19:10,775 [wrapper] ==== pilot stdout END ====
[2026-04-13 00:19:10] 2026-04-12 22:19:10,778 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-13 00:19:10] 2026-04-12 22:19:10,780 [wrapper] pilotpid: 1146743
[2026-04-13 00:19:10] 2026-04-12 22:19:10,782 [wrapper] Pilot exit status: 0
[2026-04-13 00:19:10] 2026-04-12 22:19:10,790 [wrapper] pandaids: 7087764565
[2026-04-13 00:19:10] 2026-04-12 22:19:10,805 [wrapper] cleanup supervisor_pilot 1156804 1146744
[2026-04-13 00:19:10] 2026-04-12 22:19:10,808 [wrapper] Test setup, not cleaning
[2026-04-13 00:19:10] 2026-04-12 22:19:10,810 [wrapper] apfmon messages muted
[2026-04-13 00:19:10] 2026-04-12 22:19:10,812 [wrapper] ==== wrapper stdout END ====
[2026-04-13 00:19:10] 2026-04-12 22:19:10,815 [wrapper] ==== wrapper stderr END ====
[2026-04-13 00:19:10]  *** Error codes and diagnostics ***
[2026-04-13 00:19:10]     "exeErrorCode": 0,
[2026-04-13 00:19:10]     "pilotErrorCode": 0,
[2026-04-13 00:19:10]  *** Listing of results directory ***
[2026-04-13 00:19:10] total 420600
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc    644190 Apr 12 05:19 pilot3.tar.gz
[2026-04-13 00:19:10] -rwx------ 1 boinc boinc     36322 Apr 12 06:09 runpilot2-wrapper.sh
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc      5094 Apr 12 06:09 queuedata.json
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc       100 Apr 12 22:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-13 00:19:10] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 22:48 run_atlas
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc       105 Apr 12 22:48 job.xml
[2026-04-13 00:19:10] -rw-r--r-- 2 boinc boinc 225618937 Apr 12 22:48 EVNT.49263189._000612.pool.root.1
[2026-04-13 00:19:10] -rw-r--r-- 2 boinc boinc    656929 Apr 12 22:48 input.tar.gz
[2026-04-13 00:19:10] -rw-r--r-- 2 boinc boinc     15665 Apr 12 22:48 start_atlas.sh
[2026-04-13 00:19:10] drwxrwx--x 2 boinc boinc      4096 Apr 12 22:48 shared
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc         0 Apr 12 22:48 boinc_setup_complete
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc      6354 Apr 12 22:48 init_data.xml
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc         0 Apr 12 22:48 boinc_lockfile
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc      2577 Apr 12 22:48 pandaJob.out
[2026-04-13 00:19:10] -rw------- 1 boinc boinc    997775 Apr 12 22:48 agis_schedconf.cvmfs.json
[2026-04-13 00:19:10] -rw------- 1 boinc boinc   1511579 Apr 12 22:48 agis_ddmendpoints.agis.ALL.json
[2026-04-13 00:19:10] -rw------- 1 boinc boinc       427 Apr 12 22:48 workernode_map.json
[2026-04-13 00:19:10] drwx------ 5 boinc boinc      4096 Apr 12 22:48 pilot3
[2026-04-13 00:19:10] -rw------- 1 boinc boinc 199531379 Apr 13 00:18 HITS.49263191._053465.pool.root.1
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc       487 Apr 13 00:18 boinc_task_state.xml
[2026-04-13 00:19:10] -rw------- 1 boinc boinc      1020 Apr 13 00:18 memory_monitor_summary.json
[2026-04-13 00:19:10] -rw------- 1 boinc boinc    225762 Apr 13 00:18 log.49263191._053465.job.log.tgz.1
[2026-04-13 00:19:10] -rw------- 1 boinc boinc      6330 Apr 13 00:18 heartbeat_new.json
[2026-04-13 00:19:10] -rw------- 1 boinc boinc      6221 Apr 13 00:18 heartbeat.json
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc        27 Apr 13 00:18 wrapper_checkpoint.txt
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc      8192 Apr 13 00:18 boinc_mmap_file
[2026-04-13 00:19:10] -rw------- 1 boinc boinc       817 Apr 13 00:19 pilotlog.txt
[2026-04-13 00:19:10] -rw------- 1 boinc boinc        95 Apr 13 00:19 pilot_heartbeat.json
[2026-04-13 00:19:10] -rw------- 1 boinc boinc    523463 Apr 13 00:19 log.49263191._053465.job.log.1
[2026-04-13 00:19:10] -rw------- 1 boinc boinc       357 Apr 13 00:19 output.list
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc       410 Apr 13 00:19 runtime_log
[2026-04-13 00:19:10] -rw------- 1 boinc boinc    768000 Apr 13 00:19 result.tar.gz
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc      8518 Apr 13 00:19 runtime_log.err
[2026-04-13 00:19:10] -rw------- 1 boinc boinc       657 Apr 13 00:19 1af73fd410c0.diag
[2026-04-13 00:19:10] -rw-r--r-- 1 boinc boinc     11596 Apr 13 00:19 stderr.txt
[2026-04-13 00:19:10] HITS file was successfully produced:
[2026-04-13 00:19:10] -rw------- 1 boinc boinc 199531379 Apr 13 00:18 shared/HITS.pool.root.1
[2026-04-13 00:19:10]  *** Contents of shared directory: ***
[2026-04-13 00:19:10] total 416608
[2026-04-13 00:19:10] -rw-r--r-- 2 boinc boinc 225618937 Apr 12 22:48 ATLAS.root_0
[2026-04-13 00:19:10] -rw-r--r-- 2 boinc boinc    656929 Apr 12 22:48 input.tar.gz
[2026-04-13 00:19:10] -rw-r--r-- 2 boinc boinc     15665 Apr 12 22:48 start_atlas.sh
[2026-04-13 00:19:10] -rw------- 1 boinc boinc 199531379 Apr 13 00:18 HITS.pool.root.1
[2026-04-13 00:19:10] -rw------- 1 boinc boinc    768000 Apr 13 00:19 result.tar.gz
00:19:12 (1142703): run_atlas exited; CPU time 15205.167778
00:19:12 (1142703): called boinc_finish(0)

</stderr_txt>
]]>

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