Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:35:54 (3793501): wrapper (7.7.26015): starting
17:35:54 (3793501): wrapper: running run_atlas (--nthreads 4)
[2026-04-12 17:35:54] Arguments: --nthreads 4
[2026-04-12 17:35:54] Threads: 4
[2026-04-12 17:35:54] Checking for CVMFS
[2026-04-12 17:35:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 17:35:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 17:35:55] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 17:35:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 17:35:55] 2.9.2.0 3030651 4008 99252 158384 1 50 18872782 36864000 0 130560 0 2798292 99.989 163672 12632 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 17:35:55] CVMFS is ok
[2026-04-12 17:35:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 17:35:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 17:35:55] Further information can be found at the LHC@home message board.
[2026-04-12 17:35:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 17:35:55] Checking for apptainer binary...
[2026-04-12 17:35:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 17:35:55] Running /usr/bin/apptainer --version
[2026-04-12 17:35:55] apptainer version 1.4.1-1.1
[2026-04-12 17:35:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 17:35:55] thA317
[2026-04-12 17:35:55] apptainer works
[2026-04-12 17:35:55] Set ATHENA_PROC_NUMBER=4
[2026-04-12 17:35:55] Set ATHENA_CORE_NUMBER=4
[2026-04-12 17:35:55] Starting ATLAS job with PandaID=7087692549
[2026-04-12 17:35:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 18:54:19]  *** The last 200 lines of the pilot log: ***
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | job 7087692549 has completed (purged errors)
[2026-04-12 18:54:19] 2026-04-12 16:53:30,470 | INFO     | overall cleanup function is called
[2026-04-12 18:54:19] 2026-04-12 16:53:31,477 | INFO     | --- collectZombieJob: --- 10, [3802149]
[2026-04-12 18:54:19] 2026-04-12 16:53:31,477 | INFO     | zombie collector waiting for pid 3802149
[2026-04-12 18:54:19] 2026-04-12 16:53:31,477 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 18:54:19] 2026-04-12 16:53:31,477 | INFO     | collected zombie processes
[2026-04-12 18:54:19] 2026-04-12 16:53:31,477 | INFO     | will attempt to kill all subprocesses of pid=3802149
[2026-04-12 18:54:19] 2026-04-12 16:53:31,524 | INFO     | process IDs to be killed: [3802149] (in reverse order)
[2026-04-12 18:54:19] 2026-04-12 16:53:31,561 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 18:54:19] 2026-04-12 16:53:31,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 18:54:19] 2026-04-12 16:53:31,563 | INFO     | did not find any defunct processes belonging to 3802149
[2026-04-12 18:54:19] 2026-04-12 16:53:31,564 | INFO     | did not find any defunct processes belonging to 3802149
[2026-04-12 18:54:19] 2026-04-12 16:53:31,564 | INFO     | Ready for new job
[2026-04-12 18:54:19] 2026-04-12 16:53:31,565 | INFO     | **************************************
[2026-04-12 18:54:19] 2026-04-12 16:53:31,565 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 18:54:19] 2026-04-12 16:53:31,565 | INFO     | **************************************
[2026-04-12 18:54:19] 2026-04-12 16:53:31,565 | INFO     | 
[2026-04-12 18:54:19] 2026-04-12 16:53:31,565 | INFO     | architecture information:
[2026-04-12 18:54:19] 2026-04-12 16:53:31,566 | INFO     | executing command: cat /etc/os-release
[2026-04-12 18:54:19] 2026-04-12 16:53:31,581 | INFO     | cat /etc/os-release:
[2026-04-12 18:54:19] NAME="CentOS Linux"
[2026-04-12 18:54:19] VERSION="7 (Core)"
[2026-04-12 18:54:19] ID="centos"
[2026-04-12 18:54:19] ID_LIKE="rhel fedora"
[2026-04-12 18:54:19] VERSION_ID="7"
[2026-04-12 18:54:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 18:54:19] ANSI_COLOR="0;31"
[2026-04-12 18:54:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 18:54:19] HOME_URL="https://www.centos.org/"
[2026-04-12 18:54:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 18:54:19] 
[2026-04-12 18:54:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 18:54:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 18:54:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 18:54:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 18:54:19] 
[2026-04-12 18:54:19] 2026-04-12 16:53:31,581 | INFO     | **************************************
[2026-04-12 18:54:19] 2026-04-12 16:53:31,626 | WARNING  | process 3802149 can no longer be monitored (due to stat problems) - aborting
[2026-04-12 18:54:19] 2026-04-12 16:53:31,660 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 18:54:19] 2026-04-12 16:53:31,703 | INFO     | number of running child processes to parent process 3802149: 1
[2026-04-12 18:54:19] 2026-04-12 16:53:31,703 | INFO     | maximum number of monitored processes: 6
[2026-04-12 18:54:19] 2026-04-12 16:53:31,703 | INFO     | aborting job monitoring since job object (job id=7087692549) has expired
[2026-04-12 18:54:19] 2026-04-12 16:53:32,084 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 18:54:19] 2026-04-12 16:53:32,101 | INFO     | sufficient remaining disk space (240584228864 B)
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | INFO     | update_server=False
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 18:54:19] 2026-04-12 16:53:32,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 18:54:19] 2026-04-12 16:53:32,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 18:54:19] 2026-04-12 16:53:32,103 | INFO     | will abort loop
[2026-04-12 18:54:19] 2026-04-12 16:53:32,198 | INFO     | all data control threads have been joined
[2026-04-12 18:54:19] 2026-04-12 16:53:32,612 | INFO     | all payload control threads have been joined
[2026-04-12 18:54:19] 2026-04-12 16:53:32,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 18:54:19] 2026-04-12 16:53:33,108 | INFO     | [job] retrieve thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:33,108 | INFO     | [job] queue monitor thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:33,108 | INFO     | [job] job monitor thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:33,115 | INFO     | [data] copytool_in thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:33,175 | INFO     | all job control threads have been joined
[2026-04-12 18:54:19] 2026-04-12 16:53:33,204 | INFO     | [data] control thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:33,221 | INFO     | [payload] failed_post thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:33,307 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:33,618 | INFO     | [payload] control thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:33,707 | INFO     | [payload] validate_post thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:34,176 | INFO     | [job] control thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:34,249 | INFO     | [job] validate thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:34,354 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:34,356 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:34,512 | INFO     | job.realtimelogging is not enabled
[2026-04-12 18:54:19] 2026-04-12 16:53:34,897 | INFO     | [data] copytool_out thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:35,517 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:53:36,104 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 18:54:19] 2026-04-12 16:54:14,483 | INFO     | [monitor] cgroup control has ended
[2026-04-12 18:54:19] 2026-04-12 16:54:14,743 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274070292288)>', '<ExcThread(monitor, started 140273187268352)>']
[2026-04-12 18:54:19] 2026-04-12 16:54:15,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 18:54:19] 2026-04-12 16:54:15,325 | INFO     | [monitor] control thread has ended
[2026-04-12 18:54:19] 2026-04-12 16:54:19,769 | INFO     | all workflow threads have been joined
[2026-04-12 18:54:19] 2026-04-12 16:54:19,770 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 18:54:19] 2026-04-12 16:54:19,770 | INFO     | traces error code: 0
[2026-04-12 18:54:19] 2026-04-12 16:54:19,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 18:54:19] 2026-04-12 16:54:19,850 [wrapper] ==== pilot stdout END ====
[2026-04-12 18:54:19] 2026-04-12 16:54:19,854 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 18:54:19] 2026-04-12 16:54:19,858 [wrapper] pilotpid: 3797618
[2026-04-12 18:54:19] 2026-04-12 16:54:19,862 [wrapper] Pilot exit status: 0
[2026-04-12 18:54:19] 2026-04-12 16:54:19,874 [wrapper] pandaids: 7087692549
[2026-04-12 18:54:19] 2026-04-12 16:54:19,898 [wrapper] cleanup supervisor_pilot 3807724 3797619
[2026-04-12 18:54:19] 2026-04-12 16:54:19,901 [wrapper] Test setup, not cleaning
[2026-04-12 18:54:19] 2026-04-12 16:54:19,905 [wrapper] apfmon messages muted
[2026-04-12 18:54:19] 2026-04-12 16:54:19,909 [wrapper] ==== wrapper stdout END ====
[2026-04-12 18:54:19] 2026-04-12 16:54:19,913 [wrapper] ==== wrapper stderr END ====
[2026-04-12 18:54:19]  *** Error codes and diagnostics ***
[2026-04-12 18:54:19]     "exeErrorCode": 0,
[2026-04-12 18:54:19]     "pilotErrorCode": 0,
[2026-04-12 18:54:19]  *** Listing of results directory ***
[2026-04-12 18:54:19] total 417916
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc    644190 Apr 12 04:09 pilot3.tar.gz
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc      5094 Apr 12 04:11 queuedata.json
[2026-04-12 18:54:19] -rwx------ 1 boinc boinc     36322 Apr 12 04:11 runpilot2-wrapper.sh
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc       100 Apr 12 17:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 18:54:19] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 17:35 run_atlas
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc       105 Apr 12 17:35 job.xml
[2026-04-12 18:54:19] -rw-r--r-- 2 boinc boinc 224223915 Apr 12 17:35 EVNT.49263198._001209.pool.root.1
[2026-04-12 18:54:19] -rw-r--r-- 2 boinc boinc    656931 Apr 12 17:35 input.tar.gz
[2026-04-12 18:54:19] -rw-r--r-- 2 boinc boinc     15665 Apr 12 17:35 start_atlas.sh
[2026-04-12 18:54:19] drwxrwx--x 2 boinc boinc      4096 Apr 12 17:35 shared
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc         0 Apr 12 17:35 boinc_setup_complete
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc      6292 Apr 12 17:35 init_data.xml
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc         0 Apr 12 17:35 boinc_lockfile
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc      2576 Apr 12 17:35 pandaJob.out
[2026-04-12 18:54:19] -rw------- 1 boinc boinc    997759 Apr 12 17:36 agis_schedconf.cvmfs.json
[2026-04-12 18:54:19] -rw------- 1 boinc boinc   1511579 Apr 12 17:36 agis_ddmendpoints.agis.ALL.json
[2026-04-12 18:54:19] -rw------- 1 boinc boinc       427 Apr 12 17:36 workernode_map.json
[2026-04-12 18:54:19] drwx------ 5 boinc boinc      4096 Apr 12 17:36 pilot3
[2026-04-12 18:54:19] -rw------- 1 boinc boinc 198291598 Apr 12 18:53 HITS.49263200._048103.pool.root.1
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc       487 Apr 12 18:53 boinc_task_state.xml
[2026-04-12 18:54:19] -rw------- 1 boinc boinc      1021 Apr 12 18:53 memory_monitor_summary.json
[2026-04-12 18:54:19] -rw------- 1 boinc boinc    230488 Apr 12 18:53 log.49263200._048103.job.log.tgz.1
[2026-04-12 18:54:19] -rw------- 1 boinc boinc      6335 Apr 12 18:53 heartbeat_new.json
[2026-04-12 18:54:19] -rw------- 1 boinc boinc      6226 Apr 12 18:53 heartbeat.json
[2026-04-12 18:54:19] -rw------- 1 boinc boinc        95 Apr 12 18:53 pilot_heartbeat.json
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc      8192 Apr 12 18:53 boinc_mmap_file
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc        27 Apr 12 18:53 wrapper_checkpoint.txt
[2026-04-12 18:54:19] -rw------- 1 boinc boinc      5147 Apr 12 18:54 pilotlog.txt
[2026-04-12 18:54:19] -rw------- 1 boinc boinc    457361 Apr 12 18:54 log.49263200._048103.job.log.1
[2026-04-12 18:54:19] -rw------- 1 boinc boinc       357 Apr 12 18:54 output.list
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc       410 Apr 12 18:54 runtime_log
[2026-04-12 18:54:19] -rw------- 1 boinc boinc    706560 Apr 12 18:54 result.tar.gz
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc      8518 Apr 12 18:54 runtime_log.err
[2026-04-12 18:54:19] -rw------- 1 boinc boinc       657 Apr 12 18:54 ff649b96605c.diag
[2026-04-12 18:54:19] -rw-r--r-- 1 boinc boinc     12259 Apr 12 18:54 stderr.txt
[2026-04-12 18:54:19] HITS file was successfully produced:
[2026-04-12 18:54:19] -rw------- 1 boinc boinc 198291598 Apr 12 18:53 shared/HITS.pool.root.1
[2026-04-12 18:54:19]  *** Contents of shared directory: ***
[2026-04-12 18:54:19] total 413980
[2026-04-12 18:54:19] -rw-r--r-- 2 boinc boinc 224223915 Apr 12 17:35 ATLAS.root_0
[2026-04-12 18:54:19] -rw-r--r-- 2 boinc boinc    656931 Apr 12 17:35 input.tar.gz
[2026-04-12 18:54:19] -rw-r--r-- 2 boinc boinc     15665 Apr 12 17:35 start_atlas.sh
[2026-04-12 18:54:19] -rw------- 1 boinc boinc 198291598 Apr 12 18:53 HITS.pool.root.1
[2026-04-12 18:54:19] -rw------- 1 boinc boinc    706560 Apr 12 18:54 result.tar.gz
18:54:21 (3793501): run_atlas exited; CPU time 17076.867033
18:54:21 (3793501): called boinc_finish(0)

</stderr_txt>
]]>

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