Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:59:55 (3764204): wrapper (7.7.26015): starting
14:59:55 (3764204): wrapper: running run_atlas (--nthreads 4)
[2026-04-12 14:59:55] Arguments: --nthreads 4
[2026-04-12 14:59:55] Threads: 4
[2026-04-12 14:59:55] Checking for CVMFS
[2026-04-12 14:59:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 14:59:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 14:59:56] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 14:59:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 14:59:56] 2.9.2.0 3030651 3852 99448 158379 0 50 18850419 36864001 0 130560 0 2688575 99.989 155838 12562 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 14:59:56] CVMFS is ok
[2026-04-12 14:59:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 14:59:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 14:59:56] Further information can be found at the LHC@home message board.
[2026-04-12 14:59:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 14:59:56] Checking for apptainer binary...
[2026-04-12 14:59:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 14:59:56] Running /usr/bin/apptainer --version
[2026-04-12 14:59:56] apptainer version 1.4.1-1.1
[2026-04-12 14:59:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 14:59:56] thA317
[2026-04-12 14:59:56] apptainer works
[2026-04-12 14:59:56] Set ATHENA_PROC_NUMBER=4
[2026-04-12 14:59:56] Set ATHENA_CORE_NUMBER=4
[2026-04-12 14:59:56] Starting ATLAS job with PandaID=7087257650
[2026-04-12 14:59:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 16:18:21]  *** The last 200 lines of the pilot log: ***
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 16:18:21] 2026-04-12 14:17:31,809 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,810 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 16:18:21] 2026-04-12 14:17:31,810 | INFO     | job 7087257650 has completed (purged errors)
[2026-04-12 16:18:21] 2026-04-12 14:17:31,810 | INFO     | overall cleanup function is called
[2026-04-12 16:18:21] 2026-04-12 14:17:32,731 | WARNING  | process 3772848 can no longer be monitored (due to stat problems) - aborting
[2026-04-12 16:18:21] 2026-04-12 14:17:32,768 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 16:18:21] 2026-04-12 14:17:32,814 | INFO     | number of running child processes to parent process 3772848: 1
[2026-04-12 16:18:21] 2026-04-12 14:17:32,814 | INFO     | maximum number of monitored processes: 6
[2026-04-12 16:18:21] 2026-04-12 14:17:32,814 | INFO     | aborting job monitoring since job object (job id=7087257650) has expired
[2026-04-12 16:18:21] 2026-04-12 14:17:32,816 | INFO     | --- collectZombieJob: --- 10, [3772848]
[2026-04-12 16:18:21] 2026-04-12 14:17:32,816 | INFO     | zombie collector waiting for pid 3772848
[2026-04-12 16:18:21] 2026-04-12 14:17:32,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 16:18:21] 2026-04-12 14:17:32,816 | INFO     | collected zombie processes
[2026-04-12 16:18:21] 2026-04-12 14:17:32,816 | INFO     | will attempt to kill all subprocesses of pid=3772848
[2026-04-12 16:18:21] 2026-04-12 14:17:32,862 | INFO     | process IDs to be killed: [3772848] (in reverse order)
[2026-04-12 16:18:21] 2026-04-12 14:17:32,899 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 16:18:21] 2026-04-12 14:17:32,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 16:18:21] 2026-04-12 14:17:32,901 | INFO     | did not find any defunct processes belonging to 3772848
[2026-04-12 16:18:21] 2026-04-12 14:17:32,903 | INFO     | did not find any defunct processes belonging to 3772848
[2026-04-12 16:18:21] 2026-04-12 14:17:32,903 | INFO     | Ready for new job
[2026-04-12 16:18:21] 2026-04-12 14:17:32,903 | INFO     | **************************************
[2026-04-12 16:18:21] 2026-04-12 14:17:32,904 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 16:18:21] 2026-04-12 14:17:32,904 | INFO     | **************************************
[2026-04-12 16:18:21] 2026-04-12 14:17:32,904 | INFO     | 
[2026-04-12 16:18:21] 2026-04-12 14:17:32,904 | INFO     | architecture information:
[2026-04-12 16:18:21] 2026-04-12 14:17:32,904 | INFO     | executing command: cat /etc/os-release
[2026-04-12 16:18:21] 2026-04-12 14:17:32,920 | INFO     | cat /etc/os-release:
[2026-04-12 16:18:21] NAME="CentOS Linux"
[2026-04-12 16:18:21] VERSION="7 (Core)"
[2026-04-12 16:18:21] ID="centos"
[2026-04-12 16:18:21] ID_LIKE="rhel fedora"
[2026-04-12 16:18:21] VERSION_ID="7"
[2026-04-12 16:18:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 16:18:21] ANSI_COLOR="0;31"
[2026-04-12 16:18:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 16:18:21] HOME_URL="https://www.centos.org/"
[2026-04-12 16:18:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 16:18:21] 
[2026-04-12 16:18:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 16:18:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 16:18:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 16:18:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 16:18:21] 
[2026-04-12 16:18:21] 2026-04-12 14:17:32,920 | INFO     | **************************************
[2026-04-12 16:18:21] 2026-04-12 14:17:33,423 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 16:18:21] 2026-04-12 14:17:33,443 | INFO     | sufficient remaining disk space (240650289152 B)
[2026-04-12 16:18:21] 2026-04-12 14:17:33,443 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 16:18:21] 2026-04-12 14:17:33,443 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 16:18:21] 2026-04-12 14:17:33,443 | INFO     | update_server=False
[2026-04-12 16:18:21] 2026-04-12 14:17:33,443 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 16:18:21] 2026-04-12 14:17:33,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 16:18:21] 2026-04-12 14:17:33,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 16:18:21] 2026-04-12 14:17:33,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 16:18:21] 2026-04-12 14:17:33,444 | INFO     | will abort loop
[2026-04-12 16:18:21] 2026-04-12 14:17:33,553 | INFO     | all data control threads have been joined
[2026-04-12 16:18:21] 2026-04-12 14:17:33,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 16:18:21] 2026-04-12 14:17:34,133 | INFO     | all payload control threads have been joined
[2026-04-12 16:18:21] 2026-04-12 14:17:34,448 | INFO     | [job] retrieve thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:34,449 | INFO     | [job] queue monitor thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:34,449 | INFO     | [job] job monitor thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:34,473 | INFO     | [data] copytool_in thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:34,559 | INFO     | [data] control thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:34,589 | INFO     | [payload] failed_post thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:34,602 | INFO     | all job control threads have been joined
[2026-04-12 16:18:21] 2026-04-12 14:17:34,866 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:35,138 | INFO     | [payload] control thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:35,214 | INFO     | [payload] validate_post thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:35,608 | INFO     | [job] control thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:35,626 | INFO     | [job] validate thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:35,717 | INFO     | [data] copytool_out thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:35,717 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:35,742 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:35,814 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:17:37,450 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 16:18:21] 2026-04-12 14:18:04,541 | INFO     | PID=3768342 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 16:18:21] 2026-04-12 14:18:04,541 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 16:18:21] 2026-04-12 14:18:04,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 16:18:21] 2026-04-12 14:18:04,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 16:18:21] 2026-04-12 14:18:16,287 | INFO     | [monitor] cgroup control has ended
[2026-04-12 16:18:21] 2026-04-12 14:18:16,447 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140329459754816)>', '<ExcThread(monitor, started 140328946341632)>']
[2026-04-12 16:18:21] 2026-04-12 14:18:16,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 16:18:21] 2026-04-12 14:18:16,604 | INFO     | [monitor] control thread has ended
[2026-04-12 16:18:21] 2026-04-12 14:18:21,472 | INFO     | all workflow threads have been joined
[2026-04-12 16:18:21] 2026-04-12 14:18:21,473 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 16:18:21] 2026-04-12 14:18:21,473 | INFO     | traces error code: 0
[2026-04-12 16:18:21] 2026-04-12 14:18:21,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 16:18:21] 2026-04-12 14:18:21,554 [wrapper] ==== pilot stdout END ====
[2026-04-12 16:18:21] 2026-04-12 14:18:21,559 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 16:18:21] 2026-04-12 14:18:21,563 [wrapper] pilotpid: 3768342
[2026-04-12 16:18:21] 2026-04-12 14:18:21,567 [wrapper] Pilot exit status: 0
[2026-04-12 16:18:21] 2026-04-12 14:18:21,578 [wrapper] pandaids: 7087257650
[2026-04-12 16:18:21] 2026-04-12 14:18:21,603 [wrapper] cleanup supervisor_pilot 3778674 3768343
[2026-04-12 16:18:21] 2026-04-12 14:18:21,607 [wrapper] Test setup, not cleaning
[2026-04-12 16:18:21] 2026-04-12 14:18:21,611 [wrapper] apfmon messages muted
[2026-04-12 16:18:21] 2026-04-12 14:18:21,615 [wrapper] ==== wrapper stdout END ====
[2026-04-12 16:18:21] 2026-04-12 14:18:21,619 [wrapper] ==== wrapper stderr END ====
[2026-04-12 16:18:21]  *** Error codes and diagnostics ***
[2026-04-12 16:18:21]     "exeErrorCode": 0,
[2026-04-12 16:18:21]     "pilotErrorCode": 0,
[2026-04-12 16:18:21]  *** Listing of results directory ***
[2026-04-12 16:18:21] total 409132
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc    644190 Apr 11 23:53 pilot3.tar.gz
[2026-04-12 16:18:21] -rwx------ 1 boinc boinc     36322 Apr 11 23:55 runpilot2-wrapper.sh
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc      5094 Apr 12 00:00 queuedata.json
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc       100 Apr 12 14:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 16:18:21] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 14:59 run_atlas
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc       105 Apr 12 14:59 job.xml
[2026-04-12 16:18:21] -rw-r--r-- 2 boinc boinc 221372334 Apr 12 14:59 EVNT.49263198._001149.pool.root.1
[2026-04-12 16:18:21] -rw-r--r-- 2 boinc boinc    656931 Apr 12 14:59 input.tar.gz
[2026-04-12 16:18:21] -rw-r--r-- 2 boinc boinc     15665 Apr 12 14:59 start_atlas.sh
[2026-04-12 16:18:21] drwxrwx--x 2 boinc boinc      4096 Apr 12 14:59 shared
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc         0 Apr 12 14:59 boinc_setup_complete
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc      6292 Apr 12 14:59 init_data.xml
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc         0 Apr 12 14:59 boinc_lockfile
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc      2576 Apr 12 14:59 pandaJob.out
[2026-04-12 16:18:21] -rw------- 1 boinc boinc    997759 Apr 12 15:00 agis_schedconf.cvmfs.json
[2026-04-12 16:18:21] -rw------- 1 boinc boinc   1511579 Apr 12 15:00 agis_ddmendpoints.agis.ALL.json
[2026-04-12 16:18:21] -rw------- 1 boinc boinc       427 Apr 12 15:00 workernode_map.json
[2026-04-12 16:18:21] drwx------ 5 boinc boinc      4096 Apr 12 15:00 pilot3
[2026-04-12 16:18:21] -rw------- 1 boinc boinc 192147480 Apr 12 16:17 HITS.49263200._046401.pool.root.1
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc       487 Apr 12 16:17 boinc_task_state.xml
[2026-04-12 16:18:21] -rw------- 1 boinc boinc      1020 Apr 12 16:17 memory_monitor_summary.json
[2026-04-12 16:18:21] -rw------- 1 boinc boinc    233462 Apr 12 16:17 log.49263200._046401.job.log.tgz.1
[2026-04-12 16:18:21] -rw------- 1 boinc boinc      6329 Apr 12 16:17 heartbeat_new.json
[2026-04-12 16:18:21] -rw------- 1 boinc boinc      6220 Apr 12 16:17 heartbeat.json
[2026-04-12 16:18:21] -rw------- 1 boinc boinc        95 Apr 12 16:17 pilot_heartbeat.json
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc      8192 Apr 12 16:17 boinc_mmap_file
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc        27 Apr 12 16:17 wrapper_checkpoint.txt
[2026-04-12 16:18:21] -rw------- 1 boinc boinc      4749 Apr 12 16:18 pilotlog.txt
[2026-04-12 16:18:21] -rw------- 1 boinc boinc    457492 Apr 12 16:18 log.49263200._046401.job.log.1
[2026-04-12 16:18:21] -rw------- 1 boinc boinc       357 Apr 12 16:18 output.list
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc       410 Apr 12 16:18 runtime_log
[2026-04-12 16:18:21] -rw------- 1 boinc boinc    706560 Apr 12 16:18 result.tar.gz
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc      8518 Apr 12 16:18 runtime_log.err
[2026-04-12 16:18:21] -rw------- 1 boinc boinc       657 Apr 12 16:18 c36b2ff160ed.diag
[2026-04-12 16:18:21] -rw-r--r-- 1 boinc boinc     12449 Apr 12 16:18 stderr.txt
[2026-04-12 16:18:21] HITS file was successfully produced:
[2026-04-12 16:18:21] -rw------- 1 boinc boinc 192147480 Apr 12 16:17 shared/HITS.pool.root.1
[2026-04-12 16:18:21]  *** Contents of shared directory: ***
[2026-04-12 16:18:21] total 405192
[2026-04-12 16:18:21] -rw-r--r-- 2 boinc boinc 221372334 Apr 12 14:59 ATLAS.root_0
[2026-04-12 16:18:21] -rw-r--r-- 2 boinc boinc    656931 Apr 12 14:59 input.tar.gz
[2026-04-12 16:18:21] -rw-r--r-- 2 boinc boinc     15665 Apr 12 14:59 start_atlas.sh
[2026-04-12 16:18:21] -rw------- 1 boinc boinc 192147480 Apr 12 16:17 HITS.pool.root.1
[2026-04-12 16:18:21] -rw------- 1 boinc boinc    706560 Apr 12 16:18 result.tar.gz
16:18:22 (3764204): run_atlas exited; CPU time 17175.183336
16:18:22 (3764204): called boinc_finish(0)

</stderr_txt>
]]>

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