Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:18:25 (3778963): wrapper (7.7.26015): starting
16:18:25 (3778963): wrapper: running run_atlas (--nthreads 4)
[2026-04-12 16:18:25] Arguments: --nthreads 4
[2026-04-12 16:18:25] Threads: 4
[2026-04-12 16:18:25] Checking for CVMFS
[2026-04-12 16:18:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 16:18:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 16:18:26] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 16:18:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 16:18:26] 2.9.2.0 3030651 3930 98988 158382 2 49 18861422 36864000 0 130560 0 2743452 99.989 159864 12478 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 16:18:26] CVMFS is ok
[2026-04-12 16:18:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 16:18:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 16:18:26] Further information can be found at the LHC@home message board.
[2026-04-12 16:18:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 16:18:26] Checking for apptainer binary...
[2026-04-12 16:18:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 16:18:26] Running /usr/bin/apptainer --version
[2026-04-12 16:18:26] apptainer version 1.4.1-1.1
[2026-04-12 16:18:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 16:18:26] thA317
[2026-04-12 16:18:26] apptainer works
[2026-04-12 16:18:26] Set ATHENA_PROC_NUMBER=4
[2026-04-12 16:18:26] Set ATHENA_CORE_NUMBER=4
[2026-04-12 16:18:26] Starting ATLAS job with PandaID=7087602499
[2026-04-12 16:18:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 17:35:50]  *** The last 200 lines of the pilot log: ***
[2026-04-12 17:35:50] 2026-04-12 15:34:49,043 | INFO     | collected zombie processes
[2026-04-12 17:35:50] 2026-04-12 15:34:49,043 | INFO     | will attempt to kill all subprocesses of pid=3787602
[2026-04-12 17:35:50] 2026-04-12 15:34:49,090 | INFO     | process IDs to be killed: [3787602] (in reverse order)
[2026-04-12 17:35:50] 2026-04-12 15:34:49,126 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 17:35:50] 2026-04-12 15:34:49,126 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 17:35:50] 2026-04-12 15:34:49,128 | INFO     | did not find any defunct processes belonging to 3787602
[2026-04-12 17:35:50] 2026-04-12 15:34:49,129 | INFO     | did not find any defunct processes belonging to 3787602
[2026-04-12 17:35:50] 2026-04-12 15:34:49,129 | INFO     | Ready for new job
[2026-04-12 17:35:50] 2026-04-12 15:34:49,130 | INFO     | **************************************
[2026-04-12 17:35:50] 2026-04-12 15:34:49,130 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 17:35:50] 2026-04-12 15:34:49,130 | INFO     | **************************************
[2026-04-12 17:35:50] 2026-04-12 15:34:49,130 | INFO     | 
[2026-04-12 17:35:50] 2026-04-12 15:34:49,131 | INFO     | architecture information:
[2026-04-12 17:35:50] 2026-04-12 15:34:49,131 | INFO     | executing command: cat /etc/os-release
[2026-04-12 17:35:50] 2026-04-12 15:34:49,145 | INFO     | cat /etc/os-release:
[2026-04-12 17:35:50] NAME="CentOS Linux"
[2026-04-12 17:35:50] VERSION="7 (Core)"
[2026-04-12 17:35:50] ID="centos"
[2026-04-12 17:35:50] ID_LIKE="rhel fedora"
[2026-04-12 17:35:50] VERSION_ID="7"
[2026-04-12 17:35:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 17:35:50] ANSI_COLOR="0;31"
[2026-04-12 17:35:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 17:35:50] HOME_URL="https://www.centos.org/"
[2026-04-12 17:35:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 17:35:50] 
[2026-04-12 17:35:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 17:35:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 17:35:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 17:35:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 17:35:50] 
[2026-04-12 17:35:50] 2026-04-12 15:34:49,146 | INFO     | **************************************
[2026-04-12 17:35:50] 2026-04-12 15:34:49,649 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 17:35:50] 2026-04-12 15:34:49,667 | INFO     | sufficient remaining disk space (240633511936 B)
[2026-04-12 17:35:50] 2026-04-12 15:34:49,668 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 17:35:50] 2026-04-12 15:34:49,668 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 17:35:50] 2026-04-12 15:34:49,668 | INFO     | update_server=False
[2026-04-12 17:35:50] 2026-04-12 15:34:49,668 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 17:35:50] 2026-04-12 15:34:49,668 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 17:35:50] 2026-04-12 15:34:49,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 17:35:50] 2026-04-12 15:34:50,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 17:35:50] 2026-04-12 15:34:50,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 17:35:50] 2026-04-12 15:34:50,143 | INFO     | aborting loop
[2026-04-12 17:35:50] 2026-04-12 15:34:50,318 | INFO     | all payload control threads have been joined
[2026-04-12 17:35:50] 2026-04-12 15:34:50,522 | INFO     | all data control threads have been joined
[2026-04-12 17:35:50] 2026-04-12 15:34:50,673 | INFO     | [job] retrieve thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:50,674 | INFO     | [job] queue monitor thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:50,718 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:50,802 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:50,848 | INFO     | [payload] validate_post thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:50,993 | INFO     | [data] copytool_in thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:51,006 | INFO     | [payload] failed_post thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:51,149 | INFO     | [job] job monitor thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:51,324 | INFO     | [payload] control thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:51,352 | INFO     | all job control threads have been joined
[2026-04-12 17:35:50] 2026-04-12 15:34:51,528 | INFO     | [data] control thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:51,961 | INFO     | [job] validate thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:52,038 | INFO     | [data] copytool_out thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:52,116 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:52,357 | INFO     | [job] control thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:34:53,675 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:35:00,112 | INFO     | job.realtimelogging is not enabled
[2026-04-12 17:35:50] 2026-04-12 15:35:01,117 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 17:35:50] 2026-04-12 15:35:20,764 | INFO     | PID=3783086 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 17:35:50] 2026-04-12 15:35:20,765 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 17:35:50] 2026-04-12 15:35:20,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 17:35:50] 2026-04-12 15:35:20,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 17:35:50] 2026-04-12 15:35:44,596 | INFO     | [monitor] cgroup control has ended
[2026-04-12 17:35:50] 2026-04-12 15:35:45,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949598582592)>', '<ExcThread(monitor, started 139948212610816)>']
[2026-04-12 17:35:50] 2026-04-12 15:35:45,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 17:35:50] 2026-04-12 15:35:45,893 | INFO     | [monitor] control thread has ended
[2026-04-12 17:35:50] 2026-04-12 15:35:50,320 | INFO     | all workflow threads have been joined
[2026-04-12 17:35:50] 2026-04-12 15:35:50,320 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 17:35:50] 2026-04-12 15:35:50,320 | INFO     | traces error code: 0
[2026-04-12 17:35:50] 2026-04-12 15:35:50,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 17:35:50] 2026-04-12 15:35:50,400 [wrapper] ==== pilot stdout END ====
[2026-04-12 17:35:50] 2026-04-12 15:35:50,404 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 17:35:50] 2026-04-12 15:35:50,408 [wrapper] pilotpid: 3783086
[2026-04-12 17:35:50] 2026-04-12 15:35:50,412 [wrapper] Pilot exit status: 0
[2026-04-12 17:35:50] 2026-04-12 15:35:50,424 [wrapper] pandaids: 7087602499
[2026-04-12 17:35:50] 2026-04-12 15:35:50,449 [wrapper] cleanup supervisor_pilot 3793274 3783087
[2026-04-12 17:35:50] 2026-04-12 15:35:50,453 [wrapper] Test setup, not cleaning
[2026-04-12 17:35:50] 2026-04-12 15:35:50,457 [wrapper] apfmon messages muted
[2026-04-12 17:35:50] 2026-04-12 15:35:50,461 [wrapper] ==== wrapper stdout END ====
[2026-04-12 17:35:50] 2026-04-12 15:35:50,465 [wrapper] ==== wrapper stderr END ====
[2026-04-12 17:35:50]  *** Error codes and diagnostics ***
[2026-04-12 17:35:50]     "exeErrorCode": 0,
[2026-04-12 17:35:50]     "pilotErrorCode": 0,
[2026-04-12 17:35:50]  *** Listing of results directory ***
[2026-04-12 17:35:50] total 413212
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc    644190 Apr 12 02:24 pilot3.tar.gz
[2026-04-12 17:35:50] -rwx------ 1 boinc boinc     36322 Apr 12 02:31 runpilot2-wrapper.sh
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc      5094 Apr 12 02:35 queuedata.json
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc       100 Apr 12 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 17:35:50] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 16:18 run_atlas
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc       105 Apr 12 16:18 job.xml
[2026-04-12 17:35:50] -rw-r--r-- 2 boinc boinc 222060871 Apr 12 16:18 EVNT.49263189._000195.pool.root.1
[2026-04-12 17:35:50] -rw-r--r-- 2 boinc boinc    656931 Apr 12 16:18 input.tar.gz
[2026-04-12 17:35:50] -rw-r--r-- 2 boinc boinc     15665 Apr 12 16:18 start_atlas.sh
[2026-04-12 17:35:50] drwxrwx--x 2 boinc boinc      4096 Apr 12 16:18 shared
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc         0 Apr 12 16:18 boinc_setup_complete
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc      6292 Apr 12 16:18 init_data.xml
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc         0 Apr 12 16:18 boinc_lockfile
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc      2575 Apr 12 16:18 pandaJob.out
[2026-04-12 17:35:50] -rw------- 1 boinc boinc    997759 Apr 12 16:18 agis_schedconf.cvmfs.json
[2026-04-12 17:35:50] -rw------- 1 boinc boinc   1511579 Apr 12 16:18 agis_ddmendpoints.agis.ALL.json
[2026-04-12 17:35:50] -rw------- 1 boinc boinc       421 Apr 12 16:18 workernode_map.json
[2026-04-12 17:35:50] drwx------ 5 boinc boinc      4096 Apr 12 16:18 pilot3
[2026-04-12 17:35:50] -rw------- 1 boinc boinc 195639680 Apr 12 17:34 HITS.49263191._052900.pool.root.1
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc       487 Apr 12 17:34 boinc_task_state.xml
[2026-04-12 17:35:50] -rw------- 1 boinc boinc      1019 Apr 12 17:34 memory_monitor_summary.json
[2026-04-12 17:35:50] -rw------- 1 boinc boinc    236105 Apr 12 17:34 log.49263191._052900.job.log.tgz.1
[2026-04-12 17:35:50] -rw------- 1 boinc boinc      6328 Apr 12 17:34 heartbeat_new.json
[2026-04-12 17:35:50] -rw------- 1 boinc boinc      6219 Apr 12 17:34 heartbeat.json
[2026-04-12 17:35:50] -rw------- 1 boinc boinc        95 Apr 12 17:35 pilot_heartbeat.json
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc      8192 Apr 12 17:35 boinc_mmap_file
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc        27 Apr 12 17:35 wrapper_checkpoint.txt
[2026-04-12 17:35:50] -rw------- 1 boinc boinc      4819 Apr 12 17:35 pilotlog.txt
[2026-04-12 17:35:50] -rw------- 1 boinc boinc    450710 Apr 12 17:35 log.49263191._052900.job.log.1
[2026-04-12 17:35:50] -rw------- 1 boinc boinc       357 Apr 12 17:35 output.list
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc       410 Apr 12 17:35 runtime_log
[2026-04-12 17:35:50] -rw------- 1 boinc boinc    706560 Apr 12 17:35 result.tar.gz
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc      8518 Apr 12 17:35 runtime_log.err
[2026-04-12 17:35:50] -rw------- 1 boinc boinc       657 Apr 12 17:35 e7cf4b21505d.diag
[2026-04-12 17:35:50] -rw-r--r-- 1 boinc boinc     10156 Apr 12 17:35 stderr.txt
[2026-04-12 17:35:50] HITS file was successfully produced:
[2026-04-12 17:35:50] -rw------- 1 boinc boinc 195639680 Apr 12 17:34 shared/HITS.pool.root.1
[2026-04-12 17:35:50]  *** Contents of shared directory: ***
[2026-04-12 17:35:50] total 409276
[2026-04-12 17:35:50] -rw-r--r-- 2 boinc boinc 222060871 Apr 12 16:18 ATLAS.root_0
[2026-04-12 17:35:50] -rw-r--r-- 2 boinc boinc    656931 Apr 12 16:18 input.tar.gz
[2026-04-12 17:35:50] -rw-r--r-- 2 boinc boinc     15665 Apr 12 16:18 start_atlas.sh
[2026-04-12 17:35:50] -rw------- 1 boinc boinc 195639680 Apr 12 17:34 HITS.pool.root.1
[2026-04-12 17:35:50] -rw------- 1 boinc boinc    706560 Apr 12 17:35 result.tar.gz
17:35:51 (3778963): run_atlas exited; CPU time 16793.238151
17:35:51 (3778963): called boinc_finish(0)

</stderr_txt>
]]>

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