Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:42:51 (3603096): wrapper (7.7.26015): starting
15:42:51 (3603096): wrapper: running run_atlas (--nthreads 4)
[2026-04-12 15:42:51] Arguments: --nthreads 4
[2026-04-12 15:42:51] Threads: 4
[2026-04-12 15:42:51] Checking for CVMFS
[2026-04-12 15:42:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 15:42:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 15:42:51] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 15:42:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 15:42:52] 2.9.2.0 2924976 3763 97556 158380 2 50 33963026 36864001 0 130560 0 2292033 99.988 144512 16878 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 15:42:52] CVMFS is ok
[2026-04-12 15:42:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 15:42:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 15:42:52] Further information can be found at the LHC@home message board.
[2026-04-12 15:42:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 15:42:52] Checking for apptainer binary...
[2026-04-12 15:42:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 15:42:52] Running /usr/bin/apptainer --version
[2026-04-12 15:42:52] apptainer version 1.4.1-1.1
[2026-04-12 15:42:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 15:42:52] thA309
[2026-04-12 15:42:52] apptainer works
[2026-04-12 15:42:52] Set ATHENA_PROC_NUMBER=4
[2026-04-12 15:42:52] Set ATHENA_CORE_NUMBER=4
[2026-04-12 15:42:52] Starting ATLAS job with PandaID=7087618457
[2026-04-12 15:42:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 17:18:18]  *** The last 200 lines of the pilot log: ***
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 17:18:18] 2026-04-12 15:17:28,126 | INFO     | job 7087618457 has completed (purged errors)
[2026-04-12 17:18:18] 2026-04-12 15:17:28,127 | INFO     | overall cleanup function is called
[2026-04-12 17:18:18] 2026-04-12 15:17:28,699 | INFO     | PID=3607211 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 17:18:18] 2026-04-12 15:17:29,133 | INFO     | --- collectZombieJob: --- 10, [3611732]
[2026-04-12 17:18:18] 2026-04-12 15:17:29,134 | INFO     | zombie collector waiting for pid 3611732
[2026-04-12 17:18:18] 2026-04-12 15:17:29,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 17:18:18] 2026-04-12 15:17:29,134 | INFO     | collected zombie processes
[2026-04-12 17:18:18] 2026-04-12 15:17:29,134 | INFO     | will attempt to kill all subprocesses of pid=3611732
[2026-04-12 17:18:18] 2026-04-12 15:17:29,183 | INFO     | process IDs to be killed: [3611732] (in reverse order)
[2026-04-12 17:18:18] 2026-04-12 15:17:29,222 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 17:18:18] 2026-04-12 15:17:29,222 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 17:18:18] 2026-04-12 15:17:29,224 | INFO     | did not find any defunct processes belonging to 3611732
[2026-04-12 17:18:18] 2026-04-12 15:17:29,225 | INFO     | did not find any defunct processes belonging to 3611732
[2026-04-12 17:18:18] 2026-04-12 15:17:29,225 | INFO     | Ready for new job
[2026-04-12 17:18:18] 2026-04-12 15:17:29,226 | INFO     | **************************************
[2026-04-12 17:18:18] 2026-04-12 15:17:29,226 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 17:18:18] 2026-04-12 15:17:29,226 | INFO     | **************************************
[2026-04-12 17:18:18] 2026-04-12 15:17:29,226 | INFO     | 
[2026-04-12 17:18:18] 2026-04-12 15:17:29,227 | INFO     | architecture information:
[2026-04-12 17:18:18] 2026-04-12 15:17:29,227 | INFO     | executing command: cat /etc/os-release
[2026-04-12 17:18:18] 2026-04-12 15:17:29,242 | INFO     | cat /etc/os-release:
[2026-04-12 17:18:18] NAME="CentOS Linux"
[2026-04-12 17:18:18] VERSION="7 (Core)"
[2026-04-12 17:18:18] ID="centos"
[2026-04-12 17:18:18] ID_LIKE="rhel fedora"
[2026-04-12 17:18:18] VERSION_ID="7"
[2026-04-12 17:18:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 17:18:18] ANSI_COLOR="0;31"
[2026-04-12 17:18:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 17:18:18] HOME_URL="https://www.centos.org/"
[2026-04-12 17:18:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 17:18:18] 
[2026-04-12 17:18:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 17:18:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 17:18:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 17:18:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 17:18:18] 
[2026-04-12 17:18:18] 2026-04-12 15:17:29,243 | INFO     | **************************************
[2026-04-12 17:18:18] 2026-04-12 15:17:29,746 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 17:18:18] 2026-04-12 15:17:29,765 | INFO     | sufficient remaining disk space (225113538560 B)
[2026-04-12 17:18:18] 2026-04-12 15:17:29,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 17:18:18] 2026-04-12 15:17:29,765 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 17:18:18] 2026-04-12 15:17:29,765 | INFO     | update_server=False
[2026-04-12 17:18:18] 2026-04-12 15:17:29,765 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 17:18:18] 2026-04-12 15:17:29,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 17:18:18] 2026-04-12 15:17:29,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 17:18:18] 2026-04-12 15:17:29,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 17:18:18] 2026-04-12 15:17:29,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 17:18:18] 2026-04-12 15:17:29,837 | INFO     | aborting loop
[2026-04-12 17:18:18] 2026-04-12 15:17:30,017 | INFO     | all payload control threads have been joined
[2026-04-12 17:18:18] 2026-04-12 15:17:30,207 | INFO     | all data control threads have been joined
[2026-04-12 17:18:18] 2026-04-12 15:17:30,362 | INFO     | all job control threads have been joined
[2026-04-12 17:18:18] 2026-04-12 15:17:30,771 | INFO     | [job] retrieve thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:30,772 | INFO     | [job] queue monitor thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:30,842 | INFO     | [job] job monitor thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:30,967 | INFO     | [payload] validate_post thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:31,023 | INFO     | [payload] control thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:31,213 | INFO     | [data] control thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:31,368 | INFO     | [job] control thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:31,772 | INFO     | [data] copytool_out thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:31,848 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:31,877 | INFO     | [job] validate thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:31,958 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:32,028 | INFO     | [payload] failed_post thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:32,087 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:32,244 | INFO     | [data] copytool_in thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:33,772 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:17:40,409 | INFO     | job.realtimelogging is not enabled
[2026-04-12 17:18:18] 2026-04-12 15:17:41,415 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 17:18:18] 2026-04-12 15:18:00,869 | INFO     | PID=3607211 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 17:18:18] 2026-04-12 15:18:00,869 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 17:18:18] 2026-04-12 15:18:00,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 17:18:18] 2026-04-12 15:18:00,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 17:18:18] 2026-04-12 15:18:12,145 | INFO     | [monitor] cgroup control has ended
[2026-04-12 17:18:18] 2026-04-12 15:18:13,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472803678016)>', '<ExcThread(monitor, started 140472290875136)>']
[2026-04-12 17:18:18] 2026-04-12 15:18:13,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 17:18:18] 2026-04-12 15:18:13,939 | INFO     | [monitor] control thread has ended
[2026-04-12 17:18:18] 2026-04-12 15:18:18,112 | INFO     | all workflow threads have been joined
[2026-04-12 17:18:18] 2026-04-12 15:18:18,112 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 17:18:18] 2026-04-12 15:18:18,112 | INFO     | traces error code: 0
[2026-04-12 17:18:18] 2026-04-12 15:18:18,112 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 17:18:18] 2026-04-12 15:18:18,204 [wrapper] ==== pilot stdout END ====
[2026-04-12 17:18:18] 2026-04-12 15:18:18,209 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 17:18:18] 2026-04-12 15:18:18,213 [wrapper] pilotpid: 3607211
[2026-04-12 17:18:18] 2026-04-12 15:18:18,217 [wrapper] Pilot exit status: 0
[2026-04-12 17:18:18] 2026-04-12 15:18:18,229 [wrapper] pandaids: 7087618457
[2026-04-12 17:18:18] 2026-04-12 15:18:18,255 [wrapper] cleanup supervisor_pilot 3617645 3607212
[2026-04-12 17:18:18] 2026-04-12 15:18:18,260 [wrapper] Test setup, not cleaning
[2026-04-12 17:18:18] 2026-04-12 15:18:18,264 [wrapper] apfmon messages muted
[2026-04-12 17:18:18] 2026-04-12 15:18:18,268 [wrapper] ==== wrapper stdout END ====
[2026-04-12 17:18:18] 2026-04-12 15:18:18,272 [wrapper] ==== wrapper stderr END ====
[2026-04-12 17:18:18]  *** Error codes and diagnostics ***
[2026-04-12 17:18:18]     "exeErrorCode": 0,
[2026-04-12 17:18:18]     "pilotErrorCode": 0,
[2026-04-12 17:18:18]  *** Listing of results directory ***
[2026-04-12 17:18:18] total 422300
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc    644190 Apr 12 01:36 pilot3.tar.gz
[2026-04-12 17:18:18] -rwx------ 1 boinc boinc     36322 Apr 12 02:17 runpilot2-wrapper.sh
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc      5094 Apr 12 02:20 queuedata.json
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc       100 Apr 12 15:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 17:18:18] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 15:42 run_atlas
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc       105 Apr 12 15:42 job.xml
[2026-04-12 17:18:18] -rw-r--r-- 2 boinc boinc 225419908 Apr 12 15:42 EVNT.48629115._000184.pool.root.1
[2026-04-12 17:18:18] drwxrwx--x 2 boinc boinc      4096 Apr 12 15:42 shared
[2026-04-12 17:18:18] -rw-r--r-- 2 boinc boinc    656947 Apr 12 15:42 input.tar.gz
[2026-04-12 17:18:18] -rw-r--r-- 2 boinc boinc     15665 Apr 12 15:42 start_atlas.sh
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc         0 Apr 12 15:42 boinc_setup_complete
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc      6292 Apr 12 15:42 init_data.xml
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc         0 Apr 12 15:42 boinc_lockfile
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc      2627 Apr 12 15:42 pandaJob.out
[2026-04-12 17:18:18] -rw------- 1 boinc boinc    997759 Apr 12 15:43 agis_schedconf.cvmfs.json
[2026-04-12 17:18:18] -rw------- 1 boinc boinc   1511579 Apr 12 15:43 agis_ddmendpoints.agis.ALL.json
[2026-04-12 17:18:18] -rw------- 1 boinc boinc       427 Apr 12 15:43 workernode_map.json
[2026-04-12 17:18:18] drwx------ 5 boinc boinc      4096 Apr 12 15:43 pilot3
[2026-04-12 17:18:18] -rw------- 1 boinc boinc 201341955 Apr 12 17:17 HITS.49645815._004593.pool.root.1
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc       487 Apr 12 17:17 boinc_task_state.xml
[2026-04-12 17:18:18] -rw------- 1 boinc boinc      1019 Apr 12 17:17 memory_monitor_summary.json
[2026-04-12 17:18:18] -rw------- 1 boinc boinc    259227 Apr 12 17:17 log.49645815._004593.job.log.tgz.1
[2026-04-12 17:18:18] -rw------- 1 boinc boinc      6327 Apr 12 17:17 heartbeat_new.json
[2026-04-12 17:18:18] -rw------- 1 boinc boinc      6218 Apr 12 17:17 heartbeat.json
[2026-04-12 17:18:18] -rw------- 1 boinc boinc        95 Apr 12 17:18 pilot_heartbeat.json
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc      8192 Apr 12 17:18 boinc_mmap_file
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc        27 Apr 12 17:18 wrapper_checkpoint.txt
[2026-04-12 17:18:18] -rw------- 1 boinc boinc      4819 Apr 12 17:18 pilotlog.txt
[2026-04-12 17:18:18] -rw------- 1 boinc boinc    547803 Apr 12 17:18 log.49645815._004593.job.log.1
[2026-04-12 17:18:18] -rw------- 1 boinc boinc       357 Apr 12 17:18 output.list
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc       410 Apr 12 17:18 runtime_log
[2026-04-12 17:18:18] -rw------- 1 boinc boinc    829440 Apr 12 17:18 result.tar.gz
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc      8518 Apr 12 17:18 runtime_log.err
[2026-04-12 17:18:18] -rw------- 1 boinc boinc       657 Apr 12 17:18 e48cb632ba91.diag
[2026-04-12 17:18:18] -rw-r--r-- 1 boinc boinc     12344 Apr 12 17:18 stderr.txt
[2026-04-12 17:18:18] HITS file was successfully produced:
[2026-04-12 17:18:18] -rw------- 1 boinc boinc 201341955 Apr 12 17:17 shared/HITS.pool.root.1
[2026-04-12 17:18:18]  *** Contents of shared directory: ***
[2026-04-12 17:18:18] total 418244
[2026-04-12 17:18:18] -rw-r--r-- 2 boinc boinc 225419908 Apr 12 15:42 ATLAS.root_0
[2026-04-12 17:18:18] -rw-r--r-- 2 boinc boinc    656947 Apr 12 15:42 input.tar.gz
[2026-04-12 17:18:18] -rw-r--r-- 2 boinc boinc     15665 Apr 12 15:42 start_atlas.sh
[2026-04-12 17:18:18] -rw------- 1 boinc boinc 201341955 Apr 12 17:17 HITS.pool.root.1
[2026-04-12 17:18:18] -rw------- 1 boinc boinc    829440 Apr 12 17:18 result.tar.gz
17:18:19 (3603096): run_atlas exited; CPU time 21259.813330
17:18:19 (3603096): called boinc_finish(0)

</stderr_txt>
]]>

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