Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:20:44 (1619373): wrapper (7.7.26015): starting
19:20:44 (1619373): wrapper: running run_atlas (--nthreads 8)
[2026-04-11 19:20:44] Arguments: --nthreads 8
[2026-04-11 19:20:44] Threads: 8
[2026-04-11 19:20:44] Checking for CVMFS
[2026-04-11 19:20:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 19:20:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 19:20:45] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 19:20:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 19:20:45] 2.13.3.0 11460 226543 238996 158360 1 237 24575519 32935936 41708 16776704 0 1666763225 99.641 1541322704 33170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-11 19:20:45] CVMFS is ok
[2026-04-11 19:20:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 19:20:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 19:20:45] Further information can be found at the LHC@home message board.
[2026-04-11 19:20:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 19:20:45] Checking for apptainer binary...
[2026-04-11 19:20:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 19:20:45] Running /usr/bin/apptainer --version
[2026-04-11 19:20:45] apptainer version 1.4.5-2.el9
[2026-04-11 19:20:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 19:20:46] c7-3-34.aglt2.org
[2026-04-11 19:20:46] apptainer works
[2026-04-11 19:20:46] Set ATHENA_PROC_NUMBER=8
[2026-04-11 19:20:46] Set ATHENA_CORE_NUMBER=8
[2026-04-11 19:20:46] Starting ATLAS job with PandaID=7087147852
[2026-04-11 19:20:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 02:13:54]  *** The last 200 lines of the pilot log: ***
[2026-04-12 02:13:54] 2026-04-12 05:32:53,432 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-12 02:13:54] 2026-04-12 05:32:53,432 | INFO     | reading metadata from: /tmp/boinchome/slots/5/PanDA_Pilot-7087147852/jobReport.json
[2026-04-12 02:13:54] 2026-04-12 05:32:53,465 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/5/workernode_map.json
[2026-04-12 02:13:54] 2026-04-12 05:32:53,466 | INFO     | this job has now completed (state=finished)
[2026-04-12 02:13:54] 2026-04-12 05:32:53,466 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-12 02:13:54] 2026-04-12 05:32:53,466 | INFO     | log transfer has been attempted: DONE
[2026-04-12 02:13:54] 2026-04-12 05:32:53,466 | INFO     | job 7087147852 has finished - writing final server update
[2026-04-12 02:13:54] 2026-04-12 05:32:53,467 | INFO     | total number of processed events: 400 (read)
[2026-04-12 02:13:54] 2026-04-12 05:32:53,693 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-7087147852/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 02:13:54] 2026-04-12 05:32:53,694 | INFO     | extracted standard info from prmon json
[2026-04-12 02:13:54] 2026-04-12 05:32:53,694 | INFO     | extracted standard memory fields from prmon json
[2026-04-12 02:13:54] 2026-04-12 05:32:53,694 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-12 02:13:54] 2026-04-12 05:32:53,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-12 02:13:54] 2026-04-12 05:32:54,125 | INFO     | fitting pss+swap vs Time
[2026-04-12 02:13:54] 2026-04-12 05:32:54,125 | INFO     | sum of square deviations: 15078625398.20826
[2026-04-12 02:13:54] 2026-04-12 05:32:54,183 | INFO     | sum of deviations: -18502727607.734238
[2026-04-12 02:13:54] 2026-04-12 05:32:54,184 | INFO     | mean x (centered): 0.0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,184 | INFO     | mean y: 2491793.5726027396
[2026-04-12 02:13:54] 2026-04-12 05:32:54,184 | INFO     | intersect: 2491793.5726027396
[2026-04-12 02:13:54] 2026-04-12 05:32:54,184 | INFO     | chi2: 2.9579645210154992
[2026-04-12 02:13:54] 2026-04-12 05:32:54,185 | INFO     | sum of square deviations: 14467397101.28892
[2026-04-12 02:13:54] 2026-04-12 05:32:54,200 | INFO     | sum of deviations: 4695277920.444467
[2026-04-12 02:13:54] 2026-04-12 05:32:54,200 | INFO     | mean x (centered): 0.0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,200 | INFO     | mean y: 2497518.472222222
[2026-04-12 02:13:54] 2026-04-12 05:32:54,200 | INFO     | intersect: 2497518.472222222
[2026-04-12 02:13:54] 2026-04-12 05:32:54,201 | INFO     | chi2: 2.275063331780886
[2026-04-12 02:13:54] 2026-04-12 05:32:54,201 | INFO     | current chi2=2.275063331780886 (change=23.086862076363452 %)
[2026-04-12 02:13:54] 2026-04-12 05:32:54,201 | INFO     | right removable region: 359
[2026-04-12 02:13:54] 2026-04-12 05:32:54,201 | INFO     | sum of square deviations: 14467408753.197142
[2026-04-12 02:13:54] 2026-04-12 05:32:54,208 | INFO     | sum of deviations: -96544532376.16943
[2026-04-12 02:13:54] 2026-04-12 05:32:54,209 | INFO     | mean x (centered): 0.0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,209 | INFO     | mean y: 2511184.980555556
[2026-04-12 02:13:54] 2026-04-12 05:32:54,209 | INFO     | intersect: 2511184.980555556
[2026-04-12 02:13:54] 2026-04-12 05:32:54,209 | INFO     | chi2: 0.8408793972006346
[2026-04-12 02:13:54] 2026-04-12 05:32:54,209 | INFO     | current chi2=0.8408793972006346 (change=71.57236365661504 %)
[2026-04-12 02:13:54] 2026-04-12 05:32:54,210 | INFO     | sum of square deviations: 13872936608.185993
[2026-04-12 02:13:54] 2026-04-12 05:32:54,217 | INFO     | sum of deviations: -88897157430.1522
[2026-04-12 02:13:54] 2026-04-12 05:32:54,217 | INFO     | mean x (centered): 0.0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,217 | INFO     | mean y: 2509222.5971830986
[2026-04-12 02:13:54] 2026-04-12 05:32:54,217 | INFO     | intersect: 2509222.5971830986
[2026-04-12 02:13:54] 2026-04-12 05:32:54,217 | INFO     | chi2: 0.830174309127353
[2026-04-12 02:13:54] 2026-04-12 05:32:54,217 | INFO     | current chi2=0.830174309127353 (change=1.273082454977475 %)
[2026-04-12 02:13:54] 2026-04-12 05:32:54,218 | INFO     | left removable region: 10
[2026-04-12 02:13:54] 2026-04-12 05:32:54,218 | INFO     | sum of square deviations: 13181336297.266445
[2026-04-12 02:13:54] 2026-04-12 05:32:54,225 | INFO     | sum of deviations: -65184762541.214966
[2026-04-12 02:13:54] 2026-04-12 05:32:54,225 | INFO     | mean x (centered): 0.0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,225 | INFO     | mean y: 2515413.575931232
[2026-04-12 02:13:54] 2026-04-12 05:32:54,225 | INFO     | intersect: 2515413.575931232
[2026-04-12 02:13:54] 2026-04-12 05:32:54,226 | INFO     | chi2: 0.13005171489484427
[2026-04-12 02:13:54] 2026-04-12 05:32:54,226 | INFO     | current memory leak: -4.95 B/s (using 349 data points, chi2=0.13)
[2026-04-12 02:13:54] 2026-04-12 05:32:54,242 | INFO     | could have reported an average CPU frequency of 3143 MHz (16 samples)
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | ..............................
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | . Timing measurements:
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | . get job = 0 s
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | . initial setup = 14 s
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | . payload setup = 29 s
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | . stage-in = 0 s
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | . payload execution = 22233 s
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | . stage-out = 4 s
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | . log creation = 0 s
[2026-04-12 02:13:54] 2026-04-12 05:32:54,243 | INFO     | ..............................
[2026-04-12 02:13:54] 2026-04-12 05:32:54,795 | INFO     | 
[2026-04-12 02:13:54] 2026-04-12 05:32:54,795 | INFO     | job summary report
[2026-04-12 02:13:54] 2026-04-12 05:32:54,795 | INFO     | --------------------------------------------------
[2026-04-12 02:13:54] 2026-04-12 05:32:54,795 | INFO     | PanDA job id: 7087147852
[2026-04-12 02:13:54] 2026-04-12 05:32:54,795 | INFO     | task id: 49263191
[2026-04-12 02:13:54] 2026-04-12 05:32:54,795 | INFO     | errors: (none)
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | pilot state: finished 
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | transexitcode: 0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | exeerrorcode: 0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | exeerrordiag: 
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | exitcode: 0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | exitmsg: OK
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | cpuconsumptiontime: 33233 s
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | nevents: 400
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | neventsw: 0
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | pid: 1629404
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | pgrp: 1629404
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | corecount: 8
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | event service: False
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | sizes: {0: 2279719, 1: 2281548, 11: 2281548, 22267: 2316291, 22272: 2325345, 22275: 2325483}
[2026-04-12 02:13:54] 2026-04-12 05:32:54,796 | INFO     | --------------------------------------------------
[2026-04-12 02:13:54] 2026-04-12 05:32:54,797 | INFO     | 
[2026-04-12 02:13:54] 2026-04-12 05:32:54,797 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 02:13:54] 2026-04-12 05:32:54,836 | INFO     | job 7087147852 has completed (purged errors)
[2026-04-12 02:13:54] 2026-04-12 05:32:54,837 | INFO     | overall cleanup function is called
[2026-04-12 02:13:54] 2026-04-12 05:32:55,956 | INFO     | --- collectZombieJob: --- 10, [1629404]
[2026-04-12 02:13:54] 2026-04-12 05:32:55,957 | INFO     | zombie collector waiting for pid 1629404
[2026-04-12 02:13:54] 2026-04-12 05:32:55,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 02:13:54] 2026-04-12 05:32:55,957 | INFO     | collected zombie processes
[2026-04-12 02:13:54] 2026-04-12 05:32:55,957 | INFO     | will attempt to kill all subprocesses of pid=1629404
[2026-04-12 02:13:54] 2026-04-12 05:32:56,655 | INFO     | number of running child processes to parent process 1629404: 1
[2026-04-12 02:13:54] 2026-04-12 05:32:56,656 | INFO     | maximum number of monitored processes: 6
[2026-04-12 02:13:54] 2026-04-12 05:32:56,665 | INFO     | aborting job monitoring since job object (job id=7087147852) has expired
[2026-04-12 02:13:54] 2026-04-12 05:32:57,130 | INFO     | PID=1623949 has CPU usage=15.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-04-12 02:13:54] 2026-04-12 05:32:57,130 | INFO     | .. there are 57 such processes running
[2026-04-12 02:13:54] 2026-04-12 05:32:58,839 | INFO     | process IDs to be killed: [1629404] (in reverse order)
[2026-04-12 02:13:54] 2026-04-12 05:32:59,119 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 02:13:54] 2026-04-12 05:32:59,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 02:13:54] 2026-04-12 05:32:59,205 | INFO     | did not find any defunct processes belonging to 1629404
[2026-04-12 02:13:54] 2026-04-12 05:32:59,313 | INFO     | did not find any defunct processes belonging to 1629404
[2026-04-12 02:13:54] 2026-04-12 05:32:59,336 | INFO     | Ready for new job
[2026-04-12 02:13:54] 2026-04-12 05:32:59,338 | INFO     | **************************************
[2026-04-12 02:13:54] 2026-04-12 05:32:59,338 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 02:13:54] 2026-04-12 05:32:59,338 | INFO     | **************************************
[2026-04-12 02:13:54] 2026-04-12 05:32:59,338 | INFO     | 
[2026-04-12 02:13:54] 2026-04-12 05:32:59,360 | INFO     | architecture information:
[2026-04-12 02:13:54] 2026-04-12 05:32:59,425 | INFO     | executing command: cat /etc/os-release
[2026-04-12 02:13:54] 2026-04-12 05:32:59,555 | INFO     | cat /etc/os-release:
[2026-04-12 02:13:54] NAME="CentOS Linux"
[2026-04-12 02:13:54] VERSION="7 (Core)"
[2026-04-12 02:13:54] ID="centos"
[2026-04-12 02:13:54] ID_LIKE="rhel fedora"
[2026-04-12 02:13:54] VERSION_ID="7"
[2026-04-12 02:13:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 02:13:54] ANSI_COLOR="0;31"
[2026-04-12 02:13:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 02:13:54] HOME_URL="https://www.centos.org/"
[2026-04-12 02:13:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 02:13:54] 
[2026-04-12 02:13:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 02:13:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 02:13:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 02:13:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 02:13:54] 
[2026-04-12 02:13:54] 2026-04-12 05:32:59,555 | INFO     | **************************************
[2026-04-12 02:13:54] 2026-04-12 05:33:00,059 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-04-12 02:13:54] 2026-04-12 05:33:00,129 | INFO     | sufficient remaining disk space (70712819712 B)
[2026-04-12 02:13:54] 2026-04-12 05:33:00,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 02:13:54] 2026-04-12 05:33:00,130 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 02:13:54] 2026-04-12 05:33:00,130 | INFO     | update_server=False
[2026-04-12 02:13:54] 2026-04-12 05:33:00,130 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 02:13:54] 2026-04-12 05:33:00,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 02:13:54] 2026-04-12 05:33:00,132 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 02:13:54] 2026-04-12 05:33:00,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 02:13:54] 2026-04-12 05:33:00,242 | INFO     | aborting loop
[2026-04-12 02:13:54] 2026-04-12 05:33:00,619 | INFO     | all job control threads have been joined
[2026-04-12 02:13:54] 2026-04-12 05:33:00,928 | INFO     | all payload control threads have been joined
[2026-04-12 02:13:54] 2026-04-12 05:33:01,135 | INFO     | [job] retrieve thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,140 | INFO     | [job] queue monitor thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,185 | INFO     | [job] validate thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,219 | INFO     | all data control threads have been joined
[2026-04-12 02:13:54] 2026-04-12 05:33:01,247 | INFO     | [job] job monitor thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,367 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,368 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,368 | INFO     | [data] copytool_in thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,376 | INFO     | [payload] failed_post thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,625 | INFO     | [job] control thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,784 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,810 | INFO     | [payload] validate_post thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:01,949 | INFO     | [payload] control thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:02,155 | INFO     | [data] copytool_out thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:02,229 | INFO     | [data] control thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:02,290 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:03,311 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 02:13:54] 2026-04-12 05:33:06,649 | INFO     | [monitor] cgroup control has ended
[2026-04-12 02:13:54] 2026-04-12 05:33:07,328 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 02:13:54] 2026-04-12 05:33:07,688 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701317826368)>', '<ExcThread(monitor, started 140700796557056)>']
[2026-04-12 02:13:54] 2026-04-12 05:33:12,717 | INFO     | all workflow threads have been joined
[2026-04-12 02:13:54] 2026-04-12 05:33:12,717 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 02:13:54] 2026-04-12 05:33:12,718 | INFO     | traces error code: 0
[2026-04-12 02:13:54] 2026-04-12 05:33:12,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 02:13:54] 2026-04-12 05:33:31,087 | INFO     | PID=1623949 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 02:13:54] 2026-04-12 05:33:31,087 | INFO     | .. there are 57 such processes running
[2026-04-12 02:13:54] 2026-04-12 05:33:31,087 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 02:13:54] 2026-04-12 05:33:31,087 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 02:13:54] 2026-04-12 05:33:31,087 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 02:13:54] 2026-04-12 05:33:31,087 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 02:13:54] 2026-04-12 05:33:31,088 | INFO     | [monitor] control thread has ended
[2026-04-12 02:13:54] 2026-04-12 05:33:31,216 [wrapper] ==== pilot stdout END ====
[2026-04-12 02:13:54] 2026-04-12 05:33:31,228 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 02:13:54] 2026-04-12 05:33:31,232 [wrapper] pilotpid: 1623949
[2026-04-12 02:13:54] 2026-04-12 05:33:31,236 [wrapper] Pilot exit status: 0
[2026-04-12 02:13:54] 2026-04-12 05:33:31,246 [wrapper] pandaids: 7087147852
[2026-04-12 02:13:54] 2026-04-12 05:33:31,382 [wrapper] cleanup supervisor_pilot 3028095 1623951
[2026-04-12 02:13:54] 2026-04-12 05:33:31,389 [wrapper] Test setup, not cleaning
[2026-04-12 02:13:54] 2026-04-12 05:33:31,394 [wrapper] apfmon messages muted
[2026-04-12 02:13:54] 2026-04-12 05:33:31,398 [wrapper] ==== wrapper stdout END ====
[2026-04-12 02:13:54] 2026-04-12 05:33:31,403 [wrapper] ==== wrapper stderr END ====
[2026-04-12 02:13:54]  *** Error codes and diagnostics ***
[2026-04-12 02:13:54]     "exeErrorCode": 0,
[2026-04-12 02:13:54]     "pilotErrorCode": 0,
[2026-04-12 02:13:54]  *** Listing of results directory ***
[2026-04-12 02:13:54] total 414220
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas      5094 Apr 11 14:42 queuedata.json
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas    644190 Apr 11 14:42 pilot3.tar.gz
[2026-04-12 02:13:54] -rwx------. 1 boincer umatlas     36322 Apr 11 14:42 runpilot2-wrapper.sh
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas       100 Apr 11 19:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 02:13:54] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 11 19:20 run_atlas
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas       105 Apr 11 19:20 job.xml
[2026-04-12 02:13:54] -rw-r--r--. 2 boincer umatlas 222581452 Apr 11 19:20 EVNT.49263189._001218.pool.root.1
[2026-04-12 02:13:54] -rw-r--r--. 2 boincer umatlas     15665 Apr 11 19:20 start_atlas.sh
[2026-04-12 02:13:54] drwxrwx--x. 2 boincer umatlas      4096 Apr 11 19:20 shared
[2026-04-12 02:13:54] -rw-r--r--. 2 boincer umatlas    656912 Apr 11 19:20 input.tar.gz
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas         0 Apr 11 19:20 boinc_lockfile
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas      2577 Apr 11 19:20 pandaJob.out
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas        57 Apr 11 19:20 setup.sh.local
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas    997759 Apr 11 19:21 agis_schedconf.cvmfs.json
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas       429 Apr 11 19:21 workernode_map.json
[2026-04-12 02:13:54] drwx------. 5 boincer umatlas      4096 Apr 11 19:21 pilot3
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas 192892415 Apr 12 01:31 HITS.49263191._050980.pool.root.1
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas       488 Apr 12 01:31 boinc_task_state.xml
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas        95 Apr 12 01:32 pilot_heartbeat.json
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas      1046 Apr 12 01:32 memory_monitor_summary.json
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas   1511579 Apr 12 01:32 agis_ddmendpoints.agis.ALL.json
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas    446012 Apr 12 01:32 log.49263191._050980.job.log.tgz.1
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas      6365 Apr 12 01:32 heartbeat_new.json
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas      6256 Apr 12 01:32 heartbeat.json
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas       823 Apr 12 01:33 pilotlog.txt
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas   1866205 Apr 12 01:33 log.49263191._050980.job.log.1
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas       357 Apr 12 01:33 output.list
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas       410 Apr 12 01:33 runtime_log
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas   2334720 Apr 12 01:33 result.tar.gz
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas      8959 Apr 12 01:33 runtime_log.err
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas       660 Apr 12 01:33 96085b33fff6.diag
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas      6861 Apr 12 02:13 init_data.xml
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas      8192 Apr 12 02:13 boinc_mmap_file
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas        28 Apr 12 02:13 wrapper_checkpoint.txt
[2026-04-12 02:13:54] -rw-r--r--. 1 boincer umatlas     21313 Apr 12 02:13 stderr.txt
[2026-04-12 02:13:54] HITS file was successfully produced:
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas 192892415 Apr 12 01:31 shared/HITS.pool.root.1
[2026-04-12 02:13:54]  *** Contents of shared directory: ***
[2026-04-12 02:13:54] total 408688
[2026-04-12 02:13:54] -rw-r--r--. 2 boincer umatlas 222581452 Apr 11 19:20 ATLAS.root_0
[2026-04-12 02:13:54] -rw-r--r--. 2 boincer umatlas     15665 Apr 11 19:20 start_atlas.sh
[2026-04-12 02:13:54] -rw-r--r--. 2 boincer umatlas    656912 Apr 11 19:20 input.tar.gz
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas 192892415 Apr 12 01:31 HITS.pool.root.1
[2026-04-12 02:13:54] -rw-------. 1 boincer umatlas   2334720 Apr 12 01:33 result.tar.gz
02:13:56 (1619373): run_atlas exited; CPU time 34421.687775
02:13:56 (1619373): called boinc_finish(0)

</stderr_txt>
]]>

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