Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:37:59 (3331): wrapper (7.7.26015): starting
02:37:59 (3331): wrapper: running run_atlas (--nthreads 4)
[2026-04-12 02:37:59] Arguments: --nthreads 4
[2026-04-12 02:37:59] Threads: 4
[2026-04-12 02:37:59] Checking for CVMFS
[2026-04-12 02:38:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 02:38:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 02:38:03] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 02:38:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 02:38:03] 2.11.5.0 3540 0 25264 158362 3 1 3122278 4096001 0 130560 0 0 0.000 1337 4101 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2026-04-12 02:38:03] CVMFS is ok
[2026-04-12 02:38:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 02:38:03] Checking for apptainer binary...
[2026-04-12 02:38:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 02:38:03] Running /usr/bin/apptainer --version
[2026-04-12 02:38:04] apptainer version 1.0.3
[2026-04-12 02:38:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 02:38:05] TeeC28
[2026-04-12 02:38:05] apptainer works
[2026-04-12 02:38:05] Set ATHENA_PROC_NUMBER=4
[2026-04-12 02:38:05] Set ATHENA_CORE_NUMBER=4
[2026-04-12 02:38:05] Starting ATLAS job with PandaID=7087553871
[2026-04-12 02:38:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/users/jmp/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 05:19:49]  *** The last 200 lines of the pilot log: ***
[2026-04-12 05:19:49] 2026-04-12 04:19:05,032 | INFO     | monitor loop #734: job 0:7087553871 is in state 'finished'
[2026-04-12 05:19:49] 2026-04-12 04:19:05,043 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,059 | INFO     | job 7087553871 has state=finished
[2026-04-12 05:19:49] 2026-04-12 04:19:05,059 | INFO     | preparing for final server update for job 7087553871 in state='finished'
[2026-04-12 05:19:49] 2026-04-12 04:19:05,059 | INFO     | reading metadata from: /home/m/users/jmp/BOINC/slots/1/PanDA_Pilot-7087553871/jobReport.json
[2026-04-12 05:19:49] 2026-04-12 04:19:05,061 | INFO     | added worker_node to metadata from /home/m/users/jmp/BOINC/slots/1/workernode_map.json
[2026-04-12 05:19:49] 2026-04-12 04:19:05,061 | INFO     | this job has now completed (state=finished)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,061 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,062 | INFO     | log transfer has been attempted: DONE
[2026-04-12 05:19:49] 2026-04-12 04:19:05,062 | INFO     | job 7087553871 has finished - writing final server update
[2026-04-12 05:19:49] 2026-04-12 04:19:05,062 | INFO     | total number of processed events: 400 (read)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,080 | INFO     | using path: /home/m/users/jmp/BOINC/slots/1/PanDA_Pilot-7087553871/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,081 | INFO     | extracted standard info from prmon json
[2026-04-12 05:19:49] 2026-04-12 04:19:05,081 | INFO     | extracted standard memory fields from prmon json
[2026-04-12 05:19:49] 2026-04-12 04:19:05,081 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-12 05:19:49] 2026-04-12 04:19:05,081 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-12 05:19:49] 2026-04-12 04:19:05,085 | INFO     | fitting pss+swap vs Time
[2026-04-12 05:19:49] 2026-04-12 04:19:05,085 | INFO     | sum of square deviations: 1223016419.5
[2026-04-12 05:19:49] 2026-04-12 04:19:05,087 | INFO     | sum of deviations: -14611826479.000006
[2026-04-12 05:19:49] 2026-04-12 04:19:05,087 | INFO     | mean x (centered): 0.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,087 | INFO     | mean y: 2378301.4556962023
[2026-04-12 05:19:49] 2026-04-12 04:19:05,087 | INFO     | intersect: 2378301.4556962023
[2026-04-12 05:19:49] 2026-04-12 04:19:05,088 | INFO     | chi2: 1.7788671460579424
[2026-04-12 05:19:49] 2026-04-12 04:19:05,088 | INFO     | sum of square deviations: 1110539892.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,090 | INFO     | sum of deviations: -13914441539.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,090 | INFO     | mean x (centered): 0.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,090 | INFO     | mean y: 2379247.274509804
[2026-04-12 05:19:49] 2026-04-12 04:19:05,090 | INFO     | intersect: 2379247.274509804
[2026-04-12 05:19:49] 2026-04-12 04:19:05,091 | INFO     | chi2: 1.7757029663669357
[2026-04-12 05:19:49] 2026-04-12 04:19:05,091 | INFO     | current chi2=1.7757029663669357 (change=0.17787611053577915 %)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,091 | INFO     | right removable region: 152
[2026-04-12 05:19:49] 2026-04-12 04:19:05,091 | INFO     | sum of square deviations: 1110539892.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,093 | INFO     | sum of deviations: -34929941084.99999
[2026-04-12 05:19:49] 2026-04-12 04:19:05,093 | INFO     | mean x (centered): 0.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,093 | INFO     | mean y: 2405354.045751634
[2026-04-12 05:19:49] 2026-04-12 04:19:05,093 | INFO     | intersect: 2405354.045751634
[2026-04-12 05:19:49] 2026-04-12 04:19:05,093 | INFO     | chi2: 0.32757599800645837
[2026-04-12 05:19:49] 2026-04-12 04:19:05,093 | INFO     | current chi2=0.32757599800645837 (change=81.58513418315792 %)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,094 | INFO     | sum of square deviations: 1005179777.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,095 | INFO     | sum of deviations: -27399403062.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,095 | INFO     | mean x (centered): 0.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,095 | INFO     | mean y: 2394442.0945945946
[2026-04-12 05:19:49] 2026-04-12 04:19:05,095 | INFO     | intersect: 2394442.0945945946
[2026-04-12 05:19:49] 2026-04-12 04:19:05,096 | INFO     | chi2: 0.300411626487091
[2026-04-12 05:19:49] 2026-04-12 04:19:05,096 | INFO     | current chi2=0.300411626487091 (change=8.292540260789126 %)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,096 | INFO     | left removable region: 10
[2026-04-12 05:19:49] 2026-04-12 04:19:05,096 | INFO     | sum of square deviations: 887813855.5
[2026-04-12 05:19:49] 2026-04-12 04:19:05,098 | INFO     | sum of deviations: -26178591029.999996
[2026-04-12 05:19:49] 2026-04-12 04:19:05,098 | INFO     | mean x (centered): 0.0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,098 | INFO     | mean y: 2396346.61971831
[2026-04-12 05:19:49] 2026-04-12 04:19:05,098 | INFO     | intersect: 2396346.61971831
[2026-04-12 05:19:49] 2026-04-12 04:19:05,098 | INFO     | chi2: 0.2934694912682096
[2026-04-12 05:19:49] 2026-04-12 04:19:05,098 | INFO     | current memory leak: -29.49 B/s (using 142 data points, chi2=0.29)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,099 | INFO     | could have reported an average CPU frequency of 3199 MHz (9 samples)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,099 | INFO     | ..............................
[2026-04-12 05:19:49] 2026-04-12 04:19:05,099 | INFO     | . Timing measurements:
[2026-04-12 05:19:49] 2026-04-12 04:19:05,099 | INFO     | . get job = 0 s
[2026-04-12 05:19:49] 2026-04-12 04:19:05,099 | INFO     | . initial setup = 7 s
[2026-04-12 05:19:49] 2026-04-12 04:19:05,099 | INFO     | . payload setup = 9 s
[2026-04-12 05:19:49] 2026-04-12 04:19:05,099 | INFO     | . stage-in = 0 s
[2026-04-12 05:19:49] 2026-04-12 04:19:05,099 | INFO     | . payload execution = 9609 s
[2026-04-12 05:19:49] 2026-04-12 04:19:05,100 | INFO     | . stage-out = 0 s
[2026-04-12 05:19:49] 2026-04-12 04:19:05,100 | INFO     | . log creation = 0 s
[2026-04-12 05:19:49] 2026-04-12 04:19:05,100 | INFO     | ..............................
[2026-04-12 05:19:49] 2026-04-12 04:19:05,561 | INFO     | 
[2026-04-12 05:19:49] 2026-04-12 04:19:05,562 | INFO     | job summary report
[2026-04-12 05:19:49] 2026-04-12 04:19:05,562 | INFO     | --------------------------------------------------
[2026-04-12 05:19:49] 2026-04-12 04:19:05,562 | INFO     | PanDA job id: 7087553871
[2026-04-12 05:19:49] 2026-04-12 04:19:05,563 | INFO     | task id: 49263208
[2026-04-12 05:19:49] 2026-04-12 04:19:05,563 | INFO     | errors: (none)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,564 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-12 05:19:49] 2026-04-12 04:19:05,564 | INFO     | pilot state: finished 
[2026-04-12 05:19:49] 2026-04-12 04:19:05,564 | INFO     | transexitcode: 0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,565 | INFO     | exeerrorcode: 0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,565 | INFO     | exeerrordiag: 
[2026-04-12 05:19:49] 2026-04-12 04:19:05,565 | INFO     | exitcode: 0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,565 | INFO     | exitmsg: OK
[2026-04-12 05:19:49] 2026-04-12 04:19:05,566 | INFO     | cpuconsumptiontime: 36845 s
[2026-04-12 05:19:49] 2026-04-12 04:19:05,566 | INFO     | nevents: 400
[2026-04-12 05:19:49] 2026-04-12 04:19:05,566 | INFO     | neventsw: 0
[2026-04-12 05:19:49] 2026-04-12 04:19:05,566 | INFO     | pid: 11984
[2026-04-12 05:19:49] 2026-04-12 04:19:05,566 | INFO     | pgrp: 11984
[2026-04-12 05:19:49] 2026-04-12 04:19:05,566 | INFO     | corecount: 4
[2026-04-12 05:19:49] 2026-04-12 04:19:05,567 | INFO     | event service: False
[2026-04-12 05:19:49] 2026-04-12 04:19:05,567 | INFO     | sizes: {0: 2279953, 1: 2281555, 11: 2281555, 9623: 2310042, 9624: 2319058, 9626: 2319500}
[2026-04-12 05:19:49] 2026-04-12 04:19:05,567 | INFO     | --------------------------------------------------
[2026-04-12 05:19:49] 2026-04-12 04:19:05,567 | INFO     | 
[2026-04-12 05:19:49] 2026-04-12 04:19:05,567 | INFO     | executing command: ls -lF /home/m/users/jmp/BOINC/slots/1
[2026-04-12 05:19:49] 2026-04-12 04:19:05,579 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,579 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,579 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,580 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,580 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,580 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,580 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,580 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,580 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,580 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,581 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 05:19:49] 2026-04-12 04:19:05,582 | INFO     | job 7087553871 has completed (purged errors)
[2026-04-12 05:19:49] 2026-04-12 04:19:05,582 | INFO     | overall cleanup function is called
[2026-04-12 05:19:49] 2026-04-12 04:19:06,587 | INFO     | --- collectZombieJob: --- 10, [11984]
[2026-04-12 05:19:49] 2026-04-12 04:19:06,587 | INFO     | zombie collector waiting for pid 11984
[2026-04-12 05:19:49] 2026-04-12 04:19:06,588 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 05:19:49] 2026-04-12 04:19:06,588 | INFO     | collected zombie processes
[2026-04-12 05:19:49] 2026-04-12 04:19:06,588 | INFO     | will attempt to kill all subprocesses of pid=11984
[2026-04-12 05:19:49] 2026-04-12 04:19:06,663 | INFO     | process IDs to be killed: [11984] (in reverse order)
[2026-04-12 05:19:49] 2026-04-12 04:19:06,688 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 05:19:49] 2026-04-12 04:19:06,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 05:19:49] 2026-04-12 04:19:06,690 | INFO     | did not find any defunct processes belonging to 11984
[2026-04-12 05:19:49] 2026-04-12 04:19:06,692 | INFO     | did not find any defunct processes belonging to 11984
[2026-04-12 05:19:49] 2026-04-12 04:19:06,692 | INFO     | Ready for new job
[2026-04-12 05:19:49] 2026-04-12 04:19:06,693 | INFO     | **************************************
[2026-04-12 05:19:49] 2026-04-12 04:19:06,693 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 05:19:49] 2026-04-12 04:19:06,693 | INFO     | **************************************
[2026-04-12 05:19:49] 2026-04-12 04:19:06,693 | INFO     | 
[2026-04-12 05:19:49] 2026-04-12 04:19:06,711 | INFO     | architecture information:
[2026-04-12 05:19:49] 2026-04-12 04:19:06,712 | INFO     | executing command: cat /etc/os-release
[2026-04-12 05:19:49] 2026-04-12 04:19:06,718 | INFO     | cat /etc/os-release:
[2026-04-12 05:19:49] NAME="CentOS Linux"
[2026-04-12 05:19:49] VERSION="7 (Core)"
[2026-04-12 05:19:49] ID="centos"
[2026-04-12 05:19:49] ID_LIKE="rhel fedora"
[2026-04-12 05:19:49] VERSION_ID="7"
[2026-04-12 05:19:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 05:19:49] ANSI_COLOR="0;31"
[2026-04-12 05:19:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 05:19:49] HOME_URL="https://www.centos.org/"
[2026-04-12 05:19:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 05:19:49] 
[2026-04-12 05:19:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 05:19:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 05:19:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 05:19:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 05:19:49] 
[2026-04-12 05:19:49] 2026-04-12 04:19:06,718 | INFO     | **************************************
[2026-04-12 05:19:49] 2026-04-12 04:19:07,222 | INFO     | executing command: df -mP /home/m/users/jmp/BOINC/slots/1
[2026-04-12 05:19:49] 2026-04-12 04:19:07,232 | INFO     | sufficient remaining disk space (413994582016 B)
[2026-04-12 05:19:49] 2026-04-12 04:19:07,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 05:19:49] 2026-04-12 04:19:07,233 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 05:19:49] 2026-04-12 04:19:07,233 | INFO     | update_server=False
[2026-04-12 05:19:49] 2026-04-12 04:19:07,233 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 05:19:49] 2026-04-12 04:19:07,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 05:19:49] 2026-04-12 04:19:07,551 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-12 05:19:49] 2026-04-12 04:19:07,552 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-12 05:19:49] 2026-04-12 04:19:07,552 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 05:19:49] 2026-04-12 04:19:07,553 | INFO     | will abort loop
[2026-04-12 05:19:49] 2026-04-12 04:19:08,218 | INFO     | all data control threads have been joined
[2026-04-12 05:19:49] 2026-04-12 04:19:08,239 | INFO     | [job] retrieve thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:08,386 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:08,452 | INFO     | all job control threads have been joined
[2026-04-12 05:19:49] 2026-04-12 04:19:08,555 | INFO     | [job] job monitor thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:08,570 | INFO     | all payload control threads have been joined
[2026-04-12 05:19:49] 2026-04-12 04:19:08,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 05:19:49] 2026-04-12 04:19:08,633 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:08,640 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:08,882 | INFO     | [payload] validate_post thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:09,071 | INFO     | [data] copytool_in thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:09,225 | INFO     | [data] control thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:09,458 | INFO     | [job] control thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:09,561 | INFO     | [payload] failed_post thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:09,575 | INFO     | [payload] control thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:09,735 | INFO     | [job] validate thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:10,209 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 05:19:49] 2026-04-12 04:19:10,631 | INFO     | [data] copytool_out thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:11,215 | INFO     | [job] queue monitor thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:11,240 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:17,895 | INFO     | job.realtimelogging is not enabled
[2026-04-12 05:19:49] 2026-04-12 04:19:18,901 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 05:19:49] 2026-04-12 04:19:37,308 | INFO     | PID=7603 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-12 05:19:49] 2026-04-12 04:19:37,309 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 05:19:49] 2026-04-12 04:19:37,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 05:19:49] 2026-04-12 04:19:37,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 05:19:49] 2026-04-12 04:19:43,157 | INFO     | [monitor] cgroup control has ended
[2026-04-12 05:19:49] 2026-04-12 04:19:44,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140643045033792)>', '<ExcThread(monitor, started 140642755782400)>']
[2026-04-12 05:19:49] 2026-04-12 04:19:45,341 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 05:19:49] 2026-04-12 04:19:45,342 | INFO     | [monitor] control thread has ended
[2026-04-12 05:19:49] 2026-04-12 04:19:49,420 | INFO     | all workflow threads have been joined
[2026-04-12 05:19:49] 2026-04-12 04:19:49,421 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 05:19:49] 2026-04-12 04:19:49,421 | INFO     | traces error code: 0
[2026-04-12 05:19:49] 2026-04-12 04:19:49,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 05:19:49] 2026-04-12 04:19:49,534 [wrapper] ==== pilot stdout END ====
[2026-04-12 05:19:49] 2026-04-12 04:19:49,535 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 05:19:49] 2026-04-12 04:19:49,537 [wrapper] pilotpid: 7603
[2026-04-12 05:19:49] 2026-04-12 04:19:49,539 [wrapper] Pilot exit status: 0
[2026-04-12 05:19:49] 2026-04-12 04:19:49,554 [wrapper] pandaids: 7087553871
[2026-04-12 05:19:49] 2026-04-12 04:19:49,570 [wrapper] cleanup supervisor_pilot 16943 7604
[2026-04-12 05:19:49] 2026-04-12 04:19:49,572 [wrapper] Test setup, not cleaning
[2026-04-12 05:19:49] 2026-04-12 04:19:49,574 [wrapper] apfmon messages muted
[2026-04-12 05:19:49] 2026-04-12 04:19:49,576 [wrapper] ==== wrapper stdout END ====
[2026-04-12 05:19:49] 2026-04-12 04:19:49,577 [wrapper] ==== wrapper stderr END ====
[2026-04-12 05:19:49]  *** Error codes and diagnostics ***
[2026-04-12 05:19:49]     "exeErrorCode": 0,
[2026-04-12 05:19:49]     "pilotErrorCode": 0,
[2026-04-12 05:19:49]  *** Listing of results directory ***
[2026-04-12 05:19:49] total 409824
[2026-04-12 05:19:49] -rw-r--r-- 1 m m    644190 Apr 11 23:43 pilot3.tar.gz
[2026-04-12 05:19:49] -rwx------ 1 m m     36322 Apr 11 23:47 runpilot2-wrapper.sh
[2026-04-12 05:19:49] -rw-r--r-- 1 m m      5094 Apr 11 23:51 queuedata.json
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m       100 Apr 12 02:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 05:19:49] -rwxr-xr-x 1 m m      7986 Apr 12 02:37 run_atlas
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m       105 Apr 12 02:37 job.xml
[2026-04-12 05:19:49] -rw-r--r-- 2 m m     15665 Apr 12 02:37 start_atlas.sh
[2026-04-12 05:19:49] drwxrwx--x 2 m m      4096 Apr 12 02:37 shared
[2026-04-12 05:19:49] -rw-r--r-- 2 m m    656927 Apr 12 02:37 input.tar.gz
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m      5951 Apr 12 02:37 init_data.xml
[2026-04-12 05:19:49] -rw-r--r-- 2 m m 222480415 Apr 12 02:37 EVNT.49263206._000983.pool.root.1
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m         0 Apr 12 02:37 boinc_lockfile
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m      2575 Apr 12 02:38 pandaJob.out
[2026-04-12 05:19:49] -rw------- 1 m m    997775 Apr 12 02:38 agis_schedconf.cvmfs.json
[2026-04-12 05:19:49] -rw------- 1 m m   1511579 Apr 12 02:38 agis_ddmendpoints.agis.ALL.json
[2026-04-12 05:19:49] -rw------- 1 m m       415 Apr 12 02:38 workernode_map.json
[2026-04-12 05:19:49] drwx------ 5 m m      4096 Apr 12 02:38 pilot3
[2026-04-12 05:19:49] -rw------- 1 m m 190739056 Apr 12 05:18 HITS.49263208._038184.pool.root.1
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m       487 Apr 12 05:18 boinc_task_state.xml
[2026-04-12 05:19:49] -rw------- 1 m m      1025 Apr 12 05:18 memory_monitor_summary.json
[2026-04-12 05:19:49] -rw------- 1 m m    285829 Apr 12 05:19 log.49263208._038184.job.log.tgz.1
[2026-04-12 05:19:49] -rw------- 1 m m      6334 Apr 12 05:19 heartbeat_new.json
[2026-04-12 05:19:49] -rw------- 1 m m      6225 Apr 12 05:19 heartbeat.json
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m      8192 Apr 12 05:19 boinc_mmap_file
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m        27 Apr 12 05:19 wrapper_checkpoint.txt
[2026-04-12 05:19:49] -rw------- 1 m m        95 Apr 12 05:19 pilot_heartbeat.json
[2026-04-12 05:19:49] -rw------- 1 m m      5008 Apr 12 05:19 pilotlog.txt
[2026-04-12 05:19:49] -rw------- 1 m m    907357 Apr 12 05:19 log.49263208._038184.job.log.1
[2026-04-12 05:19:49] -rw------- 1 m m       357 Apr 12 05:19 output.list
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m       410 Apr 12 05:19 runtime_log
[2026-04-12 05:19:49] -rw------- 1 m m   1208320 Apr 12 05:19 result.tar.gz
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m      8510 Apr 12 05:19 runtime_log.err
[2026-04-12 05:19:49] -rw------- 1 m m       643 Apr 12 05:19 cf7f5e3da228.diag
[2026-04-12 05:19:49] -rw-rw-r-- 1 m m     20858 Apr 12 05:19 stderr.txt
[2026-04-12 05:19:49] HITS file was successfully produced:
[2026-04-12 05:19:49] -rw------- 1 m m 190739056 Apr 12 05:18 shared/HITS.pool.root.1
[2026-04-12 05:19:49]  *** Contents of shared directory: ***
[2026-04-12 05:19:49] total 405384
[2026-04-12 05:19:49] -rw-r--r-- 2 m m     15665 Apr 12 02:37 start_atlas.sh
[2026-04-12 05:19:49] -rw-r--r-- 2 m m    656927 Apr 12 02:37 input.tar.gz
[2026-04-12 05:19:49] -rw-r--r-- 2 m m 222480415 Apr 12 02:37 ATLAS.root_0
[2026-04-12 05:19:49] -rw------- 1 m m 190739056 Apr 12 05:18 HITS.pool.root.1
[2026-04-12 05:19:49] -rw------- 1 m m   1208320 Apr 12 05:19 result.tar.gz
05:19:51 (3331): run_atlas exited; CPU time 36941.979219
05:19:51 (3331): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN