Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:58:58 (18115): wrapper (7.7.26015): starting
00:58:58 (18115): wrapper: running run_atlas (--nthreads 8)
[2026-04-12 00:58:59] Arguments: --nthreads 8
[2026-04-12 00:58:59] Threads: 8
[2026-04-12 00:58:59] Checking for CVMFS
[2026-04-12 00:58:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 00:58:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 00:58:59] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 00:58:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 00:58:59] 2.11.0.0 5945 48274 88128 158359 3 188 2303363 4096001 5414 130560 1 13803850 99.835 3624386 281 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-04-12 00:58:59] CVMFS is ok
[2026-04-12 00:58:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 00:58:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 00:58:59] Further information can be found at the LHC@home message board.
[2026-04-12 00:58:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 00:58:59] Checking for apptainer binary...
[2026-04-12 00:58:59] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-04-12 00:58:59] apptainer is not installed, using version from CVMFS
[2026-04-12 00:58:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 00:58:59] WARNING: Environment variable TMPDIR already has value [/tmp/job_11491344/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node006
[2026-04-12 00:58:59] apptainer works
[2026-04-12 00:58:59] Set ATHENA_PROC_NUMBER=8
[2026-04-12 00:58:59] Set ATHENA_CORE_NUMBER=8
[2026-04-12 00:58:59] Starting ATLAS job with PandaID=7087146148
[2026-04-12 00:58:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11491344/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 01:48:17]  *** The last 200 lines of the pilot log: ***
[2026-04-12 01:48:17]  protocol_id=None
[2026-04-12 01:48:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-12 01:48:17]  replicas=None
[2026-04-12 01:48:17]  scope=mc23_13p6TeV
[2026-04-12 01:48:17]  status=None
[2026-04-12 01:48:17]  status_code=0
[2026-04-12 01:48:17]  storage_token=
[2026-04-12 01:48:17]  surl=/tmp/job_11491344/atlas/pilot/slots/0/PanDA_Pilot-7087146148/log.49263191._050142.job.log.tgz.1
[2026-04-12 01:48:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/61/log.49263191._050142.job.log.tgz.1
[2026-04-12 01:48:17]  workdir=None
[2026-04-12 01:48:17] ]
[2026-04-12 01:48:17] 2026-04-11 23:47:25,167 | INFO     | transferring file log.49263191._050142.job.log.tgz.1 from /tmp/job_11491344/atlas/pilot/slots/0/PanDA_Pilot-7087146148/log.49263191._050142.job.log.tgz.1 to /tmp/j
[2026-04-12 01:48:17] 2026-04-11 23:47:25,167 | INFO     | executing command: /usr/bin/env mv /tmp/job_11491344/atlas/pilot/slots/0/PanDA_Pilot-7087146148/log.49263191._050142.job.log.tgz.1 /tmp/job_11491344/atlas/pilot/sl
[2026-04-12 01:48:17] 2026-04-11 23:47:25,174 | INFO     | adding to output.list: log.49263191._050142.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/61/log.49263191._050142.job.log.tg
[2026-04-12 01:48:17] 2026-04-11 23:47:25,175 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-12 01:48:17] 2026-04-11 23:47:25,175 | INFO     | summary of transferred files:
[2026-04-12 01:48:17] 2026-04-11 23:47:25,175 | INFO     |  -- lfn=log.49263191._050142.job.log.tgz.1, status_code=0, status=transferred
[2026-04-12 01:48:17] 2026-04-11 23:47:25,175 | INFO     | stage-out finished correctly
[2026-04-12 01:48:17] 2026-04-11 23:47:26,090 | INFO     | PID=21965 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-12 01:48:17] 2026-04-11 23:47:27,070 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-12 01:48:17] 2026-04-11 23:47:27,555 | INFO     | job 7087146148 has state=finished
[2026-04-12 01:48:17] 2026-04-11 23:47:27,555 | INFO     | preparing for final server update for job 7087146148 in state='finished'
[2026-04-12 01:48:17] 2026-04-11 23:47:27,555 | INFO     | reading metadata from: /tmp/job_11491344/atlas/pilot/slots/0/PanDA_Pilot-7087146148/jobReport.json
[2026-04-12 01:48:17] 2026-04-11 23:47:27,556 | INFO     | added worker_node to metadata from /tmp/job_11491344/atlas/pilot/slots/0/workernode_map.json
[2026-04-12 01:48:17] 2026-04-11 23:47:27,556 | INFO     | this job has now completed (state=finished)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,556 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,556 | INFO     | log transfer has been attempted: DONE
[2026-04-12 01:48:17] 2026-04-11 23:47:27,556 | INFO     | job 7087146148 has finished - writing final server update
[2026-04-12 01:48:17] 2026-04-11 23:47:27,557 | INFO     | total number of processed events: 400 (read)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,573 | INFO     | using path: /tmp/job_11491344/atlas/pilot/slots/0/PanDA_Pilot-7087146148/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,573 | INFO     | extracted standard info from prmon json
[2026-04-12 01:48:17] 2026-04-11 23:47:27,574 | INFO     | extracted standard memory fields from prmon json
[2026-04-12 01:48:17] 2026-04-11 23:47:27,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-12 01:48:17] 2026-04-11 23:47:27,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-12 01:48:17] 2026-04-11 23:47:27,574 | INFO     | fitting pss+swap vs Time
[2026-04-12 01:48:17] 2026-04-11 23:47:27,574 | INFO     | sum of square deviations: 21358540.0
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | sum of deviations: -30526901.0
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | mean x (centered): 0.0
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | mean y: 2531699.3170731706
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | intersect: 2531699.3170731706
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | chi2: 0.001835623557674169
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | current memory leak: -1.43 B/s (using 41 data points, chi2=0.00)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | could have reported an average CPU frequency of 2893 MHz (5 samples)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | ..............................
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | . Timing measurements:
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | . get job = 0 s
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | . initial setup = 2 s
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | . payload setup = 3 s
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | . stage-in = 0 s
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | . payload execution = 2880 s
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | . stage-out = 0 s
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | . log creation = 0 s
[2026-04-12 01:48:17] 2026-04-11 23:47:27,575 | INFO     | ..............................
[2026-04-12 01:48:17] 2026-04-11 23:47:27,621 | INFO     | 
[2026-04-12 01:48:17] 2026-04-11 23:47:27,621 | INFO     | job summary report
[2026-04-12 01:48:17] 2026-04-11 23:47:27,621 | INFO     | --------------------------------------------------
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | PanDA job id: 7087146148
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | task id: 49263191
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | errors: (none)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | pilot state: finished 
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | transexitcode: 0
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | exeerrorcode: 0
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | exeerrordiag: 
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | exitcode: 0
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | exitmsg: OK
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | cpuconsumptiontime: 21195 s
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | nevents: 400
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | neventsw: 0
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | pid: 26490
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | pgrp: 26490
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | corecount: 8
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | event service: False
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | sizes: {0: 2281598, 11: 2281598, 2887: 2307104, 2888: 2316132, 2890: 2316414}
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | --------------------------------------------------
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | 
[2026-04-12 01:48:17] 2026-04-11 23:47:27,622 | INFO     | executing command: ls -lF /tmp/job_11491344/atlas/pilot/slots/0
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | job 7087146148 has completed (purged errors)
[2026-04-12 01:48:17] 2026-04-11 23:47:27,632 | INFO     | overall cleanup function is called
[2026-04-12 01:48:17] 2026-04-11 23:47:28,638 | INFO     | --- collectZombieJob: --- 10, [26490]
[2026-04-12 01:48:17] 2026-04-11 23:47:28,638 | INFO     | zombie collector waiting for pid 26490
[2026-04-12 01:48:17] 2026-04-11 23:47:28,638 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 01:48:17] 2026-04-11 23:47:28,638 | INFO     | collected zombie processes
[2026-04-12 01:48:17] 2026-04-11 23:47:28,638 | INFO     | will attempt to kill all subprocesses of pid=26490
[2026-04-12 01:48:17] 2026-04-11 23:47:28,731 | INFO     | process IDs to be killed: [26490] (in reverse order)
[2026-04-12 01:48:17] 2026-04-11 23:47:28,762 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 01:48:17] 2026-04-11 23:47:28,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 01:48:17] 2026-04-11 23:47:28,766 | INFO     | did not find any defunct processes belonging to 26490
[2026-04-12 01:48:17] 2026-04-11 23:47:28,769 | INFO     | did not find any defunct processes belonging to 26490
[2026-04-12 01:48:17] 2026-04-11 23:47:28,769 | INFO     | Ready for new job
[2026-04-12 01:48:17] 2026-04-11 23:47:28,770 | INFO     | **************************************
[2026-04-12 01:48:17] 2026-04-11 23:47:28,770 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 01:48:17] 2026-04-11 23:47:28,770 | INFO     | **************************************
[2026-04-12 01:48:17] 2026-04-11 23:47:28,770 | INFO     | 
[2026-04-12 01:48:17] 2026-04-11 23:47:28,783 | INFO     | architecture information:
[2026-04-12 01:48:17] 2026-04-11 23:47:28,783 | INFO     | executing command: cat /etc/os-release
[2026-04-12 01:48:17] 2026-04-11 23:47:28,789 | INFO     | cat /etc/os-release:
[2026-04-12 01:48:17] NAME="CentOS Linux"
[2026-04-12 01:48:17] VERSION="7 (Core)"
[2026-04-12 01:48:17] ID="centos"
[2026-04-12 01:48:17] ID_LIKE="rhel fedora"
[2026-04-12 01:48:17] VERSION_ID="7"
[2026-04-12 01:48:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 01:48:17] ANSI_COLOR="0;31"
[2026-04-12 01:48:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 01:48:17] HOME_URL="https://www.centos.org/"
[2026-04-12 01:48:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 01:48:17] 
[2026-04-12 01:48:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 01:48:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 01:48:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 01:48:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 01:48:17] 
[2026-04-12 01:48:17] 2026-04-11 23:47:28,789 | INFO     | **************************************
[2026-04-12 01:48:17] 2026-04-11 23:47:29,292 | INFO     | executing command: df -mP /tmp/job_11491344/atlas/pilot/slots/0
[2026-04-12 01:48:17] 2026-04-11 23:47:29,297 | INFO     | sufficient remaining disk space (226390704128 B)
[2026-04-12 01:48:17] 2026-04-11 23:47:29,298 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 01:48:17] 2026-04-11 23:47:29,298 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 01:48:17] 2026-04-11 23:47:29,298 | INFO     | update_server=False
[2026-04-12 01:48:17] 2026-04-11 23:47:29,298 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 01:48:17] 2026-04-11 23:47:29,298 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 01:48:17] 2026-04-11 23:47:29,298 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 01:48:17] 2026-04-11 23:47:29,995 | INFO     | all job control threads have been joined
[2026-04-12 01:48:17] 2026-04-11 23:47:30,284 | INFO     | all payload control threads have been joined
[2026-04-12 01:48:17] 2026-04-11 23:47:30,303 | INFO     | [job] retrieve thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:30,303 | INFO     | [job] queue monitor thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:30,362 | INFO     | all data control threads have been joined
[2026-04-12 01:48:17] 2026-04-11 23:47:30,614 | INFO     | [payload] validate_post thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:30,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 01:48:17] 2026-04-11 23:47:30,773 | INFO     | [job] validate thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:31,000 | INFO     | [job] control thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:31,098 | WARNING  | process 26490 can no longer be monitored (due to stat problems) - aborting
[2026-04-12 01:48:17] 2026-04-11 23:47:31,107 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:31,175 | INFO     | using path: /tmp/job_11491344/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 01:48:17] 2026-04-11 23:47:31,175 | INFO     | using path: /tmp/job_11491344/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 01:48:17] 2026-04-11 23:47:31,176 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-12 01:48:17] 2026-04-11 23:47:31,176 | WARNING  | maxPSS not found in memory monitor output
[2026-04-12 01:48:17] 2026-04-11 23:47:31,176 | INFO     | skipping file size check of payload stdout file (/tmp/job_11491344/atlas/pilot/slots/0/PanDA_Pilot-7087146148/payload.stdout) since it has not been created yet
[2026-04-12 01:48:17] 2026-04-11 23:47:31,176 | INFO     | executing command: df -mP /tmp/job_11491344/atlas/pilot/slots/0
[2026-04-12 01:48:17] 2026-04-11 23:47:31,182 | INFO     | sufficient remaining disk space (226390704128 B)
[2026-04-12 01:48:17] 2026-04-11 23:47:31,182 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-12 01:48:17] 2026-04-11 23:47:31,182 | INFO     | output file size check: skipping output file /tmp/job_11491344/atlas/pilot/slots/0/PanDA_Pilot-7087146148/HITS.49263191._050142.pool.root.1 since it does not exist
[2026-04-12 01:48:17] 2026-04-11 23:47:31,183 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:31,210 | INFO     | [data] copytool_in thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:31,247 | INFO     | [payload] failed_post thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:31,274 | INFO     | number of running child processes to parent process 26490: 1
[2026-04-12 01:48:17] 2026-04-11 23:47:31,274 | INFO     | maximum number of monitored processes: 6
[2026-04-12 01:48:17] 2026-04-11 23:47:31,274 | INFO     | aborting job monitoring since job object (job id=7087146148) has expired
[2026-04-12 01:48:17] 2026-04-11 23:47:31,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 01:48:17] 2026-04-11 23:47:31,274 | INFO     | will abort loop
[2026-04-12 01:48:17] 2026-04-11 23:47:31,289 | INFO     | [payload] control thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:31,367 | INFO     | [data] control thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:31,770 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:32,279 | INFO     | [job] job monitor thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:32,737 | INFO     | [data] copytool_out thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:33,298 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:47:40,077 | INFO     | job.realtimelogging is not enabled
[2026-04-12 01:48:17] 2026-04-11 23:47:41,082 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 01:48:17] 2026-04-11 23:48:00,275 | INFO     | PID=21965 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-12 01:48:17] 2026-04-11 23:48:00,275 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 01:48:17] 2026-04-11 23:48:00,275 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 01:48:17] 2026-04-11 23:48:00,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 01:48:17] 2026-04-11 23:48:10,815 | INFO     | [monitor] cgroup control has ended
[2026-04-12 01:48:17] 2026-04-11 23:48:12,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-04-12 01:48:17] 2026-04-11 23:48:12,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 01:48:17] 2026-04-11 23:48:12,334 | INFO     | [monitor] control thread has ended
[2026-04-12 01:48:17] 2026-04-11 23:48:17,276 | INFO     | all workflow threads have been joined
[2026-04-12 01:48:17] 2026-04-11 23:48:17,276 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 01:48:17] 2026-04-11 23:48:17,276 | INFO     | traces error code: 0
[2026-04-12 01:48:17] 2026-04-11 23:48:17,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 01:48:17] 2026-04-11 23:48:17,327 [wrapper] ==== pilot stdout END ====
[2026-04-12 01:48:17] 2026-04-11 23:48:17,329 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 01:48:17] 2026-04-11 23:48:17,330 [wrapper] pilotpid: 21965
[2026-04-12 01:48:17] 2026-04-11 23:48:17,331 [wrapper] Pilot exit status: 0
[2026-04-12 01:48:17] 2026-04-11 23:48:17,335 [wrapper] pandaids: 7087146148
[2026-04-12 01:48:17] 2026-04-11 23:48:17,356 [wrapper] cleanup supervisor_pilot 10501 21966
[2026-04-12 01:48:17] 2026-04-11 23:48:17,357 [wrapper] Test setup, not cleaning
[2026-04-12 01:48:17] 2026-04-11 23:48:17,358 [wrapper] apfmon messages muted
[2026-04-12 01:48:17] 2026-04-11 23:48:17,359 [wrapper] ==== wrapper stdout END ====
[2026-04-12 01:48:17] 2026-04-11 23:48:17,360 [wrapper] ==== wrapper stderr END ====
[2026-04-12 01:48:17]  *** Error codes and diagnostics ***
[2026-04-12 01:48:17]     "exeErrorCode": 0,
[2026-04-12 01:48:17]     "pilotErrorCode": 0,
[2026-04-12 01:48:17]  *** Listing of results directory ***
[2026-04-12 01:48:17] total 424448
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user    644190 Apr 11 20:00 pilot3.tar.gz
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      5094 Apr 11 20:00 queuedata.json
[2026-04-12 01:48:17] -rwx------ 1 mf493845 unix-user     36322 Apr 11 20:01 runpilot2-wrapper.sh
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user       100 Apr 12 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 01:48:17] -rwxr-xr-x 1 mf493845 unix-user      7986 Apr 12 00:01 run_atlas
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user       105 Apr 12 00:01 job.xml
[2026-04-12 01:48:17] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 12 00:58 start_atlas.sh
[2026-04-12 01:48:17] drwxrwx--x 2 mf493845 unix-user       100 Apr 12 00:58 shared
[2026-04-12 01:48:17] -rw-r--r-- 2 mf493845 unix-user    656931 Apr 12 00:58 input.tar.gz
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      6305 Apr 12 00:58 init_data.xml
[2026-04-12 01:48:17] -rw-r--r-- 2 mf493845 unix-user 226089688 Apr 12 00:58 EVNT.49263189._001184.pool.root.1
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user         0 Apr 12 00:58 boinc_setup_complete
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      8192 Apr 12 00:58 boinc_mmap_file
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user         0 Apr 12 00:58 boinc_lockfile
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      2578 Apr 12 00:58 pandaJob.out
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user    997799 Apr 12 00:59 agis_schedconf.cvmfs.json
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user   1511579 Apr 12 00:59 agis_ddmendpoints.agis.ALL.json
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user       420 Apr 12 00:59 workernode_map.json
[2026-04-12 01:48:17] drwx------ 5 mf493845 unix-user       480 Apr 12 00:59 pilot3
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user 203293432 Apr 12 01:47 HITS.49263191._050142.pool.root.1
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      1019 Apr 12 01:47 memory_monitor_summary.json
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user    288800 Apr 12 01:47 log.49263191._050142.job.log.tgz.1
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      6336 Apr 12 01:47 heartbeat_new.json
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      6226 Apr 12 01:47 heartbeat.json
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user        95 Apr 12 01:48 pilot_heartbeat.json
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      6384 Apr 12 01:48 pilotlog.txt
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user    322621 Apr 12 01:48 log.49263191._050142.job.log.1
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user       357 Apr 12 01:48 output.list
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user       410 Apr 12 01:48 runtime_log
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user    624640 Apr 12 01:48 result.tar.gz
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user      8841 Apr 12 01:48 runtime_log.err
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user       641 Apr 12 01:48 8c58cdf76a09.diag
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user     22565 Apr 12 01:48 stderr.txt
[2026-04-12 01:48:17] HITS file was successfully produced:
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user 203293432 Apr 12 01:47 shared/HITS.pool.root.1
[2026-04-12 01:48:17]  *** Contents of shared directory: ***
[2026-04-12 01:48:17] total 420596
[2026-04-12 01:48:17] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 12 00:58 start_atlas.sh
[2026-04-12 01:48:17] -rw-r--r-- 2 mf493845 unix-user    656931 Apr 12 00:58 input.tar.gz
[2026-04-12 01:48:17] -rw-r--r-- 2 mf493845 unix-user 226089688 Apr 12 00:58 ATLAS.root_0
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user 203293432 Apr 12 01:47 HITS.pool.root.1
[2026-04-12 01:48:17] -rw------- 1 mf493845 unix-user    624640 Apr 12 01:48 result.tar.gz
01:48:19 (18115): run_atlas exited; CPU time 21235.691050
01:48:19 (18115): called boinc_finish(0)

</stderr_txt>
]]>

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