Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:48:30 (3968037): wrapper (7.7.26015): starting
17:48:30 (3968037): wrapper: running run_atlas (--nthreads 12)
[2026-04-11 17:48:30] Arguments: --nthreads 12
[2026-04-11 17:48:30] Threads: 12
[2026-04-11 17:48:30] Checking for CVMFS
[2026-04-11 17:48:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 17:48:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 17:48:32] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 17:48:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 17:48:32] 2.13.3.0 3396681 2010 54940 158349 1 50 3901188 4097025 923 130560 0 1394330 99.987 82173 19208 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2026-04-11 17:48:32] CVMFS is ok
[2026-04-11 17:48:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 17:48:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 17:48:32] Further information can be found at the LHC@home message board.
[2026-04-11 17:48:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 17:48:32] Checking for apptainer binary...
[2026-04-11 17:48:32] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2026-04-11 17:48:32] apptainer is not installed, using version from CVMFS
[2026-04-11 17:48:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 17:48:33] pckelar2.cern.ch
[2026-04-11 17:48:33] apptainer works
[2026-04-11 17:48:33] Set ATHENA_PROC_NUMBER=12
[2026-04-11 17:48:33] Set ATHENA_CORE_NUMBER=12
[2026-04-11 17:48:33] Starting ATLAS job with PandaID=7085003687
[2026-04-11 17:48:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 20:29:59]  *** The last 200 lines of the pilot log: ***
[2026-04-11 20:29:59] 2026-04-11 18:29:27,070 | INFO     | preparing for final server update for job 7085003687 in state='finished'
[2026-04-11 20:29:59] 2026-04-11 18:29:27,071 | INFO     | reading metadata from: /var/lib/boinc/slots/3/PanDA_Pilot-7085003687/jobReport.json
[2026-04-11 20:29:59] 2026-04-11 18:29:27,075 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/3/workernode_map.json
[2026-04-11 20:29:59] 2026-04-11 18:29:27,076 | INFO     | this job has now completed (state=finished)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,076 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,076 | INFO     | log transfer has been attempted: DONE
[2026-04-11 20:29:59] 2026-04-11 18:29:27,077 | INFO     | job 7085003687 has finished - writing final server update
[2026-04-11 20:29:59] 2026-04-11 18:29:27,077 | INFO     | total number of processed events: 400 (read)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,084 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-7085003687/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,085 | INFO     | extracted standard info from prmon json
[2026-04-11 20:29:59] 2026-04-11 18:29:27,085 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 20:29:59] 2026-04-11 18:29:27,086 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 20:29:59] 2026-04-11 18:29:27,086 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 20:29:59] 2026-04-11 18:29:27,092 | INFO     | fitting pss+swap vs Time
[2026-04-11 20:29:59] 2026-04-11 18:29:27,093 | INFO     | sum of square deviations: 1199940638.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,094 | INFO     | sum of deviations: 12624560854.000004
[2026-04-11 20:29:59] 2026-04-11 18:29:27,094 | INFO     | mean x (centered): 0.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,094 | INFO     | mean y: 2716902.560509554
[2026-04-11 20:29:59] 2026-04-11 18:29:27,094 | INFO     | intersect: 2716902.560509554
[2026-04-11 20:29:59] 2026-04-11 18:29:27,095 | INFO     | chi2: 1.824665801627507
[2026-04-11 20:29:59] 2026-04-11 18:29:27,095 | INFO     | sum of square deviations: 1088905998.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,097 | INFO     | sum of deviations: 12053791570.5
[2026-04-11 20:29:59] 2026-04-11 18:29:27,097 | INFO     | mean x (centered): 0.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,097 | INFO     | mean y: 2716118.375
[2026-04-11 20:29:59] 2026-04-11 18:29:27,097 | INFO     | intersect: 2716118.375
[2026-04-11 20:29:59] 2026-04-11 18:29:27,098 | INFO     | chi2: 1.8263018444929988
[2026-04-11 20:29:59] 2026-04-11 18:29:27,098 | INFO     | current chi2=1.8263018444929988 (change=-0.08966260364130946 %)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,098 | INFO     | right removable region: 151
[2026-04-11 20:29:59] 2026-04-11 18:29:27,098 | INFO     | sum of square deviations: 1088905998.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,099 | INFO     | sum of deviations: -15623440901.999998
[2026-04-11 20:29:59] 2026-04-11 18:29:27,100 | INFO     | mean x (centered): 0.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,100 | INFO     | mean y: 2755203.802631579
[2026-04-11 20:29:59] 2026-04-11 18:29:27,100 | INFO     | intersect: 2755203.802631579
[2026-04-11 20:29:59] 2026-04-11 18:29:27,100 | INFO     | chi2: 0.20561323465265174
[2026-04-11 20:29:59] 2026-04-11 18:29:27,101 | INFO     | current chi2=0.20561323465265174 (change=88.73145786646215 %)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,101 | INFO     | sum of square deviations: 984941258.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,102 | INFO     | sum of deviations: -17948882841.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,102 | INFO     | mean x (centered): 0.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,103 | INFO     | mean y: 2758538.1428571427
[2026-04-11 20:29:59] 2026-04-11 18:29:27,103 | INFO     | intersect: 2758538.1428571427
[2026-04-11 20:29:59] 2026-04-11 18:29:27,103 | INFO     | chi2: 0.16616925755400067
[2026-04-11 20:29:59] 2026-04-11 18:29:27,103 | INFO     | current chi2=0.16616925755400067 (change=19.183578900105775 %)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,103 | INFO     | left removable region: 10
[2026-04-11 20:29:59] 2026-04-11 18:29:27,104 | INFO     | sum of square deviations: 869188390.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,105 | INFO     | sum of deviations: -17470172897.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,105 | INFO     | mean x (centered): 0.0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,105 | INFO     | mean y: 2759295.3829787234
[2026-04-11 20:29:59] 2026-04-11 18:29:27,105 | INFO     | intersect: 2759295.3829787234
[2026-04-11 20:29:59] 2026-04-11 18:29:27,106 | INFO     | chi2: 0.16249051841827103
[2026-04-11 20:29:59] 2026-04-11 18:29:27,106 | INFO     | current memory leak: -20.10 B/s (using 141 data points, chi2=0.16)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,107 | INFO     | could have reported an average CPU frequency of 2800 MHz (9 samples)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,107 | INFO     | ..............................
[2026-04-11 20:29:59] 2026-04-11 18:29:27,107 | INFO     | . Timing measurements:
[2026-04-11 20:29:59] 2026-04-11 18:29:27,107 | INFO     | . get job = 0 s
[2026-04-11 20:29:59] 2026-04-11 18:29:27,108 | INFO     | . initial setup = 14 s
[2026-04-11 20:29:59] 2026-04-11 18:29:27,108 | INFO     | . payload setup = 24 s
[2026-04-11 20:29:59] 2026-04-11 18:29:27,108 | INFO     | . stage-in = 0 s
[2026-04-11 20:29:59] 2026-04-11 18:29:27,108 | INFO     | . payload execution = 9567 s
[2026-04-11 20:29:59] 2026-04-11 18:29:27,108 | INFO     | . stage-out = 1 s
[2026-04-11 20:29:59] 2026-04-11 18:29:27,108 | INFO     | . log creation = 0 s
[2026-04-11 20:29:59] 2026-04-11 18:29:27,108 | INFO     | ..............................
[2026-04-11 20:29:59] 2026-04-11 18:29:27,401 | INFO     | 
[2026-04-11 20:29:59] 2026-04-11 18:29:27,402 | INFO     | job summary report
[2026-04-11 20:29:59] 2026-04-11 18:29:27,403 | INFO     | --------------------------------------------------
[2026-04-11 20:29:59] 2026-04-11 18:29:27,403 | INFO     | PanDA job id: 7085003687
[2026-04-11 20:29:59] 2026-04-11 18:29:27,403 | INFO     | task id: 49499847
[2026-04-11 20:29:59] 2026-04-11 18:29:27,403 | INFO     | errors: (none)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,403 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 20:29:59] 2026-04-11 18:29:27,404 | INFO     | pilot state: finished 
[2026-04-11 20:29:59] 2026-04-11 18:29:27,404 | INFO     | transexitcode: 0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,404 | INFO     | exeerrorcode: 0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,404 | INFO     | exeerrordiag: 
[2026-04-11 20:29:59] 2026-04-11 18:29:27,404 | INFO     | exitcode: 0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,404 | INFO     | exitmsg: OK
[2026-04-11 20:29:59] 2026-04-11 18:29:27,405 | INFO     | cpuconsumptiontime: 102261 s
[2026-04-11 20:29:59] 2026-04-11 18:29:27,405 | INFO     | nevents: 400
[2026-04-11 20:29:59] 2026-04-11 18:29:27,405 | INFO     | neventsw: 0
[2026-04-11 20:29:59] 2026-04-11 18:29:27,405 | INFO     | pid: 3977584
[2026-04-11 20:29:59] 2026-04-11 18:29:27,405 | INFO     | pgrp: 3977584
[2026-04-11 20:29:59] 2026-04-11 18:29:27,405 | INFO     | corecount: 12
[2026-04-11 20:29:59] 2026-04-11 18:29:27,406 | INFO     | event service: False
[2026-04-11 20:29:59] 2026-04-11 18:29:27,406 | INFO     | sizes: {0: 2279696, 1: 2280097, 2: 2281553, 13: 2281553, 9592: 2309923, 9594: 2318921, 9596: 2319105, 9598: 2319363}
[2026-04-11 20:29:59] 2026-04-11 18:29:27,406 | INFO     | --------------------------------------------------
[2026-04-11 20:29:59] 2026-04-11 18:29:27,406 | INFO     | 
[2026-04-11 20:29:59] 2026-04-11 18:29:27,406 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-04-11 20:29:59] 2026-04-11 18:29:27,437 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,437 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,437 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,437 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,438 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,439 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,439 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,439 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 20:29:59] 2026-04-11 18:29:27,439 | INFO     | job 7085003687 has completed (purged errors)
[2026-04-11 20:29:59] 2026-04-11 18:29:27,439 | INFO     | overall cleanup function is called
[2026-04-11 20:29:59] 2026-04-11 18:29:28,226 | WARNING  | process 3977584 can no longer be monitored (due to stat problems) - aborting
[2026-04-11 20:29:59] 2026-04-11 18:29:28,417 | INFO     | using path: /var/lib/boinc/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 20:29:59] 2026-04-11 18:29:28,445 | INFO     | --- collectZombieJob: --- 10, [3977584]
[2026-04-11 20:29:59] 2026-04-11 18:29:28,445 | INFO     | zombie collector waiting for pid 3977584
[2026-04-11 20:29:59] 2026-04-11 18:29:28,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 20:29:59] 2026-04-11 18:29:28,446 | INFO     | collected zombie processes
[2026-04-11 20:29:59] 2026-04-11 18:29:28,446 | INFO     | will attempt to kill all subprocesses of pid=3977584
[2026-04-11 20:29:59] 2026-04-11 18:29:28,841 | INFO     | number of running child processes to parent process 3977584: 1
[2026-04-11 20:29:59] 2026-04-11 18:29:28,842 | INFO     | maximum number of monitored processes: 6
[2026-04-11 20:29:59] 2026-04-11 18:29:28,843 | INFO     | aborting job monitoring since job object (job id=7085003687) has expired
[2026-04-11 20:29:59] 2026-04-11 18:29:28,856 | INFO     | process IDs to be killed: [3977584] (in reverse order)
[2026-04-11 20:29:59] 2026-04-11 18:29:28,949 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 20:29:59] 2026-04-11 18:29:28,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 20:29:59] 2026-04-11 18:29:28,956 | INFO     | did not find any defunct processes belonging to 3977584
[2026-04-11 20:29:59] 2026-04-11 18:29:28,963 | INFO     | did not find any defunct processes belonging to 3977584
[2026-04-11 20:29:59] 2026-04-11 18:29:28,963 | INFO     | Ready for new job
[2026-04-11 20:29:59] 2026-04-11 18:29:28,965 | INFO     | **************************************
[2026-04-11 20:29:59] 2026-04-11 18:29:28,965 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 20:29:59] 2026-04-11 18:29:28,965 | INFO     | **************************************
[2026-04-11 20:29:59] 2026-04-11 18:29:28,965 | INFO     | 
[2026-04-11 20:29:59] 2026-04-11 18:29:28,966 | INFO     | architecture information:
[2026-04-11 20:29:59] 2026-04-11 18:29:28,967 | INFO     | executing command: cat /etc/os-release
[2026-04-11 20:29:59] 2026-04-11 18:29:28,983 | INFO     | cat /etc/os-release:
[2026-04-11 20:29:59] NAME="CentOS Linux"
[2026-04-11 20:29:59] VERSION="7 (Core)"
[2026-04-11 20:29:59] ID="centos"
[2026-04-11 20:29:59] ID_LIKE="rhel fedora"
[2026-04-11 20:29:59] VERSION_ID="7"
[2026-04-11 20:29:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 20:29:59] ANSI_COLOR="0;31"
[2026-04-11 20:29:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 20:29:59] HOME_URL="https://www.centos.org/"
[2026-04-11 20:29:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 20:29:59] 
[2026-04-11 20:29:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 20:29:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 20:29:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 20:29:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 20:29:59] 
[2026-04-11 20:29:59] 2026-04-11 18:29:28,984 | INFO     | **************************************
[2026-04-11 20:29:59] 2026-04-11 18:29:29,487 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-04-11 20:29:59] 2026-04-11 18:29:29,512 | INFO     | sufficient remaining disk space (229161041920 B)
[2026-04-11 20:29:59] 2026-04-11 18:29:29,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 20:29:59] 2026-04-11 18:29:29,514 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 20:29:59] 2026-04-11 18:29:29,514 | INFO     | update_server=False
[2026-04-11 20:29:59] 2026-04-11 18:29:29,514 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 20:29:59] 2026-04-11 18:29:29,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 20:29:59] 2026-04-11 18:29:29,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 20:29:59] 2026-04-11 18:29:29,516 | INFO     | will abort loop
[2026-04-11 20:29:59] 2026-04-11 18:29:29,737 | INFO     | all data control threads have been joined
[2026-04-11 20:29:59] 2026-04-11 18:29:29,948 | INFO     | all job control threads have been joined
[2026-04-11 20:29:59] 2026-04-11 18:29:30,427 | INFO     | all payload control threads have been joined
[2026-04-11 20:29:59] 2026-04-11 18:29:30,520 | INFO     | [job] retrieve thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:30,521 | INFO     | [job] job monitor thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:30,559 | INFO     | [payload] validate_post thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:30,695 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:30,741 | INFO     | [data] control thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:30,954 | INFO     | [job] control thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:30,966 | INFO     | [data] copytool_in thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:31,374 | INFO     | [payload] failed_post thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:31,396 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:31,432 | INFO     | [payload] control thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:31,521 | INFO     | [data] copytool_out thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:31,541 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 20:29:59] 2026-04-11 18:29:31,587 | INFO     | [monitor] cgroup control has ended
[2026-04-11 20:29:59] 2026-04-11 18:29:31,698 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:31,750 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:31,877 | INFO     | [job] validate thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:32,284 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 20:29:59] 2026-04-11 18:29:33,290 | INFO     | [job] queue monitor thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:35,549 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 20:29:59] 2026-04-11 18:29:36,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140608501274432)>', '<ExcThread(monitor, started 140608102463232)>']
[2026-04-11 20:29:59] 2026-04-11 18:29:41,602 | INFO     | all workflow threads have been joined
[2026-04-11 20:29:59] 2026-04-11 18:29:41,603 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 20:29:59] 2026-04-11 18:29:41,603 | INFO     | traces error code: 0
[2026-04-11 20:29:59] 2026-04-11 18:29:41,603 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 20:29:59] 2026-04-11 18:29:59,492 | INFO     | PID=3972179 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 20:29:59] 2026-04-11 18:29:59,493 | INFO     | .. there are 2 such processes running
[2026-04-11 20:29:59] 2026-04-11 18:29:59,495 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 20:29:59] 2026-04-11 18:29:59,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 20:29:59] 2026-04-11 18:29:59,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 20:29:59] 2026-04-11 18:29:59,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 20:29:59] 2026-04-11 18:29:59,496 | INFO     | [monitor] control thread has ended
[2026-04-11 20:29:59] 2026-04-11 18:29:59,756 [wrapper] ==== pilot stdout END ====
[2026-04-11 20:29:59] 2026-04-11 18:29:59,759 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 20:29:59] 2026-04-11 18:29:59,763 [wrapper] pilotpid: 3972179
[2026-04-11 20:29:59] 2026-04-11 18:29:59,767 [wrapper] Pilot exit status: 0
[2026-04-11 20:29:59] 2026-04-11 18:29:59,781 [wrapper] pandaids: 7085003687
[2026-04-11 20:29:59] 2026-04-11 18:29:59,828 [wrapper] cleanup supervisor_pilot 4016994 3972180
[2026-04-11 20:29:59] 2026-04-11 18:29:59,831 [wrapper] Test setup, not cleaning
[2026-04-11 20:29:59] 2026-04-11 18:29:59,835 [wrapper] apfmon messages muted
[2026-04-11 20:29:59] 2026-04-11 18:29:59,840 [wrapper] ==== wrapper stdout END ====
[2026-04-11 20:29:59] 2026-04-11 18:29:59,845 [wrapper] ==== wrapper stderr END ====
[2026-04-11 20:29:59]  *** Error codes and diagnostics ***
[2026-04-11 20:29:59]     "exeErrorCode": 0,
[2026-04-11 20:29:59]     "pilotErrorCode": 0,
[2026-04-11 20:29:59]  *** Listing of results directory ***
[2026-04-11 20:29:59] total 488856
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc    644190 Apr 11 14:50 pilot3.tar.gz
[2026-04-11 20:29:59] -rwx------ 1 boinc boinc     36322 Apr 11 15:08 runpilot2-wrapper.sh
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc      5094 Apr 11 15:08 queuedata.json
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc       100 Apr 11 17:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 20:29:59] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 17:48 run_atlas
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc       105 Apr 11 17:48 job.xml
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc      6211 Apr 11 17:48 init_data.xml
[2026-04-11 20:29:59] -rw-r--r-- 2 boinc boinc 295670357 Apr 11 17:48 EVNT.49475091._000016.pool.root.1
[2026-04-11 20:29:59] -rw-r--r-- 2 boinc boinc     15665 Apr 11 17:48 start_atlas.sh
[2026-04-11 20:29:59] drwxrwx--x 2 boinc boinc        68 Apr 11 17:48 shared
[2026-04-11 20:29:59] -rw-r--r-- 2 boinc boinc    656942 Apr 11 17:48 input.tar.gz
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc         0 Apr 11 17:48 boinc_lockfile
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc      2634 Apr 11 17:48 pandaJob.out
[2026-04-11 20:29:59] -rw------- 1 boinc boinc    997828 Apr 11 17:49 agis_schedconf.cvmfs.json
[2026-04-11 20:29:59] -rw------- 1 boinc boinc   1511579 Apr 11 17:49 agis_ddmendpoints.agis.ALL.json
[2026-04-11 20:29:59] -rw------- 1 boinc boinc       437 Apr 11 17:49 workernode_map.json
[2026-04-11 20:29:59] drwx------ 5 boinc boinc      4096 Apr 11 17:49 pilot3
[2026-04-11 20:29:59] -rw------- 1 boinc boinc 198265662 Apr 11 20:28 HITS.49499847._000544.pool.root.1
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc       488 Apr 11 20:29 boinc_task_state.xml
[2026-04-11 20:29:59] -rw------- 1 boinc boinc      1030 Apr 11 20:29 memory_monitor_summary.json
[2026-04-11 20:29:59] -rw------- 1 boinc boinc    400057 Apr 11 20:29 log.49499847._000544.job.log.tgz.1
[2026-04-11 20:29:59] -rw------- 1 boinc boinc      6379 Apr 11 20:29 heartbeat_new.json
[2026-04-11 20:29:59] -rw------- 1 boinc boinc      6270 Apr 11 20:29 heartbeat.json
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc      8192 Apr 11 20:29 boinc_mmap_file
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc        28 Apr 11 20:29 wrapper_checkpoint.txt
[2026-04-11 20:29:59] -rw------- 1 boinc boinc        95 Apr 11 20:29 pilot_heartbeat.json
[2026-04-11 20:29:59] -rw------- 1 boinc boinc       822 Apr 11 20:29 pilotlog.txt
[2026-04-11 20:29:59] -rw------- 1 boinc boinc    901128 Apr 11 20:29 log.49499847._000544.job.log.1
[2026-04-11 20:29:59] -rw------- 1 boinc boinc       357 Apr 11 20:29 output.list
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc       410 Apr 11 20:29 runtime_log
[2026-04-11 20:29:59] -rw------- 1 boinc boinc   1320960 Apr 11 20:29 result.tar.gz
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc      8462 Apr 11 20:29 runtime_log.err
[2026-04-11 20:29:59] -rw------- 1 boinc boinc       662 Apr 11 20:29 47d642496b6d.diag
[2026-04-11 20:29:59] -rw-r--r-- 1 boinc boinc     21352 Apr 11 20:29 stderr.txt
[2026-04-11 20:29:59] HITS file was successfully produced:
[2026-04-11 20:29:59] -rw------- 1 boinc boinc 198265662 Apr 11 20:28 shared/HITS.pool.root.1
[2026-04-11 20:29:59]  *** Contents of shared directory: ***
[2026-04-11 20:29:59] total 484316
[2026-04-11 20:29:59] -rw-r--r-- 2 boinc boinc 295670357 Apr 11 17:48 ATLAS.root_0
[2026-04-11 20:29:59] -rw-r--r-- 2 boinc boinc     15665 Apr 11 17:48 start_atlas.sh
[2026-04-11 20:29:59] -rw-r--r-- 2 boinc boinc    656942 Apr 11 17:48 input.tar.gz
[2026-04-11 20:29:59] -rw------- 1 boinc boinc 198265662 Apr 11 20:28 HITS.pool.root.1
[2026-04-11 20:29:59] -rw------- 1 boinc boinc   1320960 Apr 11 20:29 result.tar.gz
20:30:01 (3968037): run_atlas exited; CPU time 102433.512869
20:30:01 (3968037): called boinc_finish(0)

</stderr_txt>
]]>

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