Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:24:23 (25129): wrapper (7.7.26015): starting
17:24:23 (25129): wrapper: running run_atlas (--nthreads 8)
[2026-04-11 17:24:23] Arguments: --nthreads 8
[2026-04-11 17:24:23] Threads: 8
[2026-04-11 17:24:23] Checking for CVMFS
[2026-04-11 17:24:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 17:24:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 17:24:23] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 17:24:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 17:24:23] 2.11.0.0 6766 4321 56848 158349 3 188 2626082 4096001 873 130560 0 222711 97.042 817077 319 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-04-11 17:24:23] CVMFS is ok
[2026-04-11 17:24:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 17:24:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 17:24:23] Further information can be found at the LHC@home message board.
[2026-04-11 17:24:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 17:24:23] Checking for apptainer binary...
[2026-04-11 17:24:23] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-04-11 17:24:23] apptainer is not installed, using version from CVMFS
[2026-04-11 17:24:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 17:24:23] WARNING: Environment variable TMPDIR already has value [/tmp/job_11489520/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node426
[2026-04-11 17:24:23] apptainer works
[2026-04-11 17:24:23] Set ATHENA_PROC_NUMBER=8
[2026-04-11 17:24:23] Set ATHENA_CORE_NUMBER=8
[2026-04-11 17:24:23] Starting ATLAS job with PandaID=7083378656
[2026-04-11 17:24:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11489520/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 18:18:54]  *** The last 200 lines of the pilot log: ***
[2026-04-11 18:18:54]  domain=
[2026-04-11 18:18:54]  filesize=287270
[2026-04-11 18:18:54]  filetype=log
[2026-04-11 18:18:54]  guid=e57a4c88-1c1a-4a5c-a3c1-4ff7897dbcf6
[2026-04-11 18:18:54]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-11 18:18:54]  is_altstaged=None
[2026-04-11 18:18:54]  is_tar=False
[2026-04-11 18:18:54]  lfn=log.49263200._034003.job.log.tgz.1
[2026-04-11 18:18:54]  mtime=0
[2026-04-11 18:18:54]  protocol_id=None
[2026-04-11 18:18:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-11 18:18:54]  replicas=None
[2026-04-11 18:18:54]  scope=mc23_13p6TeV
[2026-04-11 18:18:54]  status=None
[2026-04-11 18:18:54]  status_code=0
[2026-04-11 18:18:54]  storage_token=
[2026-04-11 18:18:54]  surl=/tmp/job_11489520/atlas/pilot/slots/0/PanDA_Pilot-7083378656/log.49263200._034003.job.log.tgz.1
[2026-04-11 18:18:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/be/log.49263200._034003.job.log.tgz.1
[2026-04-11 18:18:54]  workdir=None
[2026-04-11 18:18:54] ]
[2026-04-11 18:18:54] 2026-04-11 16:18:17,571 | INFO     | transferring file log.49263200._034003.job.log.tgz.1 from /tmp/job_11489520/atlas/pilot/slots/0/PanDA_Pilot-7083378656/log.49263200._034003.job.log.tgz.1 to /tmp/j
[2026-04-11 18:18:54] 2026-04-11 16:18:17,571 | INFO     | executing command: /usr/bin/env mv /tmp/job_11489520/atlas/pilot/slots/0/PanDA_Pilot-7083378656/log.49263200._034003.job.log.tgz.1 /tmp/job_11489520/atlas/pilot/sl
[2026-04-11 18:18:54] 2026-04-11 16:18:17,580 | INFO     | adding to output.list: log.49263200._034003.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/be/log.49263200._034003.job.log.tg
[2026-04-11 18:18:54] 2026-04-11 16:18:17,580 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-11 18:18:54] 2026-04-11 16:18:17,580 | INFO     | summary of transferred files:
[2026-04-11 18:18:54] 2026-04-11 16:18:17,580 | INFO     |  -- lfn=log.49263200._034003.job.log.tgz.1, status_code=0, status=transferred
[2026-04-11 18:18:54] 2026-04-11 16:18:17,581 | INFO     | stage-out finished correctly
[2026-04-11 18:18:54] 2026-04-11 16:18:19,293 | WARNING  | process 3625 can no longer be monitored (due to stat problems) - aborting
[2026-04-11 18:18:54] 2026-04-11 16:18:19,293 | INFO     | using path: /tmp/job_11489520/atlas/pilot/slots/0/PanDA_Pilot-7083378656/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 18:18:54] 2026-04-11 16:18:19,442 | INFO     | number of running child processes to parent process 3625: 1
[2026-04-11 18:18:54] 2026-04-11 16:18:19,442 | INFO     | maximum number of monitored processes: 6
[2026-04-11 18:18:54] 2026-04-11 16:18:20,940 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-11 18:18:54] 2026-04-11 16:18:21,515 | INFO     | job 7083378656 has state=finished
[2026-04-11 18:18:54] 2026-04-11 16:18:21,515 | INFO     | preparing for final server update for job 7083378656 in state='finished'
[2026-04-11 18:18:54] 2026-04-11 16:18:21,515 | INFO     | reading metadata from: /tmp/job_11489520/atlas/pilot/slots/0/PanDA_Pilot-7083378656/jobReport.json
[2026-04-11 18:18:54] 2026-04-11 16:18:21,516 | INFO     | added worker_node to metadata from /tmp/job_11489520/atlas/pilot/slots/0/workernode_map.json
[2026-04-11 18:18:54] 2026-04-11 16:18:21,516 | INFO     | this job has now completed (state=finished)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,517 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,517 | INFO     | log transfer has been attempted: DONE
[2026-04-11 18:18:54] 2026-04-11 16:18:21,517 | INFO     | job 7083378656 has finished - writing final server update
[2026-04-11 18:18:54] 2026-04-11 16:18:21,517 | INFO     | total number of processed events: 400 (read)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,539 | INFO     | using path: /tmp/job_11489520/atlas/pilot/slots/0/PanDA_Pilot-7083378656/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,539 | INFO     | extracted standard info from prmon json
[2026-04-11 18:18:54] 2026-04-11 16:18:21,540 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 18:18:54] 2026-04-11 16:18:21,540 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 18:18:54] 2026-04-11 16:18:21,540 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 18:18:54] 2026-04-11 16:18:21,540 | INFO     | fitting pss+swap vs Time
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | sum of square deviations: 30168007.5
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | sum of deviations: 675655306.5000001
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | mean x (centered): 0.0
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | mean y: 2671070.5434782607
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | intersect: 2671070.5434782607
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | chi2: 0.0014439798547117477
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | current memory leak: 22.40 B/s (using 46 data points, chi2=0.00)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | could have reported an average CPU frequency of 2378 MHz (5 samples)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | ..............................
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | . Timing measurements:
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | . get job = 0 s
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | . initial setup = 3 s
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | . payload setup = 4 s
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | . stage-in = 0 s
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | . payload execution = 3207 s
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | . stage-out = 0 s
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | . log creation = 0 s
[2026-04-11 18:18:54] 2026-04-11 16:18:21,541 | INFO     | ..............................
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | 
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | job summary report
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | --------------------------------------------------
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | PanDA job id: 7083378656
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | task id: 49263200
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | errors: (none)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | pilot state: finished 
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | transexitcode: 0
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | exeerrorcode: 0
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | exeerrordiag: 
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | exitcode: 0
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | exitmsg: OK
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | cpuconsumptiontime: 23693 s
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | nevents: 400
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | neventsw: 0
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | pid: 3625
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | pgrp: 3625
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | corecount: 8
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | event service: False
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | sizes: {0: 2281594, 11: 2281594, 3214: 2307203, 3215: 2307202, 3216: 2316286, 3219: 2316696}
[2026-04-11 18:18:54] 2026-04-11 16:18:21,592 | INFO     | --------------------------------------------------
[2026-04-11 18:18:54] 2026-04-11 16:18:21,593 | INFO     | 
[2026-04-11 18:18:54] 2026-04-11 16:18:21,593 | INFO     | executing command: ls -lF /tmp/job_11489520/atlas/pilot/slots/0
[2026-04-11 18:18:54] 2026-04-11 16:18:21,602 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 18:18:54] 2026-04-11 16:18:21,603 | INFO     | job 7083378656 has completed (purged errors)
[2026-04-11 18:18:54] 2026-04-11 16:18:21,604 | INFO     | overall cleanup function is called
[2026-04-11 18:18:54] 2026-04-11 16:18:22,609 | INFO     | --- collectZombieJob: --- 10, [3625]
[2026-04-11 18:18:54] 2026-04-11 16:18:22,609 | INFO     | zombie collector waiting for pid 3625
[2026-04-11 18:18:54] 2026-04-11 16:18:22,610 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 18:18:54] 2026-04-11 16:18:22,610 | INFO     | collected zombie processes
[2026-04-11 18:18:54] 2026-04-11 16:18:22,610 | INFO     | will attempt to kill all subprocesses of pid=3625
[2026-04-11 18:18:54] 2026-04-11 16:18:22,764 | INFO     | process IDs to be killed: [3625] (in reverse order)
[2026-04-11 18:18:54] 2026-04-11 16:18:22,810 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 18:18:54] 2026-04-11 16:18:22,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 18:18:54] 2026-04-11 16:18:22,816 | INFO     | did not find any defunct processes belonging to 3625
[2026-04-11 18:18:54] 2026-04-11 16:18:22,820 | INFO     | did not find any defunct processes belonging to 3625
[2026-04-11 18:18:54] 2026-04-11 16:18:22,821 | INFO     | Ready for new job
[2026-04-11 18:18:54] 2026-04-11 16:18:22,821 | INFO     | **************************************
[2026-04-11 18:18:54] 2026-04-11 16:18:22,821 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 18:18:54] 2026-04-11 16:18:22,821 | INFO     | **************************************
[2026-04-11 18:18:54] 2026-04-11 16:18:22,821 | INFO     | 
[2026-04-11 18:18:54] 2026-04-11 16:18:22,836 | INFO     | architecture information:
[2026-04-11 18:18:54] 2026-04-11 16:18:22,836 | INFO     | executing command: cat /etc/os-release
[2026-04-11 18:18:54] 2026-04-11 16:18:22,843 | INFO     | cat /etc/os-release:
[2026-04-11 18:18:54] NAME="CentOS Linux"
[2026-04-11 18:18:54] VERSION="7 (Core)"
[2026-04-11 18:18:54] ID="centos"
[2026-04-11 18:18:54] ID_LIKE="rhel fedora"
[2026-04-11 18:18:54] VERSION_ID="7"
[2026-04-11 18:18:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 18:18:54] ANSI_COLOR="0;31"
[2026-04-11 18:18:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 18:18:54] HOME_URL="https://www.centos.org/"
[2026-04-11 18:18:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 18:18:54] 
[2026-04-11 18:18:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 18:18:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 18:18:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 18:18:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 18:18:54] 
[2026-04-11 18:18:54] 2026-04-11 16:18:22,843 | INFO     | **************************************
[2026-04-11 18:18:54] 2026-04-11 16:18:23,346 | INFO     | executing command: df -mP /tmp/job_11489520/atlas/pilot/slots/0
[2026-04-11 18:18:54] 2026-04-11 16:18:23,352 | INFO     | sufficient remaining disk space (227694084096 B)
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | INFO     | update_server=False
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 18:18:54] 2026-04-11 16:18:23,353 | INFO     | aborting loop
[2026-04-11 18:18:54] 2026-04-11 16:18:23,634 | INFO     | all payload control threads have been joined
[2026-04-11 18:18:54] 2026-04-11 16:18:23,837 | INFO     | all data control threads have been joined
[2026-04-11 18:18:54] 2026-04-11 16:18:24,358 | INFO     | [job] retrieve thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:24,358 | INFO     | [job] job monitor thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:24,359 | INFO     | [job] queue monitor thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:24,366 | INFO     | [data] copytool_in thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:24,516 | INFO     | [payload] failed_post thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:24,640 | INFO     | [payload] control thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:24,801 | INFO     | all job control threads have been joined
[2026-04-11 18:18:54] 2026-04-11 16:18:24,842 | INFO     | [data] control thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:25,108 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:25,359 | INFO     | [data] copytool_out thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:25,424 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:25,483 | INFO     | [job] validate thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:25,659 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:25,661 | INFO     | [payload] validate_post thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:25,807 | INFO     | [job] control thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:27,359 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:34,210 | INFO     | job.realtimelogging is not enabled
[2026-04-11 18:18:54] 2026-04-11 16:18:35,215 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 18:18:54] 2026-04-11 16:18:35,734 | INFO     | [monitor] cgroup control has ended
[2026-04-11 18:18:54] 2026-04-11 16:18:36,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062928640)>']
[2026-04-11 18:18:54] 2026-04-11 16:18:41,764 | INFO     | all workflow threads have been joined
[2026-04-11 18:18:54] 2026-04-11 16:18:41,764 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 18:18:54] 2026-04-11 16:18:41,764 | INFO     | traces error code: 0
[2026-04-11 18:18:54] 2026-04-11 16:18:41,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 18:18:54] 2026-04-11 16:18:53,995 | INFO     | PID=29835 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-11 18:18:54] 2026-04-11 16:18:53,995 | INFO     | .. there are 2 such processes running
[2026-04-11 18:18:54] 2026-04-11 16:18:53,995 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 18:18:54] 2026-04-11 16:18:53,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 18:18:54] 2026-04-11 16:18:53,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 18:18:54] 2026-04-11 16:18:53,995 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 18:18:54] 2026-04-11 16:18:53,995 | INFO     | [monitor] control thread has ended
[2026-04-11 18:18:54] 2026-04-11 16:18:54,061 [wrapper] ==== pilot stdout END ====
[2026-04-11 18:18:54] 2026-04-11 16:18:54,063 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 18:18:54] 2026-04-11 16:18:54,064 [wrapper] pilotpid: 29835
[2026-04-11 18:18:54] 2026-04-11 16:18:54,065 [wrapper] Pilot exit status: 0
[2026-04-11 18:18:54] 2026-04-11 16:18:54,070 [wrapper] pandaids: 7083378656
[2026-04-11 18:18:54] 2026-04-11 16:18:54,102 [wrapper] cleanup supervisor_pilot  2642 29836
[2026-04-11 18:18:54] 2026-04-11 16:18:54,103 [wrapper] Test setup, not cleaning
[2026-04-11 18:18:54] 2026-04-11 16:18:54,105 [wrapper] apfmon messages muted
[2026-04-11 18:18:54] 2026-04-11 16:18:54,106 [wrapper] ==== wrapper stdout END ====
[2026-04-11 18:18:54] 2026-04-11 16:18:54,107 [wrapper] ==== wrapper stderr END ====
[2026-04-11 18:18:54]  *** Error codes and diagnostics ***
[2026-04-11 18:18:54]     "exeErrorCode": 0,
[2026-04-11 18:18:54]     "pilotErrorCode": 0,
[2026-04-11 18:18:54]  *** Listing of results directory ***
[2026-04-11 18:18:54] total 421020
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user    644190 Apr 11 11:34 pilot3.tar.gz
[2026-04-11 18:18:54] -rwx------ 1 mf493845 unix-user     36322 Apr 11 12:11 runpilot2-wrapper.sh
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user      5094 Apr 11 12:13 queuedata.json
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user       100 Apr 11 16:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 18:18:54] -rwxr-xr-x 1 mf493845 unix-user      7986 Apr 11 16:26 run_atlas
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user       105 Apr 11 16:26 job.xml
[2026-04-11 18:18:54] -rw-r--r-- 2 mf493845 unix-user 227380627 Apr 11 17:24 EVNT.49263198._000667.pool.root.1
[2026-04-11 18:18:54] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 11 17:24 start_atlas.sh
[2026-04-11 18:18:54] drwxrwx--x 2 mf493845 unix-user       100 Apr 11 17:24 shared
[2026-04-11 18:18:54] -rw-r--r-- 2 mf493845 unix-user    656934 Apr 11 17:24 input.tar.gz
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user      6306 Apr 11 17:24 init_data.xml
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user         0 Apr 11 17:24 boinc_setup_complete
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user      8192 Apr 11 17:24 boinc_mmap_file
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user         0 Apr 11 17:24 boinc_lockfile
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user      2575 Apr 11 17:24 pandaJob.out
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user    997828 Apr 11 17:24 agis_schedconf.cvmfs.json
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user   1511579 Apr 11 17:24 agis_ddmendpoints.agis.ALL.json
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user       418 Apr 11 17:24 workernode_map.json
[2026-04-11 18:18:54] drwx------ 5 mf493845 unix-user       480 Apr 11 17:24 pilot3
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user 198444576 Apr 11 18:17 HITS.49263200._034003.pool.root.1
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user      1016 Apr 11 18:18 memory_monitor_summary.json
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user    287270 Apr 11 18:18 log.49263200._034003.job.log.tgz.1
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user      6332 Apr 11 18:18 heartbeat_new.json
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user      6222 Apr 11 18:18 heartbeat.json
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user       820 Apr 11 18:18 pilotlog.txt
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user        95 Apr 11 18:18 pilot_heartbeat.json
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user    345187 Apr 11 18:18 log.49263200._034003.job.log.1
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user       357 Apr 11 18:18 output.list
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user       410 Apr 11 18:18 runtime_log
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user    655360 Apr 11 18:18 result.tar.gz
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user      8841 Apr 11 18:18 runtime_log.err
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user       642 Apr 11 18:18 1e6496d5c495.diag
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user     21551 Apr 11 18:18 stderr.txt
[2026-04-11 18:18:54] HITS file was successfully produced:
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user 198444576 Apr 11 18:17 shared/HITS.pool.root.1
[2026-04-11 18:18:54]  *** Contents of shared directory: ***
[2026-04-11 18:18:54] total 417148
[2026-04-11 18:18:54] -rw-r--r-- 2 mf493845 unix-user 227380627 Apr 11 17:24 ATLAS.root_0
[2026-04-11 18:18:54] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 11 17:24 start_atlas.sh
[2026-04-11 18:18:54] -rw-r--r-- 2 mf493845 unix-user    656934 Apr 11 17:24 input.tar.gz
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user 198444576 Apr 11 18:17 HITS.pool.root.1
[2026-04-11 18:18:54] -rw------- 1 mf493845 unix-user    655360 Apr 11 18:18 result.tar.gz
18:18:55 (25129): run_atlas exited; CPU time 23766.972004
18:18:55 (25129): called boinc_finish(0)

</stderr_txt>
]]>

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