Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:59:44 (17228): wrapper (7.7.26015): starting
14:59:44 (17228): wrapper: running run_atlas (--nthreads 8)
[2026-04-11 14:59:44] Arguments: --nthreads 8
[2026-04-11 14:59:44] Threads: 8
[2026-04-11 14:59:44] Checking for CVMFS
[2026-04-11 14:59:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 14:59:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 14:59:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 14:59:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 14:59:53] 2.11.0.0 5811 54705 60300 158344 0 3 2952478 4096001 8 130560 2 1637440 99.128 2993811 261 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-04-11 14:59:53] CVMFS is ok
[2026-04-11 14:59:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 14:59:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 14:59:53] Further information can be found at the LHC@home message board.
[2026-04-11 14:59:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 14:59:53] Checking for apptainer binary...
[2026-04-11 14:59:53] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-04-11 14:59:53] apptainer is not installed, using version from CVMFS
[2026-04-11 14:59:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 15:00:19] WARNING: Environment variable TMPDIR already has value [/tmp/job_11488914/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node205
[2026-04-11 15:00:19] apptainer works
[2026-04-11 15:00:19] Set ATHENA_PROC_NUMBER=8
[2026-04-11 15:00:19] Set ATHENA_CORE_NUMBER=8
[2026-04-11 15:00:19] Starting ATLAS job with PandaID=7086959593
[2026-04-11 15:00:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11488914/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 16:21:58]  *** The last 200 lines of the pilot log: ***
[2026-04-11 16:21:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-11 16:21:58]  replicas=None
[2026-04-11 16:21:58]  scope=mc23_13p6TeV
[2026-04-11 16:21:58]  status=None
[2026-04-11 16:21:58]  status_code=0
[2026-04-11 16:21:58]  storage_token=
[2026-04-11 16:21:58]  surl=/tmp/job_11488914/atlas/pilot/slots/0/PanDA_Pilot-7086959593/log.49263191._045700.job.log.tgz.1
[2026-04-11 16:21:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/04/log.49263191._045700.job.log.tgz.1
[2026-04-11 16:21:58]  workdir=None
[2026-04-11 16:21:58] ]
[2026-04-11 16:21:58] 2026-04-11 14:21:02,044 | INFO     | transferring file log.49263191._045700.job.log.tgz.1 from /tmp/job_11488914/atlas/pilot/slots/0/PanDA_Pilot-7086959593/log.49263191._045700.job.log.tgz.1 to /tmp/j
[2026-04-11 16:21:58] 2026-04-11 14:21:02,044 | INFO     | executing command: /usr/bin/env mv /tmp/job_11488914/atlas/pilot/slots/0/PanDA_Pilot-7086959593/log.49263191._045700.job.log.tgz.1 /tmp/job_11488914/atlas/pilot/sl
[2026-04-11 16:21:58] 2026-04-11 14:21:02,052 | INFO     | adding to output.list: log.49263191._045700.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/04/log.49263191._045700.job.log.tg
[2026-04-11 16:21:58] 2026-04-11 14:21:02,052 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-11 16:21:58] 2026-04-11 14:21:02,052 | INFO     | summary of transferred files:
[2026-04-11 16:21:58] 2026-04-11 14:21:02,052 | INFO     |  -- lfn=log.49263191._045700.job.log.tgz.1, status_code=0, status=transferred
[2026-04-11 16:21:58] 2026-04-11 14:21:02,052 | INFO     | stage-out finished correctly
[2026-04-11 16:21:58] 2026-04-11 14:21:02,133 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-11 16:21:58] 2026-04-11 14:21:04,260 | INFO     | PID=18669 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-11 16:21:58] 2026-04-11 14:21:04,260 | INFO     | .. there are 7 such processes running
[2026-04-11 16:21:58] 2026-04-11 14:21:04,777 | INFO     | job 7086959593 has state=finished
[2026-04-11 16:21:58] 2026-04-11 14:21:04,777 | INFO     | preparing for final server update for job 7086959593 in state='finished'
[2026-04-11 16:21:58] 2026-04-11 14:21:04,777 | INFO     | reading metadata from: /tmp/job_11488914/atlas/pilot/slots/0/PanDA_Pilot-7086959593/jobReport.json
[2026-04-11 16:21:58] 2026-04-11 14:21:04,778 | INFO     | added worker_node to metadata from /tmp/job_11488914/atlas/pilot/slots/0/workernode_map.json
[2026-04-11 16:21:58] 2026-04-11 14:21:04,778 | INFO     | this job has now completed (state=finished)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,778 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,778 | INFO     | log transfer has been attempted: DONE
[2026-04-11 16:21:58] 2026-04-11 14:21:04,779 | INFO     | job 7086959593 has finished - writing final server update
[2026-04-11 16:21:58] 2026-04-11 14:21:04,779 | INFO     | total number of processed events: 400 (read)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,797 | INFO     | using path: /tmp/job_11488914/atlas/pilot/slots/0/PanDA_Pilot-7086959593/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,797 | INFO     | extracted standard info from prmon json
[2026-04-11 16:21:58] 2026-04-11 14:21:04,797 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 16:21:58] 2026-04-11 14:21:04,797 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 16:21:58] 2026-04-11 14:21:04,798 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 16:21:58] 2026-04-11 14:21:04,798 | INFO     | fitting pss+swap vs Time
[2026-04-11 16:21:58] 2026-04-11 14:21:04,798 | INFO     | sum of square deviations: 93240818.0
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | sum of deviations: 61620569408.999954
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | mean x (centered): 0.0
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | mean y: 1892588.6417910447
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | intersect: 1892588.6417910447
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | chi2: 9.358608037121723
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | current memory leak: 660.88 B/s (using 67 data points, chi2=9.36)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | could have reported an average CPU frequency of 2490 MHz (6 samples)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | ..............................
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | . Timing measurements:
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | . get job = 0 s
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | . initial setup = 11 s
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | . payload setup = 171 s
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | . stage-in = 0 s
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | . payload execution = 4509 s
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | . stage-out = 0 s
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | . log creation = 0 s
[2026-04-11 16:21:58] 2026-04-11 14:21:04,799 | INFO     | ..............................
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | 
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | job summary report
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | --------------------------------------------------
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | PanDA job id: 7086959593
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | task id: 49263191
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | errors: (none)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | pilot state: finished 
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | transexitcode: 0
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | exeerrorcode: 0
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | exeerrordiag: 
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | exitcode: 0
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | exitmsg: OK
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | cpuconsumptiontime: 20439 s
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | nevents: 400
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | neventsw: 0
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | pid: 25497
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | pgrp: 25497
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | corecount: 8
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | event service: False
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | sizes: {0: 2279966, 1: 2281596, 11: 2281624, 4685: 2307785, 4686: 2316869, 4688: 2317007}
[2026-04-11 16:21:58] 2026-04-11 14:21:04,848 | INFO     | --------------------------------------------------
[2026-04-11 16:21:58] 2026-04-11 14:21:04,849 | INFO     | 
[2026-04-11 16:21:58] 2026-04-11 14:21:04,849 | INFO     | executing command: ls -lF /tmp/job_11488914/atlas/pilot/slots/0
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | job 7086959593 has completed (purged errors)
[2026-04-11 16:21:58] 2026-04-11 14:21:04,859 | INFO     | overall cleanup function is called
[2026-04-11 16:21:58] 2026-04-11 14:21:05,839 | WARNING  | process 25497 can no longer be monitored (due to stat problems) - aborting
[2026-04-11 16:21:58] 2026-04-11 14:21:05,864 | INFO     | --- collectZombieJob: --- 10, [25497]
[2026-04-11 16:21:58] 2026-04-11 14:21:05,864 | INFO     | zombie collector waiting for pid 25497
[2026-04-11 16:21:58] 2026-04-11 14:21:05,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 16:21:58] 2026-04-11 14:21:05,864 | INFO     | collected zombie processes
[2026-04-11 16:21:58] 2026-04-11 14:21:05,864 | INFO     | will attempt to kill all subprocesses of pid=25497
[2026-04-11 16:21:58] 2026-04-11 14:21:05,980 | INFO     | using path: /tmp/job_11488914/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 16:21:58] 2026-04-11 14:21:05,981 | INFO     | using path: /tmp/job_11488914/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 16:21:58] 2026-04-11 14:21:05,981 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-11 16:21:58] 2026-04-11 14:21:05,981 | WARNING  | maxPSS not found in memory monitor output
[2026-04-11 16:21:58] 2026-04-11 14:21:05,981 | INFO     | skipping file size check of payload stdout file (/tmp/job_11488914/atlas/pilot/slots/0/PanDA_Pilot-7086959593/payload.stdout) since it has not been created yet
[2026-04-11 16:21:58] 2026-04-11 14:21:05,981 | INFO     | executing command: df -mP /tmp/job_11488914/atlas/pilot/slots/0
[2026-04-11 16:21:58] 2026-04-11 14:21:05,989 | INFO     | sufficient remaining disk space (224180305920 B)
[2026-04-11 16:21:58] 2026-04-11 14:21:05,989 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-11 16:21:58] 2026-04-11 14:21:05,989 | INFO     | output file size check: skipping output file /tmp/job_11488914/atlas/pilot/slots/0/PanDA_Pilot-7086959593/HITS.49263191._045700.pool.root.1 since it does not exist
[2026-04-11 16:21:58] 2026-04-11 14:21:06,122 | INFO     | process IDs to be killed: [25497] (in reverse order)
[2026-04-11 16:21:58] 2026-04-11 14:21:06,162 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 16:21:58] 2026-04-11 14:21:06,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 16:21:58] 2026-04-11 14:21:06,169 | INFO     | did not find any defunct processes belonging to 25497
[2026-04-11 16:21:58] 2026-04-11 14:21:06,175 | INFO     | did not find any defunct processes belonging to 25497
[2026-04-11 16:21:58] 2026-04-11 14:21:06,175 | INFO     | Ready for new job
[2026-04-11 16:21:58] 2026-04-11 14:21:06,175 | INFO     | **************************************
[2026-04-11 16:21:58] 2026-04-11 14:21:06,175 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 16:21:58] 2026-04-11 14:21:06,175 | INFO     | **************************************
[2026-04-11 16:21:58] 2026-04-11 14:21:06,175 | INFO     | 
[2026-04-11 16:21:58] 2026-04-11 14:21:06,189 | INFO     | architecture information:
[2026-04-11 16:21:58] 2026-04-11 14:21:06,189 | INFO     | executing command: cat /etc/os-release
[2026-04-11 16:21:58] 2026-04-11 14:21:06,196 | INFO     | cat /etc/os-release:
[2026-04-11 16:21:58] NAME="CentOS Linux"
[2026-04-11 16:21:58] VERSION="7 (Core)"
[2026-04-11 16:21:58] ID="centos"
[2026-04-11 16:21:58] ID_LIKE="rhel fedora"
[2026-04-11 16:21:58] VERSION_ID="7"
[2026-04-11 16:21:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 16:21:58] ANSI_COLOR="0;31"
[2026-04-11 16:21:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 16:21:58] HOME_URL="https://www.centos.org/"
[2026-04-11 16:21:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 16:21:58] 
[2026-04-11 16:21:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 16:21:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 16:21:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 16:21:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 16:21:58] 
[2026-04-11 16:21:58] 2026-04-11 14:21:06,196 | INFO     | **************************************
[2026-04-11 16:21:58] 2026-04-11 14:21:06,202 | INFO     | number of running child processes to parent process 25497: 1
[2026-04-11 16:21:58] 2026-04-11 14:21:06,202 | INFO     | maximum number of monitored processes: 9
[2026-04-11 16:21:58] 2026-04-11 14:21:06,202 | INFO     | aborting job monitoring since job object (job id=7086959593) has expired
[2026-04-11 16:21:58] 2026-04-11 14:21:06,699 | INFO     | executing command: df -mP /tmp/job_11488914/atlas/pilot/slots/0
[2026-04-11 16:21:58] 2026-04-11 14:21:06,707 | INFO     | sufficient remaining disk space (224179257344 B)
[2026-04-11 16:21:58] 2026-04-11 14:21:06,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 16:21:58] 2026-04-11 14:21:06,707 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 16:21:58] 2026-04-11 14:21:06,707 | INFO     | update_server=False
[2026-04-11 16:21:58] 2026-04-11 14:21:06,707 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 16:21:58] 2026-04-11 14:21:06,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 16:21:58] 2026-04-11 14:21:06,707 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 16:21:58] 2026-04-11 14:21:06,707 | INFO     | will abort loop
[2026-04-11 16:21:58] 2026-04-11 14:21:07,555 | INFO     | all data control threads have been joined
[2026-04-11 16:21:58] 2026-04-11 14:21:07,607 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 16:21:58] 2026-04-11 14:21:07,709 | INFO     | [job] queue monitor thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:07,712 | INFO     | [job] retrieve thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:07,712 | INFO     | [job] job monitor thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:07,760 | INFO     | all job control threads have been joined
[2026-04-11 16:21:58] 2026-04-11 14:21:07,999 | INFO     | all payload control threads have been joined
[2026-04-11 16:21:58] 2026-04-11 14:21:08,179 | INFO     | [job] validate thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,183 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 16:21:58] 2026-04-11 14:21:08,210 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,367 | INFO     | [payload] failed_post thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,560 | INFO     | [data] control thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,641 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,706 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,714 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,765 | INFO     | [job] control thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,835 | INFO     | [payload] validate_post thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:08,922 | INFO     | [data] copytool_in thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:09,001 | INFO     | [payload] control thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:09,613 | INFO     | [data] copytool_out thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:12,189 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 16:21:58] 2026-04-11 14:21:36,449 | INFO     | PID=18669 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-11 16:21:58] 2026-04-11 14:21:36,449 | INFO     | .. there are 6 such processes running
[2026-04-11 16:21:58] 2026-04-11 14:21:36,450 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 16:21:58] 2026-04-11 14:21:36,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 16:21:58] 2026-04-11 14:21:36,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 16:21:58] 2026-04-11 14:21:51,332 | INFO     | [monitor] cgroup control has ended
[2026-04-11 16:21:58] 2026-04-11 14:21:52,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456058988288)>']
[2026-04-11 16:21:58] 2026-04-11 14:21:53,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 16:21:58] 2026-04-11 14:21:53,535 | INFO     | [monitor] control thread has ended
[2026-04-11 16:21:58] 2026-04-11 14:21:57,881 | INFO     | all workflow threads have been joined
[2026-04-11 16:21:58] 2026-04-11 14:21:57,881 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 16:21:58] 2026-04-11 14:21:57,881 | INFO     | traces error code: 0
[2026-04-11 16:21:58] 2026-04-11 14:21:57,881 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 16:21:58] 2026-04-11 14:21:57,934 [wrapper] ==== pilot stdout END ====
[2026-04-11 16:21:58] 2026-04-11 14:21:57,935 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 16:21:58] 2026-04-11 14:21:57,937 [wrapper] pilotpid: 18669
[2026-04-11 16:21:58] 2026-04-11 14:21:57,938 [wrapper] Pilot exit status: 0
[2026-04-11 16:21:58] 2026-04-11 14:21:57,942 [wrapper] pandaids: 7086959593
[2026-04-11 16:21:58] 2026-04-11 14:21:57,965 [wrapper] cleanup supervisor_pilot 17953 18671
[2026-04-11 16:21:58] 2026-04-11 14:21:57,966 [wrapper] Test setup, not cleaning
[2026-04-11 16:21:58] 2026-04-11 14:21:57,967 [wrapper] apfmon messages muted
[2026-04-11 16:21:58] 2026-04-11 14:21:57,968 [wrapper] ==== wrapper stdout END ====
[2026-04-11 16:21:58] 2026-04-11 14:21:57,969 [wrapper] ==== wrapper stderr END ====
[2026-04-11 16:21:58]  *** Error codes and diagnostics ***
[2026-04-11 16:21:58]     "exeErrorCode": 0,
[2026-04-11 16:21:58]     "pilotErrorCode": 0,
[2026-04-11 16:21:58]  *** Listing of results directory ***
[2026-04-11 16:21:58] total 414728
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user    644190 Apr 11 10:42 pilot3.tar.gz
[2026-04-11 16:21:58] -rwx------ 1 mf493845 unix-user     36322 Apr 11 10:47 runpilot2-wrapper.sh
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      5094 Apr 11 10:48 queuedata.json
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user       100 Apr 11 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 16:21:58] -rwxr-xr-x 1 mf493845 unix-user      7986 Apr 11 14:02 run_atlas
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user       105 Apr 11 14:02 job.xml
[2026-04-11 16:21:58] -rw-r--r-- 2 mf493845 unix-user 223952335 Apr 11 14:59 EVNT.49263189._001011.pool.root.1
[2026-04-11 16:21:58] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 11 14:59 start_atlas.sh
[2026-04-11 16:21:58] drwxrwx--x 2 mf493845 unix-user       100 Apr 11 14:59 shared
[2026-04-11 16:21:58] -rw-r--r-- 2 mf493845 unix-user    656937 Apr 11 14:59 input.tar.gz
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      6307 Apr 11 14:59 init_data.xml
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user         0 Apr 11 14:59 boinc_setup_complete
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      8192 Apr 11 14:59 boinc_mmap_file
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user         0 Apr 11 14:59 boinc_lockfile
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      2577 Apr 11 15:00 pandaJob.out
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user    997836 Apr 11 15:02 agis_schedconf.cvmfs.json
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user   1511579 Apr 11 15:02 agis_ddmendpoints.agis.ALL.json
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user       416 Apr 11 15:02 workernode_map.json
[2026-04-11 16:21:58] drwx------ 5 mf493845 unix-user       480 Apr 11 15:02 pilot3
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user 195149922 Apr 11 16:20 HITS.49263191._045700.pool.root.1
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      1015 Apr 11 16:20 memory_monitor_summary.json
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user    286760 Apr 11 16:21 log.49263191._045700.job.log.tgz.1
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      6338 Apr 11 16:21 heartbeat_new.json
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      6228 Apr 11 16:21 heartbeat.json
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user        95 Apr 11 16:21 pilot_heartbeat.json
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      5118 Apr 11 16:21 pilotlog.txt
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user    484510 Apr 11 16:21 log.49263191._045700.job.log.1
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user       357 Apr 11 16:21 output.list
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user       410 Apr 11 16:21 runtime_log
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user    788480 Apr 11 16:21 result.tar.gz
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user      8841 Apr 11 16:21 runtime_log.err
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user       644 Apr 11 16:21 0a943b297b61.diag
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user     22639 Apr 11 16:21 stderr.txt
[2026-04-11 16:21:58] HITS file was successfully produced:
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user 195149922 Apr 11 16:20 shared/HITS.pool.root.1
[2026-04-11 16:21:58]  *** Contents of shared directory: ***
[2026-04-11 16:21:58] total 410716
[2026-04-11 16:21:58] -rw-r--r-- 2 mf493845 unix-user 223952335 Apr 11 14:59 ATLAS.root_0
[2026-04-11 16:21:58] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 11 14:59 start_atlas.sh
[2026-04-11 16:21:58] -rw-r--r-- 2 mf493845 unix-user    656937 Apr 11 14:59 input.tar.gz
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user 195149922 Apr 11 16:20 HITS.pool.root.1
[2026-04-11 16:21:58] -rw------- 1 mf493845 unix-user    788480 Apr 11 16:21 result.tar.gz
16:21:59 (17228): run_atlas exited; CPU time 20505.574333
16:21:59 (17228): called boinc_finish(0)

</stderr_txt>
]]>

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