Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:15:52 (1608968): wrapper (7.7.26015): starting
01:15:52 (1608968): wrapper: running run_atlas (--nthreads 3)
[2026-04-12 01:15:52] Arguments: --nthreads 3
[2026-04-12 01:15:52] Threads: 3
[2026-04-12 01:15:52] Checking for CVMFS
[2026-04-12 01:15:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 01:15:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 01:15:53] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 01:15:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 01:15:53] 2.9.2.0 1148888 2901 78016 158359 0 49 33065069 36864001 0 130560 0 1761903 99.988 112954 14925 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 01:15:53] CVMFS is ok
[2026-04-12 01:15:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 01:15:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 01:15:53] Further information can be found at the LHC@home message board.
[2026-04-12 01:15:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 01:15:53] Checking for apptainer binary...
[2026-04-12 01:15:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 01:15:53] Running /usr/bin/apptainer --version
[2026-04-12 01:15:53] apptainer version 1.4.1-1.1
[2026-04-12 01:15:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 01:15:53] belleA253
[2026-04-12 01:15:53] apptainer works
[2026-04-12 01:15:53] Set ATHENA_PROC_NUMBER=3
[2026-04-12 01:15:53] Set ATHENA_CORE_NUMBER=3
[2026-04-12 01:15:53] Starting ATLAS job with PandaID=7088834143
[2026-04-12 01:15:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 02:55:22]  *** The last 200 lines of the pilot log: ***
[2026-04-12 02:55:22] 2026-04-12 00:54:50,533 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,533 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,533 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,533 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,533 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,533 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,533 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,533 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,534 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,534 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,534 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,534 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 02:55:22] 2026-04-12 00:54:50,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,534 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 02:55:22] 2026-04-12 00:54:50,534 | INFO     | job 7088834143 has completed (purged errors)
[2026-04-12 02:55:22] 2026-04-12 00:54:50,534 | INFO     | overall cleanup function is called
[2026-04-12 02:55:22] 2026-04-12 00:54:51,540 | INFO     | --- collectZombieJob: --- 10, [1617449]
[2026-04-12 02:55:22] 2026-04-12 00:54:51,541 | INFO     | zombie collector waiting for pid 1617449
[2026-04-12 02:55:22] 2026-04-12 00:54:51,541 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 02:55:22] 2026-04-12 00:54:51,541 | INFO     | collected zombie processes
[2026-04-12 02:55:22] 2026-04-12 00:54:51,541 | INFO     | will attempt to kill all subprocesses of pid=1617449
[2026-04-12 02:55:22] 2026-04-12 00:54:51,582 | INFO     | process IDs to be killed: [1617449] (in reverse order)
[2026-04-12 02:55:22] 2026-04-12 00:54:51,607 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 02:55:22] 2026-04-12 00:54:51,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 02:55:22] 2026-04-12 00:54:51,608 | INFO     | did not find any defunct processes belonging to 1617449
[2026-04-12 02:55:22] 2026-04-12 00:54:51,609 | INFO     | did not find any defunct processes belonging to 1617449
[2026-04-12 02:55:22] 2026-04-12 00:54:51,610 | INFO     | Ready for new job
[2026-04-12 02:55:22] 2026-04-12 00:54:51,610 | INFO     | **************************************
[2026-04-12 02:55:22] 2026-04-12 00:54:51,610 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 02:55:22] 2026-04-12 00:54:51,610 | INFO     | **************************************
[2026-04-12 02:55:22] 2026-04-12 00:54:51,610 | INFO     | 
[2026-04-12 02:55:22] 2026-04-12 00:54:51,611 | INFO     | architecture information:
[2026-04-12 02:55:22] 2026-04-12 00:54:51,611 | INFO     | executing command: cat /etc/os-release
[2026-04-12 02:55:22] 2026-04-12 00:54:51,620 | INFO     | cat /etc/os-release:
[2026-04-12 02:55:22] NAME="CentOS Linux"
[2026-04-12 02:55:22] VERSION="7 (Core)"
[2026-04-12 02:55:22] ID="centos"
[2026-04-12 02:55:22] ID_LIKE="rhel fedora"
[2026-04-12 02:55:22] VERSION_ID="7"
[2026-04-12 02:55:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 02:55:22] ANSI_COLOR="0;31"
[2026-04-12 02:55:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 02:55:22] HOME_URL="https://www.centos.org/"
[2026-04-12 02:55:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 02:55:22] 
[2026-04-12 02:55:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 02:55:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 02:55:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 02:55:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 02:55:22] 
[2026-04-12 02:55:22] 2026-04-12 00:54:51,620 | INFO     | **************************************
[2026-04-12 02:55:22] 2026-04-12 00:54:52,123 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 02:55:22] 2026-04-12 00:54:52,137 | INFO     | sufficient remaining disk space (371485310976 B)
[2026-04-12 02:55:22] 2026-04-12 00:54:52,137 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 02:55:22] 2026-04-12 00:54:52,137 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 02:55:22] 2026-04-12 00:54:52,137 | INFO     | update_server=False
[2026-04-12 02:55:22] 2026-04-12 00:54:52,137 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 02:55:22] 2026-04-12 00:54:52,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 02:55:22] 2026-04-12 00:54:52,138 | INFO     | aborting loop
[2026-04-12 02:55:22] 2026-04-12 00:54:52,138 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 02:55:22] 2026-04-12 00:54:52,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 02:55:22] 2026-04-12 00:54:53,143 | INFO     | [job] retrieve thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:53,143 | INFO     | [job] queue monitor thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:53,144 | INFO     | [job] job monitor thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:53,178 | INFO     | all data control threads have been joined
[2026-04-12 02:55:22] 2026-04-12 00:54:53,191 | INFO     | all job control threads have been joined
[2026-04-12 02:55:22] 2026-04-12 00:54:53,247 | INFO     | all payload control threads have been joined
[2026-04-12 02:55:22] 2026-04-12 00:54:53,387 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 02:55:22] 2026-04-12 00:54:53,521 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,051 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,134 | INFO     | [payload] validate_post thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,184 | INFO     | [data] control thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,187 | INFO     | [data] copytool_out thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,196 | INFO     | [job] control thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,252 | INFO     | [payload] control thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,397 | INFO     | [job] validate thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,442 | INFO     | [payload] failed_post thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,455 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,456 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:54,492 | INFO     | [data] copytool_in thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:54:57,394 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 02:55:22] 2026-04-12 00:55:10,174 | INFO     | [monitor] cgroup control has ended
[2026-04-12 02:55:22] 2026-04-12 00:55:11,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026063292224)>', '<ExcThread(monitor, started 140025094190848)>']
[2026-04-12 02:55:22] 2026-04-12 00:55:16,782 | INFO     | all workflow threads have been joined
[2026-04-12 02:55:22] 2026-04-12 00:55:16,782 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 02:55:22] 2026-04-12 00:55:16,782 | INFO     | traces error code: 0
[2026-04-12 02:55:22] 2026-04-12 00:55:16,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 02:55:22] 2026-04-12 00:55:22,242 | INFO     | PID=1613010 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 02:55:22] 2026-04-12 00:55:22,243 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 02:55:22] 2026-04-12 00:55:22,243 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 02:55:22] 2026-04-12 00:55:22,243 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 02:55:22] 2026-04-12 00:55:22,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 02:55:22] 2026-04-12 00:55:22,243 | INFO     | [monitor] control thread has ended
[2026-04-12 02:55:22] 2026-04-12 00:55:22,290 [wrapper] ==== pilot stdout END ====
[2026-04-12 02:55:22] 2026-04-12 00:55:22,292 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 02:55:22] 2026-04-12 00:55:22,295 [wrapper] pilotpid: 1613010
[2026-04-12 02:55:22] 2026-04-12 00:55:22,297 [wrapper] Pilot exit status: 0
[2026-04-12 02:55:22] 2026-04-12 00:55:22,305 [wrapper] pandaids: 7088834143
[2026-04-12 02:55:22] 2026-04-12 00:55:22,321 [wrapper] cleanup supervisor_pilot 1622925 1613011
[2026-04-12 02:55:22] 2026-04-12 00:55:22,324 [wrapper] Test setup, not cleaning
[2026-04-12 02:55:22] 2026-04-12 00:55:22,326 [wrapper] apfmon messages muted
[2026-04-12 02:55:22] 2026-04-12 00:55:22,329 [wrapper] ==== wrapper stdout END ====
[2026-04-12 02:55:22] 2026-04-12 00:55:22,331 [wrapper] ==== wrapper stderr END ====
[2026-04-12 02:55:22]  *** Error codes and diagnostics ***
[2026-04-12 02:55:22]     "exeErrorCode": 0,
[2026-04-12 02:55:22]     "pilotErrorCode": 0,
[2026-04-12 02:55:22]  *** Listing of results directory ***
[2026-04-12 02:55:22] total 414488
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc      5094 Apr 11 12:26 queuedata.json
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc    644190 Apr 11 12:26 pilot3.tar.gz
[2026-04-12 02:55:22] -rwx------ 1 boinc boinc     36322 Apr 11 12:26 runpilot2-wrapper.sh
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc       100 Apr 12 01:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 02:55:22] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 01:15 run_atlas
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc       105 Apr 12 01:15 job.xml
[2026-04-12 02:55:22] -rw-r--r-- 2 boinc boinc 215448386 Apr 12 01:15 EVNT.48967100._000153.pool.root.1
[2026-04-12 02:55:22] -rw-r--r-- 2 boinc boinc    656918 Apr 12 01:15 input.tar.gz
[2026-04-12 02:55:22] -rw-r--r-- 2 boinc boinc     15665 Apr 12 01:15 start_atlas.sh
[2026-04-12 02:55:22] drwxrwx--x 2 boinc boinc      4096 Apr 12 01:15 shared
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc         0 Apr 12 01:15 boinc_setup_complete
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc      6363 Apr 12 01:15 init_data.xml
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc         0 Apr 12 01:15 boinc_lockfile
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc      2579 Apr 12 01:15 pandaJob.out
[2026-04-12 02:55:22] -rw------- 1 boinc boinc    997799 Apr 12 01:16 agis_schedconf.cvmfs.json
[2026-04-12 02:55:22] -rw------- 1 boinc boinc   1511579 Apr 12 01:16 agis_ddmendpoints.agis.ALL.json
[2026-04-12 02:55:22] -rw------- 1 boinc boinc       418 Apr 12 01:16 workernode_map.json
[2026-04-12 02:55:22] drwx------ 5 boinc boinc      4096 Apr 12 01:16 pilot3
[2026-04-12 02:55:22] -rw------- 1 boinc boinc 203321832 Apr 12 02:54 HITS.48967102._007700.pool.root.1
[2026-04-12 02:55:22] -rw------- 1 boinc boinc        95 Apr 12 02:54 pilot_heartbeat.json
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc       487 Apr 12 02:54 boinc_task_state.xml
[2026-04-12 02:55:22] -rw------- 1 boinc boinc      1014 Apr 12 02:54 memory_monitor_summary.json
[2026-04-12 02:55:22] -rw------- 1 boinc boinc    234652 Apr 12 02:54 log.48967102._007700.job.log.tgz.1
[2026-04-12 02:55:22] -rw------- 1 boinc boinc      6326 Apr 12 02:54 heartbeat_new.json
[2026-04-12 02:55:22] -rw------- 1 boinc boinc      6217 Apr 12 02:54 heartbeat.json
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc      8192 Apr 12 02:55 boinc_mmap_file
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc        27 Apr 12 02:55 wrapper_checkpoint.txt
[2026-04-12 02:55:22] -rw------- 1 boinc boinc       747 Apr 12 02:55 pilotlog.txt
[2026-04-12 02:55:22] -rw------- 1 boinc boinc    572267 Apr 12 02:55 log.48967102._007700.job.log.1
[2026-04-12 02:55:22] -rw------- 1 boinc boinc       357 Apr 12 02:55 output.list
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc       410 Apr 12 02:55 runtime_log
[2026-04-12 02:55:22] -rw------- 1 boinc boinc    829440 Apr 12 02:55 result.tar.gz
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc      8533 Apr 12 02:55 runtime_log.err
[2026-04-12 02:55:22] -rw------- 1 boinc boinc       660 Apr 12 02:55 21c8452b662c.diag
[2026-04-12 02:55:22] -rw-r--r-- 1 boinc boinc     12030 Apr 12 02:55 stderr.txt
[2026-04-12 02:55:22] HITS file was successfully produced:
[2026-04-12 02:55:22] -rw------- 1 boinc boinc 203321832 Apr 12 02:54 shared/HITS.pool.root.1
[2026-04-12 02:55:22]  *** Contents of shared directory: ***
[2026-04-12 02:55:22] total 410440
[2026-04-12 02:55:22] -rw-r--r-- 2 boinc boinc 215448386 Apr 12 01:15 ATLAS.root_0
[2026-04-12 02:55:22] -rw-r--r-- 2 boinc boinc    656918 Apr 12 01:15 input.tar.gz
[2026-04-12 02:55:22] -rw-r--r-- 2 boinc boinc     15665 Apr 12 01:15 start_atlas.sh
[2026-04-12 02:55:22] -rw------- 1 boinc boinc 203321832 Apr 12 02:54 HITS.pool.root.1
[2026-04-12 02:55:22] -rw------- 1 boinc boinc    829440 Apr 12 02:55 result.tar.gz
02:55:23 (1608968): run_atlas exited; CPU time 16784.507127
02:55:23 (1608968): called boinc_finish(0)

</stderr_txt>
]]>

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