Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:08:56 (3042502): wrapper (7.7.26015): starting
00:08:56 (3042502): wrapper: running run_atlas (--nthreads 4)
[2026-04-12 00:08:56] Arguments: --nthreads 4
[2026-04-12 00:08:56] Threads: 4
[2026-04-12 00:08:56] Checking for CVMFS
[2026-04-12 00:08:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 00:08:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 00:08:56] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 00:08:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 00:08:57] 2.9.2.0 2561256 2769 94440 158358 3 9 19759298 36864001 0 130560 0 1813454 99.989 107283 16959 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 00:08:57] CVMFS is ok
[2026-04-12 00:08:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 00:08:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 00:08:57] Further information can be found at the LHC@home message board.
[2026-04-12 00:08:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 00:08:57] Checking for apptainer binary...
[2026-04-12 00:08:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 00:08:57] Running /usr/bin/apptainer --version
[2026-04-12 00:08:57] apptainer version 1.4.1-1.1
[2026-04-12 00:08:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 00:08:57] magicA250
[2026-04-12 00:08:57] apptainer works
[2026-04-12 00:08:57] Set ATHENA_PROC_NUMBER=4
[2026-04-12 00:08:57] Set ATHENA_CORE_NUMBER=4
[2026-04-12 00:08:57] Starting ATLAS job with PandaID=7086957353
[2026-04-12 00:08:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 01:27:22]  *** The last 200 lines of the pilot log: ***
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | job 7086957353 has completed (purged errors)
[2026-04-12 01:27:22] 2026-04-11 23:26:31,091 | INFO     | overall cleanup function is called
[2026-04-12 01:27:22] 2026-04-11 23:26:32,098 | INFO     | --- collectZombieJob: --- 10, [3051137]
[2026-04-12 01:27:22] 2026-04-11 23:26:32,098 | INFO     | zombie collector waiting for pid 3051137
[2026-04-12 01:27:22] 2026-04-11 23:26:32,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 01:27:22] 2026-04-11 23:26:32,099 | INFO     | collected zombie processes
[2026-04-12 01:27:22] 2026-04-11 23:26:32,099 | INFO     | will attempt to kill all subprocesses of pid=3051137
[2026-04-12 01:27:22] 2026-04-11 23:26:32,141 | INFO     | process IDs to be killed: [3051137] (in reverse order)
[2026-04-12 01:27:22] 2026-04-11 23:26:32,175 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 01:27:22] 2026-04-11 23:26:32,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 01:27:22] 2026-04-11 23:26:32,177 | INFO     | did not find any defunct processes belonging to 3051137
[2026-04-12 01:27:22] 2026-04-11 23:26:32,178 | INFO     | did not find any defunct processes belonging to 3051137
[2026-04-12 01:27:22] 2026-04-11 23:26:32,178 | INFO     | Ready for new job
[2026-04-12 01:27:22] 2026-04-11 23:26:32,179 | INFO     | **************************************
[2026-04-12 01:27:22] 2026-04-11 23:26:32,179 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 01:27:22] 2026-04-11 23:26:32,179 | INFO     | **************************************
[2026-04-12 01:27:22] 2026-04-11 23:26:32,179 | INFO     | 
[2026-04-12 01:27:22] 2026-04-11 23:26:32,180 | INFO     | architecture information:
[2026-04-12 01:27:22] 2026-04-11 23:26:32,180 | INFO     | executing command: cat /etc/os-release
[2026-04-12 01:27:22] 2026-04-11 23:26:32,195 | INFO     | cat /etc/os-release:
[2026-04-12 01:27:22] NAME="CentOS Linux"
[2026-04-12 01:27:22] VERSION="7 (Core)"
[2026-04-12 01:27:22] ID="centos"
[2026-04-12 01:27:22] ID_LIKE="rhel fedora"
[2026-04-12 01:27:22] VERSION_ID="7"
[2026-04-12 01:27:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 01:27:22] ANSI_COLOR="0;31"
[2026-04-12 01:27:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 01:27:22] HOME_URL="https://www.centos.org/"
[2026-04-12 01:27:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 01:27:22] 
[2026-04-12 01:27:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 01:27:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 01:27:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 01:27:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 01:27:22] 
[2026-04-12 01:27:22] 2026-04-11 23:26:32,196 | INFO     | **************************************
[2026-04-12 01:27:22] 2026-04-11 23:26:32,699 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 01:27:22] 2026-04-11 23:26:32,718 | INFO     | sufficient remaining disk space (339989233664 B)
[2026-04-12 01:27:22] 2026-04-11 23:26:32,718 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 01:27:22] 2026-04-11 23:26:32,718 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 01:27:22] 2026-04-11 23:26:32,718 | INFO     | update_server=False
[2026-04-12 01:27:22] 2026-04-11 23:26:32,718 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 01:27:22] 2026-04-11 23:26:32,719 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 01:27:22] 2026-04-11 23:26:32,719 | INFO     | aborting loop
[2026-04-12 01:27:22] 2026-04-11 23:26:32,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 01:27:22] 2026-04-11 23:26:32,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 01:27:22] 2026-04-11 23:26:32,960 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 01:27:22] 2026-04-11 23:26:33,150 | INFO     | all payload control threads have been joined
[2026-04-12 01:27:22] 2026-04-11 23:26:33,452 | INFO     | all data control threads have been joined
[2026-04-12 01:27:22] 2026-04-11 23:26:33,724 | INFO     | [job] job monitor thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:33,724 | INFO     | [job] retrieve thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:33,725 | INFO     | [job] queue monitor thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:33,757 | INFO     | [data] copytool_in thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:33,947 | INFO     | [payload] failed_post thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:33,981 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:34,156 | INFO     | [payload] control thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:34,249 | INFO     | all job control threads have been joined
[2026-04-12 01:27:22] 2026-04-11 23:26:34,458 | INFO     | [data] control thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:34,466 | INFO     | [payload] validate_post thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:34,940 | INFO     | [job] validate thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:34,965 | INFO     | [data] copytool_out thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:35,035 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:35,093 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:35,255 | INFO     | [job] control thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:36,726 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:26:42,981 | INFO     | job.realtimelogging is not enabled
[2026-04-12 01:27:22] 2026-04-11 23:26:43,986 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 01:27:22] 2026-04-11 23:27:03,271 | INFO     | PID=3046628 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 01:27:22] 2026-04-11 23:27:03,272 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 01:27:22] 2026-04-11 23:27:03,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 01:27:22] 2026-04-11 23:27:03,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 01:27:22] 2026-04-11 23:27:15,915 | INFO     | [monitor] cgroup control has ended
[2026-04-12 01:27:22] 2026-04-11 23:27:17,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140695845988160)>', '<ExcThread(monitor, started 140694966478592)>']
[2026-04-12 01:27:22] 2026-04-11 23:27:18,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 01:27:22] 2026-04-11 23:27:18,352 | INFO     | [monitor] control thread has ended
[2026-04-12 01:27:22] 2026-04-11 23:27:22,708 | INFO     | all workflow threads have been joined
[2026-04-12 01:27:22] 2026-04-11 23:27:22,708 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 01:27:22] 2026-04-11 23:27:22,708 | INFO     | traces error code: 0
[2026-04-12 01:27:22] 2026-04-11 23:27:22,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 01:27:22] 2026-04-11 23:27:22,786 [wrapper] ==== pilot stdout END ====
[2026-04-12 01:27:22] 2026-04-11 23:27:22,790 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 01:27:22] 2026-04-11 23:27:22,794 [wrapper] pilotpid: 3046628
[2026-04-12 01:27:22] 2026-04-11 23:27:22,798 [wrapper] Pilot exit status: 0
[2026-04-12 01:27:22] 2026-04-11 23:27:22,810 [wrapper] pandaids: 7086957353
[2026-04-12 01:27:22] 2026-04-11 23:27:22,833 [wrapper] cleanup supervisor_pilot 3056961 3046629
[2026-04-12 01:27:22] 2026-04-11 23:27:22,836 [wrapper] Test setup, not cleaning
[2026-04-12 01:27:22] 2026-04-11 23:27:22,840 [wrapper] apfmon messages muted
[2026-04-12 01:27:22] 2026-04-11 23:27:22,844 [wrapper] ==== wrapper stdout END ====
[2026-04-12 01:27:22] 2026-04-11 23:27:22,848 [wrapper] ==== wrapper stderr END ====
[2026-04-12 01:27:22]  *** Error codes and diagnostics ***
[2026-04-12 01:27:22]     "exeErrorCode": 0,
[2026-04-12 01:27:22]     "pilotErrorCode": 0,
[2026-04-12 01:27:22]  *** Listing of results directory ***
[2026-04-12 01:27:22] total 420252
[2026-04-12 01:27:22] -rwx------ 1 boinc boinc     36322 Apr 11 09:45 runpilot2-wrapper.sh
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc      5094 Apr 11 09:46 queuedata.json
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc    644190 Apr 11 09:46 pilot3.tar.gz
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc       100 Apr 12 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 01:27:22] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 00:08 run_atlas
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc       105 Apr 12 00:08 job.xml
[2026-04-12 01:27:22] -rw-r--r-- 2 boinc boinc 225996227 Apr 12 00:08 EVNT.49263206._000895.pool.root.1
[2026-04-12 01:27:22] drwxrwx--x 2 boinc boinc      4096 Apr 12 00:08 shared
[2026-04-12 01:27:22] -rw-r--r-- 2 boinc boinc    656932 Apr 12 00:08 input.tar.gz
[2026-04-12 01:27:22] -rw-r--r-- 2 boinc boinc     15665 Apr 12 00:08 start_atlas.sh
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc         0 Apr 12 00:08 boinc_setup_complete
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc      6294 Apr 12 00:08 init_data.xml
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc         0 Apr 12 00:08 boinc_lockfile
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc      2575 Apr 12 00:08 pandaJob.out
[2026-04-12 01:27:22] -rw------- 1 boinc boinc    997815 Apr 12 00:09 agis_schedconf.cvmfs.json
[2026-04-12 01:27:22] -rw------- 1 boinc boinc   1511579 Apr 12 00:09 agis_ddmendpoints.agis.ALL.json
[2026-04-12 01:27:22] -rw------- 1 boinc boinc       430 Apr 12 00:09 workernode_map.json
[2026-04-12 01:27:22] drwx------ 5 boinc boinc      4096 Apr 12 00:09 pilot3
[2026-04-12 01:27:22] -rw------- 1 boinc boinc 198899520 Apr 12 01:26 HITS.49263208._035582.pool.root.1
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc       487 Apr 12 01:26 boinc_task_state.xml
[2026-04-12 01:27:22] -rw------- 1 boinc boinc      1022 Apr 12 01:26 memory_monitor_summary.json
[2026-04-12 01:27:22] -rw------- 1 boinc boinc    242607 Apr 12 01:26 log.49263208._035582.job.log.tgz.1
[2026-04-12 01:27:22] -rw------- 1 boinc boinc        95 Apr 12 01:26 pilot_heartbeat.json
[2026-04-12 01:27:22] -rw------- 1 boinc boinc      6339 Apr 12 01:26 heartbeat_new.json
[2026-04-12 01:27:22] -rw------- 1 boinc boinc      6230 Apr 12 01:26 heartbeat.json
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc        27 Apr 12 01:27 wrapper_checkpoint.txt
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc      8192 Apr 12 01:27 boinc_mmap_file
[2026-04-12 01:27:22] -rw------- 1 boinc boinc      4819 Apr 12 01:27 pilotlog.txt
[2026-04-12 01:27:22] -rw------- 1 boinc boinc    457711 Apr 12 01:27 log.49263208._035582.job.log.1
[2026-04-12 01:27:22] -rw------- 1 boinc boinc       357 Apr 12 01:27 output.list
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc       410 Apr 12 01:27 runtime_log
[2026-04-12 01:27:22] -rw------- 1 boinc boinc    716800 Apr 12 01:27 result.tar.gz
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc      8533 Apr 12 01:27 runtime_log.err
[2026-04-12 01:27:22] -rw------- 1 boinc boinc       660 Apr 12 01:27 fc13227054a8.diag
[2026-04-12 01:27:22] -rw-r--r-- 1 boinc boinc     11810 Apr 12 01:27 stderr.txt
[2026-04-12 01:27:22] HITS file was successfully produced:
[2026-04-12 01:27:22] -rw------- 1 boinc boinc 198899520 Apr 12 01:26 shared/HITS.pool.root.1
[2026-04-12 01:27:22]  *** Contents of shared directory: ***
[2026-04-12 01:27:22] total 416304
[2026-04-12 01:27:22] -rw-r--r-- 2 boinc boinc 225996227 Apr 12 00:08 ATLAS.root_0
[2026-04-12 01:27:22] -rw-r--r-- 2 boinc boinc    656932 Apr 12 00:08 input.tar.gz
[2026-04-12 01:27:22] -rw-r--r-- 2 boinc boinc     15665 Apr 12 00:08 start_atlas.sh
[2026-04-12 01:27:22] -rw------- 1 boinc boinc 198899520 Apr 12 01:26 HITS.pool.root.1
[2026-04-12 01:27:22] -rw------- 1 boinc boinc    716800 Apr 12 01:27 result.tar.gz
01:27:24 (3042502): run_atlas exited; CPU time 17076.337607
01:27:24 (3042502): called boinc_finish(0)

</stderr_txt>
]]>

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