Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:53:27 (4021698): wrapper (7.7.26015): starting
23:53:27 (4021698): wrapper: running run_atlas (--nthreads 2)
[2026-04-11 23:53:27] Arguments: --nthreads 2
[2026-04-11 23:53:27] Threads: 2
[2026-04-11 23:53:27] Checking for CVMFS
[2026-04-11 23:53:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 23:53:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 23:53:28] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 23:53:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 23:53:28] 2.9.2.0 3735197 2763 56292 158357 3 49 20008726 36864001 0 130560 0 1169912 99.983 105499 7637 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 23:53:28] CVMFS is ok
[2026-04-11 23:53:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 23:53:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 23:53:28] Further information can be found at the LHC@home message board.
[2026-04-11 23:53:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 23:53:28] Checking for apptainer binary...
[2026-04-11 23:53:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 23:53:28] Running /usr/bin/apptainer --version
[2026-04-11 23:53:28] apptainer version 1.4.1-1.1
[2026-04-11 23:53:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 23:53:28] magicA244
[2026-04-11 23:53:28] apptainer works
[2026-04-11 23:53:28] Set ATHENA_PROC_NUMBER=2
[2026-04-11 23:53:28] Set ATHENA_CORE_NUMBER=2
[2026-04-11 23:53:28] Starting ATLAS job with PandaID=7086994738
[2026-04-11 23:53:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 02:01:54]  *** The last 200 lines of the pilot log: ***
[2026-04-12 02:01:54] 2026-04-12 00:01:02,570 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 02:01:54] 2026-04-12 00:01:02,571 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 02:01:54] 2026-04-12 00:01:02,571 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 02:01:54] 2026-04-12 00:01:02,571 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 02:01:54] 2026-04-12 00:01:02,571 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 02:01:54] 2026-04-12 00:01:02,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 02:01:54] 2026-04-12 00:01:02,571 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 02:01:54] 2026-04-12 00:01:02,571 | INFO     | job 7086994738 has completed (purged errors)
[2026-04-12 02:01:54] 2026-04-12 00:01:02,571 | INFO     | overall cleanup function is called
[2026-04-12 02:01:54] 2026-04-12 00:01:03,576 | INFO     | --- collectZombieJob: --- 10, [4030132]
[2026-04-12 02:01:54] 2026-04-12 00:01:03,576 | INFO     | zombie collector waiting for pid 4030132
[2026-04-12 02:01:54] 2026-04-12 00:01:03,576 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 02:01:54] 2026-04-12 00:01:03,576 | INFO     | collected zombie processes
[2026-04-12 02:01:54] 2026-04-12 00:01:03,576 | INFO     | will attempt to kill all subprocesses of pid=4030132
[2026-04-12 02:01:54] 2026-04-12 00:01:03,604 | INFO     | process IDs to be killed: [4030132] (in reverse order)
[2026-04-12 02:01:54] 2026-04-12 00:01:03,625 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 02:01:54] 2026-04-12 00:01:03,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 02:01:54] 2026-04-12 00:01:03,626 | INFO     | did not find any defunct processes belonging to 4030132
[2026-04-12 02:01:54] 2026-04-12 00:01:03,626 | INFO     | did not find any defunct processes belonging to 4030132
[2026-04-12 02:01:54] 2026-04-12 00:01:03,626 | INFO     | Ready for new job
[2026-04-12 02:01:54] 2026-04-12 00:01:03,627 | INFO     | **************************************
[2026-04-12 02:01:54] 2026-04-12 00:01:03,627 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 02:01:54] 2026-04-12 00:01:03,627 | INFO     | **************************************
[2026-04-12 02:01:54] 2026-04-12 00:01:03,627 | INFO     | 
[2026-04-12 02:01:54] 2026-04-12 00:01:03,627 | INFO     | architecture information:
[2026-04-12 02:01:54] 2026-04-12 00:01:03,627 | INFO     | executing command: cat /etc/os-release
[2026-04-12 02:01:54] 2026-04-12 00:01:03,637 | INFO     | cat /etc/os-release:
[2026-04-12 02:01:54] NAME="CentOS Linux"
[2026-04-12 02:01:54] VERSION="7 (Core)"
[2026-04-12 02:01:54] ID="centos"
[2026-04-12 02:01:54] ID_LIKE="rhel fedora"
[2026-04-12 02:01:54] VERSION_ID="7"
[2026-04-12 02:01:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 02:01:54] ANSI_COLOR="0;31"
[2026-04-12 02:01:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 02:01:54] HOME_URL="https://www.centos.org/"
[2026-04-12 02:01:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 02:01:54] 
[2026-04-12 02:01:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 02:01:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 02:01:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 02:01:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 02:01:54] 
[2026-04-12 02:01:54] 2026-04-12 00:01:03,637 | INFO     | **************************************
[2026-04-12 02:01:54] 2026-04-12 00:01:04,139 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 02:01:54] 2026-04-12 00:01:04,148 | INFO     | sufficient remaining disk space (504188895232 B)
[2026-04-12 02:01:54] 2026-04-12 00:01:04,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 02:01:54] 2026-04-12 00:01:04,149 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 02:01:54] 2026-04-12 00:01:04,149 | INFO     | update_server=False
[2026-04-12 02:01:54] 2026-04-12 00:01:04,149 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 02:01:54] 2026-04-12 00:01:04,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 02:01:54] 2026-04-12 00:01:04,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 02:01:54] 2026-04-12 00:01:04,149 | INFO     | aborting loop
[2026-04-12 02:01:54] 2026-04-12 00:01:04,149 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 02:01:54] 2026-04-12 00:01:04,830 | INFO     | all payload control threads have been joined
[2026-04-12 02:01:54] 2026-04-12 00:01:05,074 | INFO     | all data control threads have been joined
[2026-04-12 02:01:54] 2026-04-12 00:01:05,151 | INFO     | [job] queue monitor thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:05,154 | INFO     | [job] retrieve thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:05,154 | INFO     | [job] job monitor thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:05,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 02:01:54] 2026-04-12 00:01:05,316 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:05,362 | INFO     | [payload] failed_post thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:05,381 | INFO     | [data] copytool_in thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:05,624 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:05,777 | INFO     | all job control threads have been joined
[2026-04-12 02:01:54] 2026-04-12 00:01:05,835 | INFO     | [payload] control thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:05,860 | INFO     | [payload] validate_post thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:06,079 | INFO     | [data] control thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:06,508 | INFO     | [job] validate thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:06,565 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:06,620 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:06,782 | INFO     | [job] control thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:07,167 | INFO     | [data] copytool_out thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:08,155 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 02:01:54] 2026-04-12 00:01:33,845 | INFO     | PID=4025724 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 02:01:54] 2026-04-12 00:01:33,845 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 02:01:54] 2026-04-12 00:01:33,845 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 02:01:54] 2026-04-12 00:01:33,845 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 02:01:54] 2026-04-12 00:01:49,433 | INFO     | [monitor] cgroup control has ended
[2026-04-12 02:01:54] 2026-04-12 00:01:49,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139792483723072)>', '<ExcThread(monitor, started 139791723132672)>']
[2026-04-12 02:01:54] 2026-04-12 00:01:49,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 02:01:54] 2026-04-12 00:01:49,925 | INFO     | [monitor] control thread has ended
[2026-04-12 02:01:54] 2026-04-12 00:01:54,633 | INFO     | all workflow threads have been joined
[2026-04-12 02:01:54] 2026-04-12 00:01:54,633 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 02:01:54] 2026-04-12 00:01:54,633 | INFO     | traces error code: 0
[2026-04-12 02:01:54] 2026-04-12 00:01:54,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 02:01:54] 2026-04-12 00:01:54,677 [wrapper] ==== pilot stdout END ====
[2026-04-12 02:01:54] 2026-04-12 00:01:54,681 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 02:01:54] 2026-04-12 00:01:54,683 [wrapper] pilotpid: 4025724
[2026-04-12 02:01:54] 2026-04-12 00:01:54,685 [wrapper] Pilot exit status: 0
[2026-04-12 02:01:54] 2026-04-12 00:01:54,692 [wrapper] pandaids: 7086994738
[2026-04-12 02:01:54] 2026-04-12 00:01:54,707 [wrapper] cleanup supervisor_pilot 4036042 4025725
[2026-04-12 02:01:54] 2026-04-12 00:01:54,709 [wrapper] Test setup, not cleaning
[2026-04-12 02:01:54] 2026-04-12 00:01:54,711 [wrapper] apfmon messages muted
[2026-04-12 02:01:54] 2026-04-12 00:01:54,714 [wrapper] ==== wrapper stdout END ====
[2026-04-12 02:01:54] 2026-04-12 00:01:54,716 [wrapper] ==== wrapper stderr END ====
[2026-04-12 02:01:54]  *** Error codes and diagnostics ***
[2026-04-12 02:01:54]     "exeErrorCode": 0,
[2026-04-12 02:01:54]     "pilotErrorCode": 0,
[2026-04-12 02:01:54]  *** Listing of results directory ***
[2026-04-12 02:01:54] total 412972
[2026-04-12 02:01:54] -rwx------ 1 boinc boinc     36322 Apr 11 11:31 runpilot2-wrapper.sh
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc    644190 Apr 11 11:34 pilot3.tar.gz
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc      5094 Apr 11 11:36 queuedata.json
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc       100 Apr 11 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 02:01:54] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 23:53 run_atlas
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc       105 Apr 11 23:53 job.xml
[2026-04-12 02:01:54] -rw-r--r-- 2 boinc boinc 225494147 Apr 11 23:53 EVNT.49263189._001045.pool.root.1
[2026-04-12 02:01:54] -rw-r--r-- 2 boinc boinc    656930 Apr 11 23:53 input.tar.gz
[2026-04-12 02:01:54] -rw-r--r-- 2 boinc boinc     15665 Apr 11 23:53 start_atlas.sh
[2026-04-12 02:01:54] drwxrwx--x 2 boinc boinc      4096 Apr 11 23:53 shared
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc         0 Apr 11 23:53 boinc_setup_complete
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc      6124 Apr 11 23:53 init_data.xml
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc         0 Apr 11 23:53 boinc_lockfile
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc      2578 Apr 11 23:53 pandaJob.out
[2026-04-12 02:01:54] -rw------- 1 boinc boinc    997815 Apr 11 23:53 agis_schedconf.cvmfs.json
[2026-04-12 02:01:54] -rw------- 1 boinc boinc   1511579 Apr 11 23:53 agis_ddmendpoints.agis.ALL.json
[2026-04-12 02:01:54] -rw------- 1 boinc boinc       428 Apr 11 23:53 workernode_map.json
[2026-04-12 02:01:54] drwx------ 5 boinc boinc      4096 Apr 11 23:53 pilot3
[2026-04-12 02:01:54] -rw------- 1 boinc boinc 191412749 Apr 12 02:00 HITS.49263191._046589.pool.root.1
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc       487 Apr 12 02:00 boinc_task_state.xml
[2026-04-12 02:01:54] -rw------- 1 boinc boinc      1017 Apr 12 02:00 memory_monitor_summary.json
[2026-04-12 02:01:54] -rw------- 1 boinc boinc    237671 Apr 12 02:00 log.49263191._046589.job.log.tgz.1
[2026-04-12 02:01:54] -rw------- 1 boinc boinc      6330 Apr 12 02:01 heartbeat_new.json
[2026-04-12 02:01:54] -rw------- 1 boinc boinc      6221 Apr 12 02:01 heartbeat.json
[2026-04-12 02:01:54] -rw------- 1 boinc boinc        95 Apr 12 02:01 pilot_heartbeat.json
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc        27 Apr 12 02:01 wrapper_checkpoint.txt
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc      8192 Apr 12 02:01 boinc_mmap_file
[2026-04-12 02:01:54] -rw------- 1 boinc boinc      4747 Apr 12 02:01 pilotlog.txt
[2026-04-12 02:01:54] -rw------- 1 boinc boinc    728479 Apr 12 02:01 log.49263191._046589.job.log.1
[2026-04-12 02:01:54] -rw------- 1 boinc boinc       357 Apr 12 02:01 output.list
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc       410 Apr 12 02:01 runtime_log
[2026-04-12 02:01:54] -rw------- 1 boinc boinc    983040 Apr 12 02:01 result.tar.gz
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc      8533 Apr 12 02:01 runtime_log.err
[2026-04-12 02:01:54] -rw------- 1 boinc boinc       662 Apr 12 02:01 14f6141acb8d.diag
[2026-04-12 02:01:54] -rw-r--r-- 1 boinc boinc     11303 Apr 12 02:01 stderr.txt
[2026-04-12 02:01:54] HITS file was successfully produced:
[2026-04-12 02:01:54] -rw------- 1 boinc boinc 191412749 Apr 12 02:00 shared/HITS.pool.root.1
[2026-04-12 02:01:54]  *** Contents of shared directory: ***
[2026-04-12 02:01:54] total 408764
[2026-04-12 02:01:54] -rw-r--r-- 2 boinc boinc 225494147 Apr 11 23:53 ATLAS.root_0
[2026-04-12 02:01:54] -rw-r--r-- 2 boinc boinc    656930 Apr 11 23:53 input.tar.gz
[2026-04-12 02:01:54] -rw-r--r-- 2 boinc boinc     15665 Apr 11 23:53 start_atlas.sh
[2026-04-12 02:01:54] -rw------- 1 boinc boinc 191412749 Apr 12 02:00 HITS.pool.root.1
[2026-04-12 02:01:54] -rw------- 1 boinc boinc    983040 Apr 12 02:01 result.tar.gz
02:01:55 (4021698): run_atlas exited; CPU time 14683.536193
02:01:55 (4021698): called boinc_finish(0)

</stderr_txt>
]]>

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