Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:39:37 (859830): wrapper (7.7.26015): starting
05:39:37 (859830): wrapper: running run_atlas (--nthreads 3)
[2026-04-12 05:39:37] Arguments: --nthreads 3
[2026-04-12 05:39:37] Threads: 3
[2026-04-12 05:39:37] Checking for CVMFS
[2026-04-12 05:39:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 05:39:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 05:39:38] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 05:39:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 05:39:38] 2.9.2.0 563676 1845 71632 158366 1 50 14206789 36864001 12 130560 0 1140323 99.989 68718 6898 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 05:39:38] CVMFS is ok
[2026-04-12 05:39:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 05:39:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 05:39:38] Further information can be found at the LHC@home message board.
[2026-04-12 05:39:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 05:39:38] Checking for apptainer binary...
[2026-04-12 05:39:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 05:39:38] Running /usr/bin/apptainer --version
[2026-04-12 05:39:38] apptainer version 1.4.1-1.1
[2026-04-12 05:39:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 05:39:38] thA361
[2026-04-12 05:39:38] apptainer works
[2026-04-12 05:39:38] Set ATHENA_PROC_NUMBER=3
[2026-04-12 05:39:38] Set ATHENA_CORE_NUMBER=3
[2026-04-12 05:39:38] Starting ATLAS job with PandaID=7086963163
[2026-04-12 05:39:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 07:04:01]  *** The last 200 lines of the pilot log: ***
[2026-04-12 07:04:01]  direct_access_lan=False
[2026-04-12 07:04:01]  direct_access_wan=False
[2026-04-12 07:04:01]  domain=
[2026-04-12 07:04:01]  filesize=228056
[2026-04-12 07:04:01]  filetype=log
[2026-04-12 07:04:01]  guid=2ad09548-e07a-43da-9cc0-2bd023c2c8b5
[2026-04-12 07:04:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-12 07:04:01]  is_altstaged=None
[2026-04-12 07:04:01]  is_tar=False
[2026-04-12 07:04:01]  lfn=log.49263191._046432.job.log.tgz.1
[2026-04-12 07:04:01]  mtime=0
[2026-04-12 07:04:01]  protocol_id=None
[2026-04-12 07:04:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-12 07:04:01]  replicas=None
[2026-04-12 07:04:01]  scope=mc23_13p6TeV
[2026-04-12 07:04:01]  status=None
[2026-04-12 07:04:01]  status_code=0
[2026-04-12 07:04:01]  storage_token=
[2026-04-12 07:04:01]  surl=/local/data/boinc/slots/0/PanDA_Pilot-7086963163/log.49263191._046432.job.log.tgz.1
[2026-04-12 07:04:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/cf/log.49263191._046432.job.log.tgz.1
[2026-04-12 07:04:01]  workdir=None
[2026-04-12 07:04:01] ]
[2026-04-12 07:04:01] 2026-04-12 05:02:57,488 | INFO     | transferring file log.49263191._046432.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-7086963163/log.49263191._046432.job.log.tgz.1 to /local/data/boinc/
[2026-04-12 07:04:01] 2026-04-12 05:02:57,488 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-7086963163/log.49263191._046432.job.log.tgz.1 /local/data/boinc/slots/0/log.49263191._0464
[2026-04-12 07:04:01] 2026-04-12 05:02:57,500 | INFO     | adding to output.list: log.49263191._046432.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e7/cf/log.49263191._046432.job.log.tg
[2026-04-12 07:04:01] 2026-04-12 05:02:57,500 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-12 07:04:01] 2026-04-12 05:02:57,500 | INFO     | summary of transferred files:
[2026-04-12 07:04:01] 2026-04-12 05:02:57,500 | INFO     |  -- lfn=log.49263191._046432.job.log.tgz.1, status_code=0, status=transferred
[2026-04-12 07:04:01] 2026-04-12 05:02:57,500 | INFO     | stage-out finished correctly
[2026-04-12 07:04:01] 2026-04-12 05:02:57,530 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-12 07:04:01] 2026-04-12 05:02:58,159 | INFO     | monitor loop #385: job 0:7086963163 is in state 'finished'
[2026-04-12 07:04:01] 2026-04-12 05:02:58,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,559 | INFO     | job 7086963163 has state=finished
[2026-04-12 07:04:01] 2026-04-12 05:02:58,559 | INFO     | preparing for final server update for job 7086963163 in state='finished'
[2026-04-12 07:04:01] 2026-04-12 05:02:58,559 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-7086963163/jobReport.json
[2026-04-12 07:04:01] 2026-04-12 05:02:58,561 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-04-12 07:04:01] 2026-04-12 05:02:58,561 | INFO     | this job has now completed (state=finished)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,561 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,561 | INFO     | log transfer has been attempted: DONE
[2026-04-12 07:04:01] 2026-04-12 05:02:58,561 | INFO     | job 7086963163 has finished - writing final server update
[2026-04-12 07:04:01] 2026-04-12 05:02:58,561 | INFO     | total number of processed events: 400 (read)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,563 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7086963163/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,563 | INFO     | extracted standard info from prmon json
[2026-04-12 07:04:01] 2026-04-12 05:02:58,563 | INFO     | extracted standard memory fields from prmon json
[2026-04-12 07:04:01] 2026-04-12 05:02:58,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-12 07:04:01] 2026-04-12 05:02:58,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-12 07:04:01] 2026-04-12 05:02:58,564 | INFO     | fitting pss+swap vs Time
[2026-04-12 07:04:01] 2026-04-12 05:02:58,564 | INFO     | sum of square deviations: 130793150.0
[2026-04-12 07:04:01] 2026-04-12 05:02:58,564 | INFO     | sum of deviations: -15239978432.000002
[2026-04-12 07:04:01] 2026-04-12 05:02:58,564 | INFO     | mean x (centered): 0.0
[2026-04-12 07:04:01] 2026-04-12 05:02:58,564 | INFO     | mean y: 2501253.04
[2026-04-12 07:04:01] 2026-04-12 05:02:58,564 | INFO     | intersect: 2501253.04
[2026-04-12 07:04:01] 2026-04-12 05:02:58,564 | INFO     | chi2: 0.10593578073733874
[2026-04-12 07:04:01] 2026-04-12 05:02:58,564 | INFO     | current memory leak: -116.52 B/s (using 75 data points, chi2=0.11)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | could have reported an average CPU frequency of 3710 MHz (6 samples)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | ..............................
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | . Timing measurements:
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | . get job = 0 s
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | . initial setup = 3 s
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | . payload setup = 4 s
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | . stage-in = 0 s
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | . payload execution = 4968 s
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | . stage-out = 0 s
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | . log creation = 0 s
[2026-04-12 07:04:01] 2026-04-12 05:02:58,565 | INFO     | ..............................
[2026-04-12 07:04:01] 2026-04-12 05:02:58,603 | INFO     | 
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | job summary report
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | --------------------------------------------------
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | PanDA job id: 7086963163
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | task id: 49263191
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | errors: (none)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | pilot state: finished 
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | transexitcode: 0
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | exeerrorcode: 0
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | exeerrordiag: 
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | exitcode: 0
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | exitmsg: OK
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | cpuconsumptiontime: 13958 s
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | nevents: 400
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | neventsw: 0
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | pid: 868300
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | pgrp: 868300
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | corecount: 3
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | event service: False
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | sizes: {0: 2279674, 1: 2281503, 11: 2281503, 4976: 2307977, 4977: 2317036, 4978: 2317174}
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | --------------------------------------------------
[2026-04-12 07:04:01] 2026-04-12 05:02:58,604 | INFO     | 
[2026-04-12 07:04:01] 2026-04-12 05:02:58,605 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,618 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | job 7086963163 has completed (purged errors)
[2026-04-12 07:04:01] 2026-04-12 05:02:58,619 | INFO     | overall cleanup function is called
[2026-04-12 07:04:01] 2026-04-12 05:02:59,625 | INFO     | --- collectZombieJob: --- 10, [868300]
[2026-04-12 07:04:01] 2026-04-12 05:02:59,626 | INFO     | zombie collector waiting for pid 868300
[2026-04-12 07:04:01] 2026-04-12 05:02:59,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 07:04:01] 2026-04-12 05:02:59,626 | INFO     | collected zombie processes
[2026-04-12 07:04:01] 2026-04-12 05:02:59,626 | INFO     | will attempt to kill all subprocesses of pid=868300
[2026-04-12 07:04:01] 2026-04-12 05:02:59,667 | INFO     | process IDs to be killed: [868300] (in reverse order)
[2026-04-12 07:04:01] 2026-04-12 05:02:59,691 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 07:04:01] 2026-04-12 05:02:59,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 07:04:01] 2026-04-12 05:02:59,692 | INFO     | did not find any defunct processes belonging to 868300
[2026-04-12 07:04:01] 2026-04-12 05:02:59,693 | INFO     | did not find any defunct processes belonging to 868300
[2026-04-12 07:04:01] 2026-04-12 05:02:59,693 | INFO     | Ready for new job
[2026-04-12 07:04:01] 2026-04-12 05:02:59,694 | INFO     | **************************************
[2026-04-12 07:04:01] 2026-04-12 05:02:59,694 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 07:04:01] 2026-04-12 05:02:59,694 | INFO     | **************************************
[2026-04-12 07:04:01] 2026-04-12 05:02:59,694 | INFO     | 
[2026-04-12 07:04:01] 2026-04-12 05:02:59,694 | INFO     | architecture information:
[2026-04-12 07:04:01] 2026-04-12 05:02:59,694 | INFO     | executing command: cat /etc/os-release
[2026-04-12 07:04:01] 2026-04-12 05:02:59,703 | INFO     | cat /etc/os-release:
[2026-04-12 07:04:01] NAME="CentOS Linux"
[2026-04-12 07:04:01] VERSION="7 (Core)"
[2026-04-12 07:04:01] ID="centos"
[2026-04-12 07:04:01] ID_LIKE="rhel fedora"
[2026-04-12 07:04:01] VERSION_ID="7"
[2026-04-12 07:04:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 07:04:01] ANSI_COLOR="0;31"
[2026-04-12 07:04:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 07:04:01] HOME_URL="https://www.centos.org/"
[2026-04-12 07:04:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 07:04:01] 
[2026-04-12 07:04:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 07:04:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 07:04:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 07:04:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 07:04:01] 
[2026-04-12 07:04:01] 2026-04-12 05:02:59,703 | INFO     | **************************************
[2026-04-12 07:04:01] 2026-04-12 05:03:00,206 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 07:04:01] 2026-04-12 05:03:00,220 | INFO     | sufficient remaining disk space (244936867840 B)
[2026-04-12 07:04:01] 2026-04-12 05:03:00,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 07:04:01] 2026-04-12 05:03:00,220 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 07:04:01] 2026-04-12 05:03:00,220 | INFO     | update_server=False
[2026-04-12 07:04:01] 2026-04-12 05:03:00,220 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 07:04:01] 2026-04-12 05:03:00,220 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 07:04:01] 2026-04-12 05:03:00,289 | INFO     | all data control threads have been joined
[2026-04-12 07:04:01] 2026-04-12 05:03:00,295 | INFO     | all job control threads have been joined
[2026-04-12 07:04:01] 2026-04-12 05:03:00,537 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 07:04:01] 2026-04-12 05:03:00,663 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-12 07:04:01] 2026-04-12 05:03:00,663 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-12 07:04:01] 2026-04-12 05:03:00,664 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 07:04:01] 2026-04-12 05:03:00,664 | INFO     | will abort loop
[2026-04-12 07:04:01] 2026-04-12 05:03:00,957 | INFO     | all payload control threads have been joined
[2026-04-12 07:04:01] 2026-04-12 05:03:01,226 | INFO     | [job] retrieve thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,226 | INFO     | [job] queue monitor thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,269 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,295 | INFO     | [data] control thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,300 | INFO     | [job] control thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,394 | INFO     | [data] copytool_in thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,444 | INFO     | [payload] validate_post thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,491 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,669 | INFO     | [job] job monitor thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:01,963 | INFO     | [payload] control thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:02,174 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:02,526 | INFO     | [payload] failed_post thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:02,542 | INFO     | [data] copytool_out thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:02,615 | INFO     | [job] validate thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:02,704 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:03,564 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 07:04:01] 2026-04-12 05:03:07,571 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 07:04:01] 2026-04-12 05:03:31,127 | INFO     | PID=863870 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-12 07:04:01] 2026-04-12 05:03:31,127 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 07:04:01] 2026-04-12 05:03:31,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 07:04:01] 2026-04-12 05:03:31,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 07:04:01] 2026-04-12 05:03:55,328 | INFO     | [monitor] cgroup control has ended
[2026-04-12 07:04:01] 2026-04-12 05:03:56,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140671269410624)>', '<ExcThread(monitor, started 140670995285760)>']
[2026-04-12 07:04:01] 2026-04-12 05:03:57,259 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 07:04:01] 2026-04-12 05:03:57,259 | INFO     | [monitor] control thread has ended
[2026-04-12 07:04:01] 2026-04-12 05:04:01,652 | INFO     | all workflow threads have been joined
[2026-04-12 07:04:01] 2026-04-12 05:04:01,652 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 07:04:01] 2026-04-12 05:04:01,652 | INFO     | traces error code: 0
[2026-04-12 07:04:01] 2026-04-12 05:04:01,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 07:04:01] 2026-04-12 05:04:01,702 [wrapper] ==== pilot stdout END ====
[2026-04-12 07:04:01] 2026-04-12 05:04:01,705 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 07:04:01] 2026-04-12 05:04:01,707 [wrapper] pilotpid: 863870
[2026-04-12 07:04:01] 2026-04-12 05:04:01,709 [wrapper] Pilot exit status: 0
[2026-04-12 07:04:01] 2026-04-12 05:04:01,717 [wrapper] pandaids: 7086963163
[2026-04-12 07:04:01] 2026-04-12 05:04:01,733 [wrapper] cleanup supervisor_pilot  873919 863871
[2026-04-12 07:04:01] 2026-04-12 05:04:01,735 [wrapper] Test setup, not cleaning
[2026-04-12 07:04:01] 2026-04-12 05:04:01,738 [wrapper] apfmon messages muted
[2026-04-12 07:04:01] 2026-04-12 05:04:01,740 [wrapper] ==== wrapper stdout END ====
[2026-04-12 07:04:01] 2026-04-12 05:04:01,742 [wrapper] ==== wrapper stderr END ====
[2026-04-12 07:04:01]  *** Error codes and diagnostics ***
[2026-04-12 07:04:01]     "exeErrorCode": 0,
[2026-04-12 07:04:01]     "pilotErrorCode": 0,
[2026-04-12 07:04:01]  *** Listing of results directory ***
[2026-04-12 07:04:01] total 410612
[2026-04-12 07:04:01] -rwx------ 1 boinc boinc     36322 Apr 11 11:31 runpilot2-wrapper.sh
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc    644190 Apr 11 11:34 pilot3.tar.gz
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc      5094 Apr 11 11:36 queuedata.json
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc       100 Apr 12 05:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 07:04:01] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 05:39 run_atlas
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc       105 Apr 12 05:39 job.xml
[2026-04-12 07:04:01] -rw-r--r-- 2 boinc boinc 222943224 Apr 12 05:39 EVNT.49263189._001041.pool.root.1
[2026-04-12 07:04:01] -rw-r--r-- 2 boinc boinc    656931 Apr 12 05:39 input.tar.gz
[2026-04-12 07:04:01] -rw-r--r-- 2 boinc boinc     15665 Apr 12 05:39 start_atlas.sh
[2026-04-12 07:04:01] drwxrwx--x 2 boinc boinc      4096 Apr 12 05:39 shared
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc         0 Apr 12 05:39 boinc_setup_complete
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc      6355 Apr 12 05:39 init_data.xml
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc         0 Apr 12 05:39 boinc_lockfile
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc      2578 Apr 12 05:39 pandaJob.out
[2026-04-12 07:04:01] -rw------- 1 boinc boinc    997751 Apr 12 05:39 agis_schedconf.cvmfs.json
[2026-04-12 07:04:01] -rw------- 1 boinc boinc   1511579 Apr 12 05:39 agis_ddmendpoints.agis.ALL.json
[2026-04-12 07:04:01] -rw------- 1 boinc boinc       427 Apr 12 05:39 workernode_map.json
[2026-04-12 07:04:01] drwx------ 5 boinc boinc      4096 Apr 12 05:39 pilot3
[2026-04-12 07:04:01] -rw------- 1 boinc boinc 192033086 Apr 12 07:02 HITS.49263191._046432.pool.root.1
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc       487 Apr 12 07:02 boinc_task_state.xml
[2026-04-12 07:04:01] -rw------- 1 boinc boinc      1020 Apr 12 07:02 memory_monitor_summary.json
[2026-04-12 07:04:01] -rw------- 1 boinc boinc    228056 Apr 12 07:02 log.49263191._046432.job.log.tgz.1
[2026-04-12 07:04:01] -rw------- 1 boinc boinc      6350 Apr 12 07:02 heartbeat_new.json
[2026-04-12 07:04:01] -rw------- 1 boinc boinc      6241 Apr 12 07:02 heartbeat.json
[2026-04-12 07:04:01] -rw------- 1 boinc boinc        95 Apr 12 07:03 pilot_heartbeat.json
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc      8192 Apr 12 07:03 boinc_mmap_file
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc        27 Apr 12 07:03 wrapper_checkpoint.txt
[2026-04-12 07:04:01] -rw------- 1 boinc boinc      4932 Apr 12 07:04 pilotlog.txt
[2026-04-12 07:04:01] -rw------- 1 boinc boinc    487737 Apr 12 07:04 log.49263191._046432.job.log.1
[2026-04-12 07:04:01] -rw------- 1 boinc boinc       357 Apr 12 07:04 output.list
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc       410 Apr 12 07:04 runtime_log
[2026-04-12 07:04:01] -rw------- 1 boinc boinc    737280 Apr 12 07:04 result.tar.gz
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc      8518 Apr 12 07:04 runtime_log.err
[2026-04-12 07:04:01] -rw------- 1 boinc boinc       657 Apr 12 07:04 14ee508568a6.diag
[2026-04-12 07:04:01] -rw-r--r-- 1 boinc boinc     20880 Apr 12 07:04 stderr.txt
[2026-04-12 07:04:01] HITS file was successfully produced:
[2026-04-12 07:04:01] -rw------- 1 boinc boinc 192033086 Apr 12 07:02 shared/HITS.pool.root.1
[2026-04-12 07:04:01]  *** Contents of shared directory: ***
[2026-04-12 07:04:01] total 406636
[2026-04-12 07:04:01] -rw-r--r-- 2 boinc boinc 222943224 Apr 12 05:39 ATLAS.root_0
[2026-04-12 07:04:01] -rw-r--r-- 2 boinc boinc    656931 Apr 12 05:39 input.tar.gz
[2026-04-12 07:04:01] -rw-r--r-- 2 boinc boinc     15665 Apr 12 05:39 start_atlas.sh
[2026-04-12 07:04:01] -rw------- 1 boinc boinc 192033086 Apr 12 07:02 HITS.pool.root.1
[2026-04-12 07:04:01] -rw------- 1 boinc boinc    737280 Apr 12 07:04 result.tar.gz
07:04:02 (859830): run_atlas exited; CPU time 13978.064179
07:04:02 (859830): called boinc_finish(0)

</stderr_txt>
]]>

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