Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:08:33 (4043790): wrapper (7.7.26015): starting
01:08:33 (4043790): wrapper: running run_atlas (--nthreads 4)
[2026-04-12 01:08:33] Arguments: --nthreads 4
[2026-04-12 01:08:33] Threads: 4
[2026-04-12 01:08:33] Checking for CVMFS
[2026-04-12 01:08:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 01:08:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 01:08:34] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 01:08:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 01:08:34] 2.9.2.0 3388428 3052 94668 158359 2 50 33846860 36864000 0 130560 0 2495639 99.990 130142 12262 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-12 01:08:34] CVMFS is ok
[2026-04-12 01:08:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 01:08:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 01:08:34] Further information can be found at the LHC@home message board.
[2026-04-12 01:08:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 01:08:34] Checking for apptainer binary...
[2026-04-12 01:08:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 01:08:34] Running /usr/bin/apptainer --version
[2026-04-12 01:08:34] apptainer version 1.4.1-1.1
[2026-04-12 01:08:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 01:08:34] magicA244a
[2026-04-12 01:08:34] apptainer works
[2026-04-12 01:08:34] Set ATHENA_PROC_NUMBER=4
[2026-04-12 01:08:34] Set ATHENA_CORE_NUMBER=4
[2026-04-12 01:08:34] Starting ATLAS job with PandaID=7086960371
[2026-04-12 01:08:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 02:33:10]  *** The last 200 lines of the pilot log: ***
[2026-04-12 02:33:10] 2026-04-12 00:32:39,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 02:33:10] 2026-04-12 00:32:39,199 | INFO     | collected zombie processes
[2026-04-12 02:33:10] 2026-04-12 00:32:39,199 | INFO     | will attempt to kill all subprocesses of pid=4052411
[2026-04-12 02:33:10] 2026-04-12 00:32:39,242 | INFO     | process IDs to be killed: [4052411] (in reverse order)
[2026-04-12 02:33:10] 2026-04-12 00:32:39,271 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 02:33:10] 2026-04-12 00:32:39,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 02:33:10] 2026-04-12 00:32:39,272 | INFO     | did not find any defunct processes belonging to 4052411
[2026-04-12 02:33:10] 2026-04-12 00:32:39,273 | INFO     | did not find any defunct processes belonging to 4052411
[2026-04-12 02:33:10] 2026-04-12 00:32:39,273 | INFO     | Ready for new job
[2026-04-12 02:33:10] 2026-04-12 00:32:39,274 | INFO     | **************************************
[2026-04-12 02:33:10] 2026-04-12 00:32:39,274 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 02:33:10] 2026-04-12 00:32:39,274 | INFO     | **************************************
[2026-04-12 02:33:10] 2026-04-12 00:32:39,274 | INFO     | 
[2026-04-12 02:33:10] 2026-04-12 00:32:39,275 | INFO     | architecture information:
[2026-04-12 02:33:10] 2026-04-12 00:32:39,275 | INFO     | executing command: cat /etc/os-release
[2026-04-12 02:33:10] 2026-04-12 00:32:39,285 | INFO     | cat /etc/os-release:
[2026-04-12 02:33:10] NAME="CentOS Linux"
[2026-04-12 02:33:10] VERSION="7 (Core)"
[2026-04-12 02:33:10] ID="centos"
[2026-04-12 02:33:10] ID_LIKE="rhel fedora"
[2026-04-12 02:33:10] VERSION_ID="7"
[2026-04-12 02:33:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 02:33:10] ANSI_COLOR="0;31"
[2026-04-12 02:33:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 02:33:10] HOME_URL="https://www.centos.org/"
[2026-04-12 02:33:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 02:33:10] 
[2026-04-12 02:33:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 02:33:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 02:33:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 02:33:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 02:33:10] 
[2026-04-12 02:33:10] 2026-04-12 00:32:39,285 | INFO     | **************************************
[2026-04-12 02:33:10] 2026-04-12 00:32:39,788 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 02:33:10] 2026-04-12 00:32:39,802 | INFO     | sufficient remaining disk space (325083725824 B)
[2026-04-12 02:33:10] 2026-04-12 00:32:39,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 02:33:10] 2026-04-12 00:32:39,803 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 02:33:10] 2026-04-12 00:32:39,803 | INFO     | update_server=False
[2026-04-12 02:33:10] 2026-04-12 00:32:39,803 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 02:33:10] 2026-04-12 00:32:39,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 02:33:10] 2026-04-12 00:32:39,803 | INFO     | aborting loop
[2026-04-12 02:33:10] 2026-04-12 00:32:39,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 02:33:10] 2026-04-12 00:32:39,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 02:33:10] 2026-04-12 00:32:40,585 | INFO     | all data control threads have been joined
[2026-04-12 02:33:10] 2026-04-12 00:32:40,733 | INFO     | all payload control threads have been joined
[2026-04-12 02:33:10] 2026-04-12 00:32:40,765 | INFO     | all job control threads have been joined
[2026-04-12 02:33:10] 2026-04-12 00:32:40,808 | INFO     | [job] retrieve thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:40,808 | INFO     | [job] queue monitor thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:40,809 | INFO     | [job] job monitor thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:40,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 02:33:10] 2026-04-12 00:32:41,361 | INFO     | [payload] failed_post thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:41,425 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:41,591 | INFO     | [data] control thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:41,739 | INFO     | [payload] control thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:41,766 | INFO     | [job] validate thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:41,769 | INFO     | [job] control thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:41,834 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:41,895 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:41,899 | INFO     | [payload] validate_post thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:42,088 | INFO     | [data] copytool_in thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:43,001 | INFO     | [data] copytool_out thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:43,810 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:50,579 | INFO     | job.realtimelogging is not enabled
[2026-04-12 02:33:10] 2026-04-12 00:32:51,585 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 02:33:10] 2026-04-12 00:32:51,763 | INFO     | [monitor] cgroup control has ended
[2026-04-12 02:33:10] 2026-04-12 00:32:53,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139707234150208)>', '<ExcThread(monitor, started 139706712954624)>']
[2026-04-12 02:33:10] 2026-04-12 00:32:58,325 | INFO     | all workflow threads have been joined
[2026-04-12 02:33:10] 2026-04-12 00:32:58,325 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 02:33:10] 2026-04-12 00:32:58,325 | INFO     | traces error code: 0
[2026-04-12 02:33:10] 2026-04-12 00:32:58,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 02:33:10] 2026-04-12 00:33:10,529 | INFO     | PID=4047905 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 02:33:10] 2026-04-12 00:33:10,529 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 02:33:10] 2026-04-12 00:33:10,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 02:33:10] 2026-04-12 00:33:10,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 02:33:10] 2026-04-12 00:33:10,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 02:33:10] 2026-04-12 00:33:10,530 | INFO     | [monitor] control thread has ended
[2026-04-12 02:33:10] 2026-04-12 00:33:10,580 [wrapper] ==== pilot stdout END ====
[2026-04-12 02:33:10] 2026-04-12 00:33:10,583 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 02:33:10] 2026-04-12 00:33:10,586 [wrapper] pilotpid: 4047905
[2026-04-12 02:33:10] 2026-04-12 00:33:10,588 [wrapper] Pilot exit status: 0
[2026-04-12 02:33:10] 2026-04-12 00:33:10,596 [wrapper] pandaids: 7086960371
[2026-04-12 02:33:10] 2026-04-12 00:33:10,613 [wrapper] cleanup supervisor_pilot 4058079 4047906
[2026-04-12 02:33:10] 2026-04-12 00:33:10,616 [wrapper] Test setup, not cleaning
[2026-04-12 02:33:10] 2026-04-12 00:33:10,619 [wrapper] apfmon messages muted
[2026-04-12 02:33:10] 2026-04-12 00:33:10,621 [wrapper] ==== wrapper stdout END ====
[2026-04-12 02:33:10] 2026-04-12 00:33:10,624 [wrapper] ==== wrapper stderr END ====
[2026-04-12 02:33:10]  *** Error codes and diagnostics ***
[2026-04-12 02:33:10]     "exeErrorCode": 0,
[2026-04-12 02:33:10]     "pilotErrorCode": 0,
[2026-04-12 02:33:10]  *** Listing of results directory ***
[2026-04-12 02:33:10] total 420824
[2026-04-12 02:33:10] -rwx------ 1 boinc boinc     36322 Apr 11 11:30 runpilot2-wrapper.sh
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc      5094 Apr 11 11:34 queuedata.json
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc    644190 Apr 11 11:34 pilot3.tar.gz
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc       100 Apr 12 01:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 02:33:10] -rwxr-xr-x 1 boinc boinc      7986 Apr 12 01:08 run_atlas
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc       105 Apr 12 01:08 job.xml
[2026-04-12 02:33:10] -rw-r--r-- 2 boinc boinc 222113217 Apr 12 01:08 EVNT.48629115._000055.pool.root.1
[2026-04-12 02:33:10] -rw-r--r-- 2 boinc boinc    656947 Apr 12 01:08 input.tar.gz
[2026-04-12 02:33:10] -rw-r--r-- 2 boinc boinc     15665 Apr 12 01:08 start_atlas.sh
[2026-04-12 02:33:10] drwxrwx--x 2 boinc boinc      4096 Apr 12 01:08 shared
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc         0 Apr 12 01:08 boinc_setup_complete
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc      6353 Apr 12 01:08 init_data.xml
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc         0 Apr 12 01:08 boinc_lockfile
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc      2626 Apr 12 01:08 pandaJob.out
[2026-04-12 02:33:10] -rw------- 1 boinc boinc    997799 Apr 12 01:08 agis_schedconf.cvmfs.json
[2026-04-12 02:33:10] -rw------- 1 boinc boinc   1511579 Apr 12 01:08 agis_ddmendpoints.agis.ALL.json
[2026-04-12 02:33:10] -rw------- 1 boinc boinc       427 Apr 12 01:08 workernode_map.json
[2026-04-12 02:33:10] drwx------ 5 boinc boinc      4096 Apr 12 01:08 pilot3
[2026-04-12 02:33:10] -rw------- 1 boinc boinc 203263044 Apr 12 02:32 HITS.49645815._001373.pool.root.1
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc       487 Apr 12 02:32 boinc_task_state.xml
[2026-04-12 02:33:10] -rw------- 1 boinc boinc      1014 Apr 12 02:32 memory_monitor_summary.json
[2026-04-12 02:33:10] -rw------- 1 boinc boinc    258675 Apr 12 02:32 log.49645815._001373.job.log.tgz.1
[2026-04-12 02:33:10] -rw------- 1 boinc boinc      6320 Apr 12 02:32 heartbeat_new.json
[2026-04-12 02:33:10] -rw------- 1 boinc boinc      6211 Apr 12 02:32 heartbeat.json
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc        27 Apr 12 02:33 wrapper_checkpoint.txt
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc      8192 Apr 12 02:33 boinc_mmap_file
[2026-04-12 02:33:10] -rw------- 1 boinc boinc       747 Apr 12 02:33 pilotlog.txt
[2026-04-12 02:33:10] -rw------- 1 boinc boinc        95 Apr 12 02:33 pilot_heartbeat.json
[2026-04-12 02:33:10] -rw------- 1 boinc boinc    491590 Apr 12 02:33 log.49645815._001373.job.log.1
[2026-04-12 02:33:10] -rw------- 1 boinc boinc       357 Apr 12 02:33 output.list
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc       410 Apr 12 02:33 runtime_log
[2026-04-12 02:33:10] -rw------- 1 boinc boinc    768000 Apr 12 02:33 result.tar.gz
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc      8538 Apr 12 02:33 runtime_log.err
[2026-04-12 02:33:10] -rw------- 1 boinc boinc       661 Apr 12 02:33 14b66b94394c.diag
[2026-04-12 02:33:10] -rw-r--r-- 1 boinc boinc     10293 Apr 12 02:33 stderr.txt
[2026-04-12 02:33:10] HITS file was successfully produced:
[2026-04-12 02:33:10] -rw------- 1 boinc boinc 203263044 Apr 12 02:32 shared/HITS.pool.root.1
[2026-04-12 02:33:10]  *** Contents of shared directory: ***
[2026-04-12 02:33:10] total 416828
[2026-04-12 02:33:10] -rw-r--r-- 2 boinc boinc 222113217 Apr 12 01:08 ATLAS.root_0
[2026-04-12 02:33:10] -rw-r--r-- 2 boinc boinc    656947 Apr 12 01:08 input.tar.gz
[2026-04-12 02:33:10] -rw-r--r-- 2 boinc boinc     15665 Apr 12 01:08 start_atlas.sh
[2026-04-12 02:33:10] -rw------- 1 boinc boinc 203263044 Apr 12 02:32 HITS.pool.root.1
[2026-04-12 02:33:10] -rw------- 1 boinc boinc    768000 Apr 12 02:33 result.tar.gz
02:33:11 (4043790): run_atlas exited; CPU time 18620.222764
02:33:11 (4043790): called boinc_finish(0)

</stderr_txt>
]]>

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