Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:11:14 (20546): wrapper (7.7.26015): starting
13:11:14 (20546): wrapper: running run_atlas (--nthreads 8)
[2026-04-11 13:11:14] Arguments: --nthreads 8
[2026-04-11 13:11:14] Threads: 8
[2026-04-11 13:11:14] Checking for CVMFS
[2026-04-11 13:11:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 13:11:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 13:11:14] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 13:11:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 13:11:14] 2.11.0.0 4149 261920 110280 158342 0 1 2634285 4096000 0 130560 3 19680093 99.622 16281180 396 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-04-11 13:11:14] CVMFS is ok
[2026-04-11 13:11:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 13:11:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 13:11:14] Further information can be found at the LHC@home message board.
[2026-04-11 13:11:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 13:11:14] Checking for apptainer binary...
[2026-04-11 13:11:14] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-04-11 13:11:14] apptainer is not installed, using version from CVMFS
[2026-04-11 13:11:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 13:12:41] WARNING: Environment variable TMPDIR already has value [/tmp/job_11488061/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node038
[2026-04-11 13:12:41] apptainer works
[2026-04-11 13:12:41] Set ATHENA_PROC_NUMBER=8
[2026-04-11 13:12:41] Set ATHENA_CORE_NUMBER=8
[2026-04-11 13:12:41] Starting ATLAS job with PandaID=7086956953
[2026-04-11 13:12:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11488061/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 14:36:16]  *** The last 200 lines of the pilot log: ***
[2026-04-11 14:36:16]  guid=99a1e495-f80d-4c6a-85a7-126e27e06bb2
[2026-04-11 14:36:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-11 14:36:16]  is_altstaged=None
[2026-04-11 14:36:16]  is_tar=False
[2026-04-11 14:36:16]  lfn=log.49263191._044897.job.log.tgz.1
[2026-04-11 14:36:16]  mtime=0
[2026-04-11 14:36:16]  protocol_id=None
[2026-04-11 14:36:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-11 14:36:16]  replicas=None
[2026-04-11 14:36:16]  scope=mc23_13p6TeV
[2026-04-11 14:36:16]  status=None
[2026-04-11 14:36:16]  status_code=0
[2026-04-11 14:36:16]  storage_token=
[2026-04-11 14:36:16]  surl=/tmp/job_11488061/atlas/pilot/slots/0/PanDA_Pilot-7086956953/log.49263191._044897.job.log.tgz.1
[2026-04-11 14:36:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/1d/log.49263191._044897.job.log.tgz.1
[2026-04-11 14:36:16]  workdir=None
[2026-04-11 14:36:16] ]
[2026-04-11 14:36:16] 2026-04-11 12:35:20,981 | INFO     | transferring file log.49263191._044897.job.log.tgz.1 from /tmp/job_11488061/atlas/pilot/slots/0/PanDA_Pilot-7086956953/log.49263191._044897.job.log.tgz.1 to /tmp/j
[2026-04-11 14:36:16] 2026-04-11 12:35:20,981 | INFO     | executing command: /usr/bin/env mv /tmp/job_11488061/atlas/pilot/slots/0/PanDA_Pilot-7086956953/log.49263191._044897.job.log.tgz.1 /tmp/job_11488061/atlas/pilot/sl
[2026-04-11 14:36:16] 2026-04-11 12:35:20,989 | INFO     | adding to output.list: log.49263191._044897.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/1d/log.49263191._044897.job.log.tg
[2026-04-11 14:36:16] 2026-04-11 12:35:20,989 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-11 14:36:16] 2026-04-11 12:35:20,989 | INFO     | summary of transferred files:
[2026-04-11 14:36:16] 2026-04-11 12:35:20,989 | INFO     |  -- lfn=log.49263191._044897.job.log.tgz.1, status_code=0, status=transferred
[2026-04-11 14:36:16] 2026-04-11 12:35:20,990 | INFO     | stage-out finished correctly
[2026-04-11 14:36:16] 2026-04-11 12:35:21,955 | INFO     | monitor loop #416: job 0:7086956953 is in state 'finished'
[2026-04-11 14:36:16] 2026-04-11 12:35:21,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-11 14:36:16] 2026-04-11 12:35:22,576 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-11 14:36:16] 2026-04-11 12:35:24,181 | INFO     | job 7086956953 has state=finished
[2026-04-11 14:36:16] 2026-04-11 12:35:24,181 | INFO     | preparing for final server update for job 7086956953 in state='finished'
[2026-04-11 14:36:16] 2026-04-11 12:35:24,458 | INFO     | monitor loop #417: job 0:7086956953 is in state 'finished'
[2026-04-11 14:36:16] 2026-04-11 12:35:24,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,734 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,734 | INFO     | reading metadata from: /tmp/job_11488061/atlas/pilot/slots/0/PanDA_Pilot-7086956953/jobReport.json
[2026-04-11 14:36:16] 2026-04-11 12:35:24,735 | INFO     | added worker_node to metadata from /tmp/job_11488061/atlas/pilot/slots/0/workernode_map.json
[2026-04-11 14:36:16] 2026-04-11 12:35:24,735 | INFO     | this job has now completed (state=finished)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,735 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,735 | INFO     | log transfer has been attempted: DONE
[2026-04-11 14:36:16] 2026-04-11 12:35:24,735 | INFO     | job 7086956953 has finished - writing final server update
[2026-04-11 14:36:16] 2026-04-11 12:35:24,736 | INFO     | total number of processed events: 400 (read)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,753 | INFO     | using path: /tmp/job_11488061/atlas/pilot/slots/0/PanDA_Pilot-7086956953/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,753 | INFO     | extracted standard info from prmon json
[2026-04-11 14:36:16] 2026-04-11 12:35:24,753 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 14:36:16] 2026-04-11 12:35:24,754 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 14:36:16] 2026-04-11 12:35:24,754 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 14:36:16] 2026-04-11 12:35:24,754 | INFO     | fitting pss+swap vs Time
[2026-04-11 14:36:16] 2026-04-11 12:35:24,754 | INFO     | sum of square deviations: 101843770.0
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | sum of deviations: 64563108026.99999
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | mean x (centered): 0.0
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | mean y: 1898215.536231884
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | intersect: 1898215.536231884
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | chi2: 9.488456039258173
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | current memory leak: 633.94 B/s (using 69 data points, chi2=9.49)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | could have reported an average CPU frequency of 2395 MHz (6 samples)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | ..............................
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | . Timing measurements:
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | . get job = 0 s
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | . initial setup = 13 s
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | . payload setup = 176 s
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | . stage-in = 0 s
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | . payload execution = 4635 s
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | . stage-out = 0 s
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | . log creation = 0 s
[2026-04-11 14:36:16] 2026-04-11 12:35:24,755 | INFO     | ..............................
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | 
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | job summary report
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | --------------------------------------------------
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | PanDA job id: 7086956953
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | task id: 49263191
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | errors: (none)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | pilot state: finished 
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | transexitcode: 0
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | exeerrorcode: 0
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | exeerrordiag: 
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | exitcode: 0
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | exitmsg: OK
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | cpuconsumptiontime: 20854 s
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | nevents: 400
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | neventsw: 0
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | pid: 17450
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | pgrp: 17450
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | corecount: 8
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | event service: False
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | sizes: {0: 2279628, 1: 2281624, 4815: 2307813, 4816: 2316841, 4818: 2316897, 4820: 2317091}
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | --------------------------------------------------
[2026-04-11 14:36:16] 2026-04-11 12:35:24,803 | INFO     | 
[2026-04-11 14:36:16] 2026-04-11 12:35:24,804 | INFO     | executing command: ls -lF /tmp/job_11488061/atlas/pilot/slots/0
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,814 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 14:36:16] 2026-04-11 12:35:24,815 | INFO     | job 7086956953 has completed (purged errors)
[2026-04-11 14:36:16] 2026-04-11 12:35:24,815 | INFO     | overall cleanup function is called
[2026-04-11 14:36:16] 2026-04-11 12:35:25,821 | INFO     | --- collectZombieJob: --- 10, [17450]
[2026-04-11 14:36:16] 2026-04-11 12:35:25,821 | INFO     | zombie collector waiting for pid 17450
[2026-04-11 14:36:16] 2026-04-11 12:35:25,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 14:36:16] 2026-04-11 12:35:25,821 | INFO     | collected zombie processes
[2026-04-11 14:36:16] 2026-04-11 12:35:25,821 | INFO     | will attempt to kill all subprocesses of pid=17450
[2026-04-11 14:36:16] 2026-04-11 12:35:25,928 | INFO     | process IDs to be killed: [17450] (in reverse order)
[2026-04-11 14:36:16] 2026-04-11 12:35:25,969 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 14:36:16] 2026-04-11 12:35:25,969 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 14:36:16] 2026-04-11 12:35:25,973 | INFO     | did not find any defunct processes belonging to 17450
[2026-04-11 14:36:16] 2026-04-11 12:35:25,977 | INFO     | did not find any defunct processes belonging to 17450
[2026-04-11 14:36:16] 2026-04-11 12:35:25,977 | INFO     | Ready for new job
[2026-04-11 14:36:16] 2026-04-11 12:35:25,977 | INFO     | **************************************
[2026-04-11 14:36:16] 2026-04-11 12:35:25,977 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 14:36:16] 2026-04-11 12:35:25,977 | INFO     | **************************************
[2026-04-11 14:36:16] 2026-04-11 12:35:25,977 | INFO     | 
[2026-04-11 14:36:16] 2026-04-11 12:35:25,992 | INFO     | architecture information:
[2026-04-11 14:36:16] 2026-04-11 12:35:25,992 | INFO     | executing command: cat /etc/os-release
[2026-04-11 14:36:16] 2026-04-11 12:35:25,999 | INFO     | cat /etc/os-release:
[2026-04-11 14:36:16] NAME="CentOS Linux"
[2026-04-11 14:36:16] VERSION="7 (Core)"
[2026-04-11 14:36:16] ID="centos"
[2026-04-11 14:36:16] ID_LIKE="rhel fedora"
[2026-04-11 14:36:16] VERSION_ID="7"
[2026-04-11 14:36:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 14:36:16] ANSI_COLOR="0;31"
[2026-04-11 14:36:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 14:36:16] HOME_URL="https://www.centos.org/"
[2026-04-11 14:36:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 14:36:16] 
[2026-04-11 14:36:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 14:36:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 14:36:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 14:36:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 14:36:16] 
[2026-04-11 14:36:16] 2026-04-11 12:35:26,000 | INFO     | **************************************
[2026-04-11 14:36:16] 2026-04-11 12:35:26,502 | INFO     | executing command: df -mP /tmp/job_11488061/atlas/pilot/slots/0
[2026-04-11 14:36:16] 2026-04-11 12:35:26,508 | INFO     | sufficient remaining disk space (224371146752 B)
[2026-04-11 14:36:16] 2026-04-11 12:35:26,508 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 14:36:16] 2026-04-11 12:35:26,509 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 14:36:16] 2026-04-11 12:35:26,509 | INFO     | update_server=False
[2026-04-11 14:36:16] 2026-04-11 12:35:26,509 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 14:36:16] 2026-04-11 12:35:26,509 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 14:36:16] 2026-04-11 12:35:26,528 | INFO     | all data control threads have been joined
[2026-04-11 14:36:16] 2026-04-11 12:35:26,547 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 14:36:16] 2026-04-11 12:35:26,960 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-11 14:36:16] 2026-04-11 12:35:26,960 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-11 14:36:16] 2026-04-11 12:35:26,960 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 14:36:16] 2026-04-11 12:35:26,961 | INFO     | will abort loop
[2026-04-11 14:36:16] 2026-04-11 12:35:27,173 | INFO     | all payload control threads have been joined
[2026-04-11 14:36:16] 2026-04-11 12:35:27,514 | INFO     | [job] retrieve thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:27,514 | INFO     | [job] queue monitor thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:27,533 | INFO     | [data] control thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:27,559 | INFO     | [job] validate thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:27,573 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:27,640 | INFO     | [payload] failed_post thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:27,715 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:27,808 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:27,855 | INFO     | all job control threads have been joined
[2026-04-11 14:36:16] 2026-04-11 12:35:27,966 | INFO     | [job] job monitor thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:28,022 | INFO     | [payload] validate_post thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:28,025 | INFO     | [data] copytool_in thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:28,178 | INFO     | [payload] control thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:28,552 | INFO     | [data] copytool_out thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:28,628 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 14:36:16] 2026-04-11 12:35:28,860 | INFO     | [job] control thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:32,633 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:36,565 | INFO     | job.realtimelogging is not enabled
[2026-04-11 14:36:16] 2026-04-11 12:35:37,570 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 14:36:16] 2026-04-11 12:35:57,641 | INFO     | PID=16103 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-11 14:36:16] 2026-04-11 12:35:57,641 | INFO     | .. there are 5 such processes running
[2026-04-11 14:36:16] 2026-04-11 12:35:57,642 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 14:36:16] 2026-04-11 12:35:57,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 14:36:16] 2026-04-11 12:35:57,642 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 14:36:16] 2026-04-11 12:36:10,436 | INFO     | [monitor] cgroup control has ended
[2026-04-11 14:36:16] 2026-04-11 12:36:11,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-04-11 14:36:16] 2026-04-11 12:36:11,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 14:36:16] 2026-04-11 12:36:11,712 | INFO     | [monitor] control thread has ended
[2026-04-11 14:36:16] 2026-04-11 12:36:16,723 | INFO     | all workflow threads have been joined
[2026-04-11 14:36:16] 2026-04-11 12:36:16,723 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 14:36:16] 2026-04-11 12:36:16,723 | INFO     | traces error code: 0
[2026-04-11 14:36:16] 2026-04-11 12:36:16,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 14:36:16] 2026-04-11 12:36:16,774 [wrapper] ==== pilot stdout END ====
[2026-04-11 14:36:16] 2026-04-11 12:36:16,776 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 14:36:16] 2026-04-11 12:36:16,777 [wrapper] pilotpid: 16103
[2026-04-11 14:36:16] 2026-04-11 12:36:16,778 [wrapper] Pilot exit status: 0
[2026-04-11 14:36:16] 2026-04-11 12:36:16,782 [wrapper] pandaids: 7086956953
[2026-04-11 14:36:16] 2026-04-11 12:36:16,803 [wrapper] cleanup supervisor_pilot 15674 16105
[2026-04-11 14:36:16] 2026-04-11 12:36:16,805 [wrapper] Test setup, not cleaning
[2026-04-11 14:36:16] 2026-04-11 12:36:16,806 [wrapper] apfmon messages muted
[2026-04-11 14:36:16] 2026-04-11 12:36:16,807 [wrapper] ==== wrapper stdout END ====
[2026-04-11 14:36:16] 2026-04-11 12:36:16,808 [wrapper] ==== wrapper stderr END ====
[2026-04-11 14:36:16]  *** Error codes and diagnostics ***
[2026-04-11 14:36:16]     "exeErrorCode": 0,
[2026-04-11 14:36:16]     "pilotErrorCode": 0,
[2026-04-11 14:36:16]  *** Listing of results directory ***
[2026-04-11 14:36:16] total 417024
[2026-04-11 14:36:16] -rwx------ 1 mf493845 unix-user     36322 Apr 11 08:47 runpilot2-wrapper.sh
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user    644190 Apr 11 08:47 pilot3.tar.gz
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      5094 Apr 11 08:48 queuedata.json
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user       100 Apr 11 12:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 14:36:16] -rwxr-xr-x 1 mf493845 unix-user      7986 Apr 11 12:14 run_atlas
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user       105 Apr 11 12:14 job.xml
[2026-04-11 14:36:16] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 11 13:11 start_atlas.sh
[2026-04-11 14:36:16] drwxrwx--x 2 mf493845 unix-user       100 Apr 11 13:11 shared
[2026-04-11 14:36:16] -rw-r--r-- 2 mf493845 unix-user    656932 Apr 11 13:11 input.tar.gz
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      6306 Apr 11 13:11 init_data.xml
[2026-04-11 14:36:16] -rw-r--r-- 2 mf493845 unix-user 223045548 Apr 11 13:11 EVNT.49263189._000978.pool.root.1
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user         0 Apr 11 13:11 boinc_setup_complete
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      8192 Apr 11 13:11 boinc_mmap_file
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user         0 Apr 11 13:11 boinc_lockfile
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      2577 Apr 11 13:12 pandaJob.out
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user    997836 Apr 11 13:14 agis_schedconf.cvmfs.json
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user   1511579 Apr 11 13:14 agis_ddmendpoints.agis.ALL.json
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user       420 Apr 11 13:14 workernode_map.json
[2026-04-11 14:36:16] drwx------ 5 mf493845 unix-user       480 Apr 11 13:15 pilot3
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user 198332457 Apr 11 14:34 HITS.49263191._044897.pool.root.1
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      1015 Apr 11 14:35 memory_monitor_summary.json
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user    315154 Apr 11 14:35 log.49263191._044897.job.log.tgz.1
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      6345 Apr 11 14:35 heartbeat_new.json
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      6235 Apr 11 14:35 heartbeat.json
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user        95 Apr 11 14:35 pilot_heartbeat.json
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      5088 Apr 11 14:36 pilotlog.txt
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user    494924 Apr 11 14:36 log.49263191._044897.job.log.1
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user       357 Apr 11 14:36 output.list
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user       410 Apr 11 14:36 runtime_log
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user    829440 Apr 11 14:36 result.tar.gz
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user       643 Apr 11 14:36 ee64250bb6e0.diag
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user      8841 Apr 11 14:36 runtime_log.err
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user     21790 Apr 11 14:36 stderr.txt
[2026-04-11 14:36:16] HITS file was successfully produced:
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user 198332457 Apr 11 14:34 shared/HITS.pool.root.1
[2026-04-11 14:36:16]  *** Contents of shared directory: ***
[2026-04-11 14:36:16] total 412980
[2026-04-11 14:36:16] -rw-r--r-- 2 mf493845 unix-user     15665 Apr 11 13:11 start_atlas.sh
[2026-04-11 14:36:16] -rw-r--r-- 2 mf493845 unix-user    656932 Apr 11 13:11 input.tar.gz
[2026-04-11 14:36:16] -rw-r--r-- 2 mf493845 unix-user 223045548 Apr 11 13:11 ATLAS.root_0
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user 198332457 Apr 11 14:34 HITS.pool.root.1
[2026-04-11 14:36:16] -rw------- 1 mf493845 unix-user    829440 Apr 11 14:36 result.tar.gz
14:36:18 (20546): run_atlas exited; CPU time 20921.358159
14:36:18 (20546): called boinc_finish(0)

</stderr_txt>
]]>

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