Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:33:04 (1594323): wrapper (7.7.26015): starting
23:33:04 (1594323): wrapper: running run_atlas (--nthreads 3)
[2026-04-11 23:33:04] Arguments: --nthreads 3
[2026-04-11 23:33:04] Threads: 3
[2026-04-11 23:33:04] Checking for CVMFS
[2026-04-11 23:33:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 23:33:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 23:33:05] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 23:33:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 23:33:05] 2.9.2.0 1148888 2798 78824 158357 3 49 33046618 36864000 0 130560 0 1706658 99.988 109826 14773 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 23:33:05] CVMFS is ok
[2026-04-11 23:33:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 23:33:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 23:33:05] Further information can be found at the LHC@home message board.
[2026-04-11 23:33:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 23:33:05] Checking for apptainer binary...
[2026-04-11 23:33:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 23:33:05] Running /usr/bin/apptainer --version
[2026-04-11 23:33:05] apptainer version 1.4.1-1.1
[2026-04-11 23:33:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 23:33:05] belleA253
[2026-04-11 23:33:05] apptainer works
[2026-04-11 23:33:05] Set ATHENA_PROC_NUMBER=3
[2026-04-11 23:33:05] Set ATHENA_CORE_NUMBER=3
[2026-04-11 23:33:05] Starting ATLAS job with PandaID=7086960322
[2026-04-11 23:33:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 01:15:30]  *** The last 200 lines of the pilot log: ***
[2026-04-12 01:15:30] 2026-04-11 23:14:46,734 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,748 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,748 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,748 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,748 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 01:15:30] 2026-04-11 23:14:46,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,748 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 01:15:30] 2026-04-11 23:14:46,748 | INFO     | job 7086960322 has completed (purged errors)
[2026-04-12 01:15:30] 2026-04-11 23:14:46,748 | INFO     | overall cleanup function is called
[2026-04-12 01:15:30] 2026-04-11 23:14:47,754 | INFO     | --- collectZombieJob: --- 10, [1602814]
[2026-04-12 01:15:30] 2026-04-11 23:14:47,755 | INFO     | zombie collector waiting for pid 1602814
[2026-04-12 01:15:30] 2026-04-11 23:14:47,755 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 01:15:30] 2026-04-11 23:14:47,755 | INFO     | collected zombie processes
[2026-04-12 01:15:30] 2026-04-11 23:14:47,755 | INFO     | will attempt to kill all subprocesses of pid=1602814
[2026-04-12 01:15:30] 2026-04-11 23:14:47,796 | INFO     | process IDs to be killed: [1602814] (in reverse order)
[2026-04-12 01:15:30] 2026-04-11 23:14:47,821 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 01:15:30] 2026-04-11 23:14:47,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 01:15:30] 2026-04-11 23:14:47,822 | INFO     | did not find any defunct processes belonging to 1602814
[2026-04-12 01:15:30] 2026-04-11 23:14:47,823 | INFO     | did not find any defunct processes belonging to 1602814
[2026-04-12 01:15:30] 2026-04-11 23:14:47,823 | INFO     | Ready for new job
[2026-04-12 01:15:30] 2026-04-11 23:14:47,824 | INFO     | **************************************
[2026-04-12 01:15:30] 2026-04-11 23:14:47,824 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 01:15:30] 2026-04-11 23:14:47,824 | INFO     | **************************************
[2026-04-12 01:15:30] 2026-04-11 23:14:47,824 | INFO     | 
[2026-04-12 01:15:30] 2026-04-11 23:14:47,825 | INFO     | architecture information:
[2026-04-12 01:15:30] 2026-04-11 23:14:47,825 | INFO     | executing command: cat /etc/os-release
[2026-04-12 01:15:30] 2026-04-11 23:14:47,834 | INFO     | cat /etc/os-release:
[2026-04-12 01:15:30] NAME="CentOS Linux"
[2026-04-12 01:15:30] VERSION="7 (Core)"
[2026-04-12 01:15:30] ID="centos"
[2026-04-12 01:15:30] ID_LIKE="rhel fedora"
[2026-04-12 01:15:30] VERSION_ID="7"
[2026-04-12 01:15:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 01:15:30] ANSI_COLOR="0;31"
[2026-04-12 01:15:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 01:15:30] HOME_URL="https://www.centos.org/"
[2026-04-12 01:15:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 01:15:30] 
[2026-04-12 01:15:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 01:15:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 01:15:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 01:15:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 01:15:30] 
[2026-04-12 01:15:30] 2026-04-11 23:14:47,834 | INFO     | **************************************
[2026-04-12 01:15:30] 2026-04-11 23:14:48,337 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-12 01:15:30] 2026-04-11 23:14:48,349 | INFO     | sufficient remaining disk space (371501039616 B)
[2026-04-12 01:15:30] 2026-04-11 23:14:48,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 01:15:30] 2026-04-11 23:14:48,350 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 01:15:30] 2026-04-11 23:14:48,350 | INFO     | update_server=False
[2026-04-12 01:15:30] 2026-04-11 23:14:48,350 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 01:15:30] 2026-04-11 23:14:48,350 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 01:15:30] 2026-04-11 23:14:48,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 01:15:30] 2026-04-11 23:14:48,989 | INFO     | all data control threads have been joined
[2026-04-12 01:15:30] 2026-04-11 23:14:49,053 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 01:15:30] 2026-04-11 23:14:49,054 | INFO     | aborting loop
[2026-04-12 01:15:30] 2026-04-11 23:14:49,319 | INFO     | all job control threads have been joined
[2026-04-12 01:15:30] 2026-04-11 23:14:49,355 | INFO     | [job] retrieve thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:49,356 | INFO     | [job] queue monitor thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:49,459 | INFO     | job.realtimelogging is not enabled
[2026-04-12 01:15:30] 2026-04-11 23:14:49,648 | INFO     | all payload control threads have been joined
[2026-04-12 01:15:30] 2026-04-11 23:14:49,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 01:15:30] 2026-04-11 23:14:49,722 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:49,949 | INFO     | [payload] validate_post thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:49,995 | INFO     | [data] control thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,059 | INFO     | [job] job monitor thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,243 | INFO     | [payload] failed_post thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,325 | INFO     | [job] control thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,447 | INFO     | [job] validate thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,465 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,520 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,533 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,592 | INFO     | [data] copytool_in thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:50,653 | INFO     | [payload] control thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:51,685 | INFO     | [data] copytool_out thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:14:52,357 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 01:15:30] 2026-04-11 23:15:19,357 | INFO     | PID=1598373 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 01:15:30] 2026-04-11 23:15:19,357 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 01:15:30] 2026-04-11 23:15:19,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 01:15:30] 2026-04-11 23:15:19,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 01:15:30] 2026-04-11 23:15:25,060 | INFO     | [monitor] cgroup control has ended
[2026-04-12 01:15:30] 2026-04-11 23:15:25,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127488436032)>', '<ExcThread(monitor, started 140126864799488)>']
[2026-04-12 01:15:30] 2026-04-11 23:15:25,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 01:15:30] 2026-04-11 23:15:25,389 | INFO     | [monitor] control thread has ended
[2026-04-12 01:15:30] 2026-04-11 23:15:30,130 | INFO     | all workflow threads have been joined
[2026-04-12 01:15:30] 2026-04-11 23:15:30,130 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 01:15:30] 2026-04-11 23:15:30,131 | INFO     | traces error code: 0
[2026-04-12 01:15:30] 2026-04-11 23:15:30,131 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 01:15:30] 2026-04-11 23:15:30,183 [wrapper] ==== pilot stdout END ====
[2026-04-12 01:15:30] 2026-04-11 23:15:30,185 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 01:15:30] 2026-04-11 23:15:30,188 [wrapper] pilotpid: 1598373
[2026-04-12 01:15:30] 2026-04-11 23:15:30,190 [wrapper] Pilot exit status: 0
[2026-04-12 01:15:30] 2026-04-11 23:15:30,198 [wrapper] pandaids: 7086960322
[2026-04-12 01:15:30] 2026-04-11 23:15:30,215 [wrapper] cleanup supervisor_pilot 1608455 1598374
[2026-04-12 01:15:30] 2026-04-11 23:15:30,217 [wrapper] Test setup, not cleaning
[2026-04-12 01:15:30] 2026-04-11 23:15:30,220 [wrapper] apfmon messages muted
[2026-04-12 01:15:30] 2026-04-11 23:15:30,222 [wrapper] ==== wrapper stdout END ====
[2026-04-12 01:15:30] 2026-04-11 23:15:30,225 [wrapper] ==== wrapper stderr END ====
[2026-04-12 01:15:30]  *** Error codes and diagnostics ***
[2026-04-12 01:15:30]     "exeErrorCode": 0,
[2026-04-12 01:15:30]     "pilotErrorCode": 0,
[2026-04-12 01:15:30]  *** Listing of results directory ***
[2026-04-12 01:15:30] total 415132
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc    650909 Apr  3 16:16 pilot3.tar.gz
[2026-04-12 01:15:30] -rwx------ 1 boinc boinc     36322 Apr 11 10:50 runpilot2-wrapper.sh
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc      5094 Apr 11 11:07 queuedata.json
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc       100 Apr 11 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 01:15:30] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 23:33 run_atlas
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc       105 Apr 11 23:33 job.xml
[2026-04-12 01:15:30] -rw-r--r-- 2 boinc boinc 226478421 Apr 11 23:33 EVNT.48629115._000053.pool.root.1
[2026-04-12 01:15:30] -rw-r--r-- 2 boinc boinc    664489 Apr 11 23:33 input.tar.gz
[2026-04-12 01:15:30] -rw-r--r-- 2 boinc boinc     15665 Apr 11 23:33 start_atlas.sh
[2026-04-12 01:15:30] drwxrwx--x 2 boinc boinc      4096 Apr 11 23:33 shared
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc         0 Apr 11 23:33 boinc_setup_complete
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc      6363 Apr 11 23:33 init_data.xml
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc         0 Apr 11 23:33 boinc_lockfile
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc      2626 Apr 11 23:33 pandaJob.out
[2026-04-12 01:15:30] -rw------- 1 boinc boinc    997815 Apr 11 23:33 agis_schedconf.cvmfs.json
[2026-04-12 01:15:30] -rw------- 1 boinc boinc   1511579 Apr 11 23:33 agis_ddmendpoints.agis.ALL.json
[2026-04-12 01:15:30] -rw------- 1 boinc boinc       426 Apr 11 23:33 workernode_map.json
[2026-04-12 01:15:30] drwx------ 5 boinc boinc      4096 Apr 11 23:33 pilot3
[2026-04-12 01:15:30] -rw------- 1 boinc boinc 192865507 Apr 12 01:14 HITS.49645815._001324.pool.root.1
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc       487 Apr 12 01:14 boinc_task_state.xml
[2026-04-12 01:15:30] -rw------- 1 boinc boinc      1016 Apr 12 01:14 memory_monitor_summary.json
[2026-04-12 01:15:30] -rw------- 1 boinc boinc        95 Apr 12 01:14 pilot_heartbeat.json
[2026-04-12 01:15:30] -rw------- 1 boinc boinc    255019 Apr 12 01:14 log.49645815._001324.job.log.tgz.1
[2026-04-12 01:15:30] -rw------- 1 boinc boinc      6326 Apr 12 01:14 heartbeat_new.json
[2026-04-12 01:15:30] -rw------- 1 boinc boinc      6217 Apr 12 01:14 heartbeat.json
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc        27 Apr 12 01:15 wrapper_checkpoint.txt
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc      8192 Apr 12 01:15 boinc_mmap_file
[2026-04-12 01:15:30] -rw------- 1 boinc boinc      4819 Apr 12 01:15 pilotlog.txt
[2026-04-12 01:15:30] -rw------- 1 boinc boinc    588017 Apr 12 01:15 log.49645815._001324.job.log.1
[2026-04-12 01:15:30] -rw------- 1 boinc boinc       357 Apr 12 01:15 output.list
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc       410 Apr 12 01:15 runtime_log
[2026-04-12 01:15:30] -rw------- 1 boinc boinc    860160 Apr 12 01:15 result.tar.gz
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc      8533 Apr 12 01:15 runtime_log.err
[2026-04-12 01:15:30] -rw------- 1 boinc boinc       660 Apr 12 01:15 0b40aedd5541.diag
[2026-04-12 01:15:30] -rw-r--r-- 1 boinc boinc     12819 Apr 12 01:15 stderr.txt
[2026-04-12 01:15:30] HITS file was successfully produced:
[2026-04-12 01:15:30] -rw------- 1 boinc boinc 192865507 Apr 12 01:14 shared/HITS.pool.root.1
[2026-04-12 01:15:30]  *** Contents of shared directory: ***
[2026-04-12 01:15:30] total 411036
[2026-04-12 01:15:30] -rw-r--r-- 2 boinc boinc 226478421 Apr 11 23:33 ATLAS.root_0
[2026-04-12 01:15:30] -rw-r--r-- 2 boinc boinc    664489 Apr 11 23:33 input.tar.gz
[2026-04-12 01:15:30] -rw-r--r-- 2 boinc boinc     15665 Apr 11 23:33 start_atlas.sh
[2026-04-12 01:15:30] -rw------- 1 boinc boinc 192865507 Apr 12 01:14 HITS.pool.root.1
[2026-04-12 01:15:30] -rw------- 1 boinc boinc    860160 Apr 12 01:15 result.tar.gz
01:15:31 (1594323): run_atlas exited; CPU time 17285.187969
01:15:31 (1594323): called boinc_finish(0)

</stderr_txt>
]]>

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