Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:45:42 (393153): wrapper (7.7.26015): starting
03:45:42 (393153): wrapper: running run_atlas (--nthreads 9)
[2026-04-11 03:45:42] Arguments: --nthreads 9
[2026-04-11 03:45:42] Threads: 9
[2026-04-11 03:45:42] Checking for CVMFS
[2026-04-11 03:45:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 03:45:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 03:45:42] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 03:45:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 03:45:43] 2.13.3.0 11314 225608 304832 158336 0 439 28613914 32935936 27215 16776704 0 1464484768 99.599 1531018605 34218 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-04-11 03:45:43] CVMFS is ok
[2026-04-11 03:45:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 03:45:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 03:45:43] Further information can be found at the LHC@home message board.
[2026-04-11 03:45:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 03:45:43] Checking for apptainer binary...
[2026-04-11 03:45:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 03:45:43] Running /usr/bin/apptainer --version
[2026-04-11 03:45:43] apptainer version 1.4.5-2.el9
[2026-04-11 03:45:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 03:45:43] c7-2-10.aglt2.org
[2026-04-11 03:45:43] apptainer works
[2026-04-11 03:45:43] Set ATHENA_PROC_NUMBER=9
[2026-04-11 03:45:43] Set ATHENA_CORE_NUMBER=9
[2026-04-11 03:45:43] Starting ATLAS job with PandaID=7086870568
[2026-04-11 03:45:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 06:03:35]  *** The last 200 lines of the pilot log: ***
[2026-04-11 06:03:35] 2026-04-11 10:02:46,143 | INFO     | extracted standard info from prmon json
[2026-04-11 06:03:35] 2026-04-11 10:02:46,144 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 06:03:35] 2026-04-11 10:02:46,144 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 06:03:35] 2026-04-11 10:02:46,144 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 06:03:35] 2026-04-11 10:02:46,148 | INFO     | fitting pss+swap vs Time
[2026-04-11 06:03:35] 2026-04-11 10:02:46,148 | INFO     | sum of square deviations: 746061325.4701473
[2026-04-11 06:03:35] 2026-04-11 10:02:46,149 | INFO     | sum of deviations: 13328949547.440298
[2026-04-11 06:03:35] 2026-04-11 10:02:46,149 | INFO     | mean x (centered): 0.0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,149 | INFO     | mean y: 2527865.529850746
[2026-04-11 06:03:35] 2026-04-11 10:02:46,149 | INFO     | intersect: 2527865.529850746
[2026-04-11 06:03:35] 2026-04-11 10:02:46,149 | INFO     | chi2: 1.5039538043599934
[2026-04-11 06:03:35] 2026-04-11 10:02:46,149 | INFO     | sum of square deviations: 665614920.9922469
[2026-04-11 06:03:35] 2026-04-11 10:02:46,150 | INFO     | sum of deviations: 12746639270.937984
[2026-04-11 06:03:35] 2026-04-11 10:02:46,150 | INFO     | mean x (centered): 0.0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,150 | INFO     | mean y: 2526761.0620155036
[2026-04-11 06:03:35] 2026-04-11 10:02:46,150 | INFO     | intersect: 2526761.0620155036
[2026-04-11 06:03:35] 2026-04-11 10:02:46,150 | INFO     | chi2: 1.506197635770175
[2026-04-11 06:03:35] 2026-04-11 10:02:46,150 | INFO     | current chi2=1.506197635770175 (change=-0.149195500797742 %)
[2026-04-11 06:03:35] 2026-04-11 10:02:46,150 | INFO     | right removable region: 128
[2026-04-11 06:03:35] 2026-04-11 10:02:46,150 | INFO     | sum of square deviations: 665621997.9689934
[2026-04-11 06:03:35] 2026-04-11 10:02:46,151 | INFO     | sum of deviations: -6345014060.767444
[2026-04-11 06:03:35] 2026-04-11 10:02:46,151 | INFO     | mean x (centered): 0.0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,151 | INFO     | mean y: 2564467.88372093
[2026-04-11 06:03:35] 2026-04-11 10:02:46,151 | INFO     | intersect: 2564467.88372093
[2026-04-11 06:03:35] 2026-04-11 10:02:46,151 | INFO     | chi2: 0.028827312304066707
[2026-04-11 06:03:35] 2026-04-11 10:02:46,151 | INFO     | current chi2=0.028827312304066707 (change=98.08323153141434 %)
[2026-04-11 06:03:35] 2026-04-11 10:02:46,152 | INFO     | sum of square deviations: 591182782.9677436
[2026-04-11 06:03:35] 2026-04-11 10:02:46,152 | INFO     | sum of deviations: -4277732267.870968
[2026-04-11 06:03:35] 2026-04-11 10:02:46,153 | INFO     | mean x (centered): 0.0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,153 | INFO     | mean y: 2560214.435483871
[2026-04-11 06:03:35] 2026-04-11 10:02:46,153 | INFO     | intersect: 2560214.435483871
[2026-04-11 06:03:35] 2026-04-11 10:02:46,153 | INFO     | chi2: 0.024457034616368903
[2026-04-11 06:03:35] 2026-04-11 10:02:46,153 | INFO     | current chi2=0.024457034616368903 (change=15.160198223131898 %)
[2026-04-11 06:03:35] 2026-04-11 10:02:46,153 | INFO     | left removable region: 10
[2026-04-11 06:03:35] 2026-04-11 10:02:46,154 | INFO     | sum of square deviations: 509442141.49152595
[2026-04-11 06:03:35] 2026-04-11 10:02:46,154 | INFO     | sum of deviations: -4190435265.98305
[2026-04-11 06:03:35] 2026-04-11 10:02:46,154 | INFO     | mean x (centered): 0.0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,154 | INFO     | mean y: 2560409.9830508474
[2026-04-11 06:03:35] 2026-04-11 10:02:46,154 | INFO     | intersect: 2560409.9830508474
[2026-04-11 06:03:35] 2026-04-11 10:02:46,154 | INFO     | chi2: 0.02389753799334753
[2026-04-11 06:03:35] 2026-04-11 10:02:46,154 | INFO     | current memory leak: -8.23 B/s (using 118 data points, chi2=0.02)
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | could have reported an average CPU frequency of 3272 MHz (8 samples)
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | ..............................
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | . Timing measurements:
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | . get job = 0 s
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | . initial setup = 12 s
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | . payload setup = 25 s
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | . stage-in = 0 s
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | . payload execution = 8148 s
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | . stage-out = 1 s
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | . log creation = 0 s
[2026-04-11 06:03:35] 2026-04-11 10:02:46,155 | INFO     | ..............................
[2026-04-11 06:03:35] 2026-04-11 10:02:46,572 | INFO     | 
[2026-04-11 06:03:35] 2026-04-11 10:02:46,573 | INFO     | job summary report
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | --------------------------------------------------
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | PanDA job id: 7086870568
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | task id: 49263208
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | errors: (none)
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | pilot state: finished 
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | transexitcode: 0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | exeerrorcode: 0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | exeerrordiag: 
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | exitcode: 0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | exitmsg: OK
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | cpuconsumptiontime: 32242 s
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | nevents: 400
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | neventsw: 0
[2026-04-11 06:03:35] 2026-04-11 10:02:46,574 | INFO     | pid: 403925
[2026-04-11 06:03:35] 2026-04-11 10:02:46,575 | INFO     | pgrp: 403925
[2026-04-11 06:03:35] 2026-04-11 10:02:46,575 | INFO     | corecount: 9
[2026-04-11 06:03:35] 2026-04-11 10:02:46,575 | INFO     | event service: False
[2026-04-11 06:03:35] 2026-04-11 10:02:46,575 | INFO     | sizes: {0: 2281468, 11: 2281468, 8177: 2309476, 8179: 2318668}
[2026-04-11 06:03:35] 2026-04-11 10:02:46,575 | INFO     | --------------------------------------------------
[2026-04-11 06:03:35] 2026-04-11 10:02:46,575 | INFO     | 
[2026-04-11 06:03:35] 2026-04-11 10:02:46,575 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-04-11 06:03:35] 2026-04-11 10:02:46,661 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,661 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,661 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,661 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,662 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,664 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,664 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,664 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,664 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 06:03:35] 2026-04-11 10:02:46,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,665 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 06:03:35] 2026-04-11 10:02:46,665 | INFO     | job 7086870568 has completed (purged errors)
[2026-04-11 06:03:35] 2026-04-11 10:02:46,665 | INFO     | overall cleanup function is called
[2026-04-11 06:03:35] 2026-04-11 10:02:47,674 | INFO     | --- collectZombieJob: --- 10, [403925]
[2026-04-11 06:03:35] 2026-04-11 10:02:47,674 | INFO     | zombie collector waiting for pid 403925
[2026-04-11 06:03:35] 2026-04-11 10:02:47,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 06:03:35] 2026-04-11 10:02:47,675 | INFO     | collected zombie processes
[2026-04-11 06:03:35] 2026-04-11 10:02:47,675 | INFO     | will attempt to kill all subprocesses of pid=403925
[2026-04-11 06:03:35] 2026-04-11 10:02:48,800 | INFO     | process IDs to be killed: [403925] (in reverse order)
[2026-04-11 06:03:35] 2026-04-11 10:02:48,886 | WARNING  | process 403925 can no longer be monitored (due to stat problems) - aborting
[2026-04-11 06:03:35] 2026-04-11 10:02:49,049 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 06:03:35] 2026-04-11 10:02:49,050 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 06:03:35] 2026-04-11 10:02:49,085 | INFO     | did not find any defunct processes belonging to 403925
[2026-04-11 06:03:35] 2026-04-11 10:02:49,136 | INFO     | did not find any defunct processes belonging to 403925
[2026-04-11 06:03:35] 2026-04-11 10:02:49,136 | INFO     | Ready for new job
[2026-04-11 06:03:35] 2026-04-11 10:02:49,149 | INFO     | **************************************
[2026-04-11 06:03:35] 2026-04-11 10:02:49,149 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 06:03:35] 2026-04-11 10:02:49,151 | INFO     | **************************************
[2026-04-11 06:03:35] 2026-04-11 10:02:49,151 | INFO     | 
[2026-04-11 06:03:35] 2026-04-11 10:02:49,157 | INFO     | architecture information:
[2026-04-11 06:03:35] 2026-04-11 10:02:49,159 | INFO     | executing command: cat /etc/os-release
[2026-04-11 06:03:35] 2026-04-11 10:02:49,189 | INFO     | cat /etc/os-release:
[2026-04-11 06:03:35] NAME="CentOS Linux"
[2026-04-11 06:03:35] VERSION="7 (Core)"
[2026-04-11 06:03:35] ID="centos"
[2026-04-11 06:03:35] ID_LIKE="rhel fedora"
[2026-04-11 06:03:35] VERSION_ID="7"
[2026-04-11 06:03:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 06:03:35] ANSI_COLOR="0;31"
[2026-04-11 06:03:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 06:03:35] HOME_URL="https://www.centos.org/"
[2026-04-11 06:03:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 06:03:35] 
[2026-04-11 06:03:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 06:03:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 06:03:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 06:03:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 06:03:35] 
[2026-04-11 06:03:35] 2026-04-11 10:02:49,196 | INFO     | **************************************
[2026-04-11 06:03:35] 2026-04-11 10:02:49,402 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 06:03:35] 2026-04-11 10:02:49,403 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 06:03:35] 2026-04-11 10:02:49,403 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-11 06:03:35] 2026-04-11 10:02:49,404 | WARNING  | maxPSS not found in memory monitor output
[2026-04-11 06:03:35] 2026-04-11 10:02:49,404 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/1/PanDA_Pilot-7086870568/payload.stdout) since it has not been created yet
[2026-04-11 06:03:35] 2026-04-11 10:02:49,404 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-04-11 06:03:35] 2026-04-11 10:02:49,419 | INFO     | sufficient remaining disk space (74232889344 B)
[2026-04-11 06:03:35] 2026-04-11 10:02:49,420 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-04-11 06:03:35] 2026-04-11 10:02:49,420 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-7086870568/HITS.49263208._034468.pool.root.1 since it does not exist
[2026-04-11 06:03:35] 2026-04-11 10:02:49,699 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-04-11 06:03:35] 2026-04-11 10:02:49,766 | INFO     | sufficient remaining disk space (74232889344 B)
[2026-04-11 06:03:35] 2026-04-11 10:02:49,767 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 06:03:35] 2026-04-11 10:02:49,767 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 06:03:35] 2026-04-11 10:02:49,767 | INFO     | update_server=False
[2026-04-11 06:03:35] 2026-04-11 10:02:49,767 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 06:03:35] 2026-04-11 10:02:49,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 06:03:35] 2026-04-11 10:02:50,051 | INFO     | number of running child processes to parent process 403925: 1
[2026-04-11 06:03:35] 2026-04-11 10:02:50,051 | INFO     | maximum number of monitored processes: 6
[2026-04-11 06:03:35] 2026-04-11 10:02:50,051 | INFO     | aborting job monitoring since job object (job id=7086870568) has expired
[2026-04-11 06:03:35] 2026-04-11 10:02:50,052 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 06:03:35] 2026-04-11 10:02:50,052 | INFO     | will abort loop
[2026-04-11 06:03:35] 2026-04-11 10:02:50,094 | INFO     | all payload control threads have been joined
[2026-04-11 06:03:35] 2026-04-11 10:02:50,257 | INFO     | all data control threads have been joined
[2026-04-11 06:03:35] 2026-04-11 10:02:50,631 | INFO     | all job control threads have been joined
[2026-04-11 06:03:35] 2026-04-11 10:02:50,773 | INFO     | [job] retrieve thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:50,913 | INFO     | [data] copytool_in thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,014 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,061 | INFO     | [job] job monitor thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,077 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,099 | INFO     | [payload] control thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,122 | INFO     | [job] validate thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,268 | INFO     | [data] control thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,388 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 06:03:35] 2026-04-11 10:02:51,629 | INFO     | [payload] validate_post thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,639 | INFO     | [job] control thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:51,773 | INFO     | [data] copytool_out thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:52,059 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:52,094 | INFO     | [payload] failed_post thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:52,118 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:52,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 06:03:35] 2026-04-11 10:02:52,394 | INFO     | [job] queue monitor thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:02:56,160 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 06:03:35] 2026-04-11 10:03:17,190 | INFO     | 8203s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-04-11 06:03:35] 2026-04-11 10:03:19,125 | INFO     | PID=397699 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-04-11 06:03:35] 2026-04-11 10:03:19,125 | INFO     | .. there are 29 such processes running
[2026-04-11 06:03:35] 2026-04-11 10:03:19,125 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 06:03:35] 2026-04-11 10:03:19,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 06:03:35] 2026-04-11 10:03:19,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 06:03:35] 2026-04-11 10:03:29,264 | INFO     | [monitor] cgroup control has ended
[2026-04-11 06:03:35] 2026-04-11 10:03:29,390 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139883151124288)>', '<ExcThread(monitor, started 139882378815232)>']
[2026-04-11 06:03:35] 2026-04-11 10:03:30,209 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 06:03:35] 2026-04-11 10:03:30,209 | INFO     | [monitor] control thread has ended
[2026-04-11 06:03:35] 2026-04-11 10:03:34,416 | INFO     | all workflow threads have been joined
[2026-04-11 06:03:35] 2026-04-11 10:03:34,416 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 06:03:35] 2026-04-11 10:03:34,417 | INFO     | traces error code: 0
[2026-04-11 06:03:35] 2026-04-11 10:03:34,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 06:03:35] 2026-04-11 10:03:34,599 [wrapper] ==== pilot stdout END ====
[2026-04-11 06:03:35] 2026-04-11 10:03:34,647 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 06:03:35] 2026-04-11 10:03:34,663 [wrapper] pilotpid: 397699
[2026-04-11 06:03:35] 2026-04-11 10:03:34,680 [wrapper] Pilot exit status: 0
[2026-04-11 06:03:35] 2026-04-11 10:03:34,733 [wrapper] pandaids: 7086870568
[2026-04-11 06:03:35] 2026-04-11 10:03:35,091 [wrapper] cleanup supervisor_pilot  979619 397700
[2026-04-11 06:03:35] 2026-04-11 10:03:35,099 [wrapper] Test setup, not cleaning
[2026-04-11 06:03:35] 2026-04-11 10:03:35,101 [wrapper] apfmon messages muted
[2026-04-11 06:03:35] 2026-04-11 10:03:35,106 [wrapper] ==== wrapper stdout END ====
[2026-04-11 06:03:35] 2026-04-11 10:03:35,110 [wrapper] ==== wrapper stderr END ====
[2026-04-11 06:03:35]  *** Error codes and diagnostics ***
[2026-04-11 06:03:35]     "exeErrorCode": 0,
[2026-04-11 06:03:35]     "pilotErrorCode": 0,
[2026-04-11 06:03:35]  *** Listing of results directory ***
[2026-04-11 06:03:35] total 411352
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas    644190 Apr 10 23:16 pilot3.tar.gz
[2026-04-11 06:03:35] -rwx------. 1 boincer umatlas     36322 Apr 11 00:11 runpilot2-wrapper.sh
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas      5094 Apr 11 00:14 queuedata.json
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas       100 Apr 11 03:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 06:03:35] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 11 03:45 run_atlas
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas       105 Apr 11 03:45 job.xml
[2026-04-11 06:03:35] -rw-r--r--. 2 boincer umatlas 223344984 Apr 11 03:45 EVNT.49263206._000834.pool.root.1
[2026-04-11 06:03:35] -rw-r--r--. 2 boincer umatlas     15665 Apr 11 03:45 start_atlas.sh
[2026-04-11 06:03:35] drwxrwx--x. 2 boincer umatlas      4096 Apr 11 03:45 shared
[2026-04-11 06:03:35] -rw-r--r--. 2 boincer umatlas    656933 Apr 11 03:45 input.tar.gz
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas         0 Apr 11 03:45 boinc_lockfile
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas      2575 Apr 11 03:45 pandaJob.out
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas        57 Apr 11 03:45 setup.sh.local
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas    997844 Apr 11 03:46 agis_schedconf.cvmfs.json
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas   1511579 Apr 11 03:46 agis_ddmendpoints.agis.ALL.json
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas       428 Apr 11 03:46 workernode_map.json
[2026-04-11 06:03:35] drwx------. 5 boincer umatlas      4096 Apr 11 03:46 pilot3
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas      6860 Apr 11 05:54 init_data.xml
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas 191616704 Apr 11 06:02 HITS.49263208._034468.pool.root.1
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas       487 Apr 11 06:02 boinc_task_state.xml
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas        95 Apr 11 06:02 pilot_heartbeat.json
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas      1041 Apr 11 06:02 memory_monitor_summary.json
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas    358131 Apr 11 06:02 log.49263208._034468.job.log.tgz.1
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas      6364 Apr 11 06:02 heartbeat_new.json
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas      6255 Apr 11 06:02 heartbeat.json
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas      8192 Apr 11 06:03 boinc_mmap_file
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas        27 Apr 11 06:03 wrapper_checkpoint.txt
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas      6303 Apr 11 06:03 pilotlog.txt
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas    739454 Apr 11 06:03 log.49263208._034468.job.log.1
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas       357 Apr 11 06:03 output.list
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas       410 Apr 11 06:03 runtime_log
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas   1116160 Apr 11 06:03 result.tar.gz
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas      8958 Apr 11 06:03 runtime_log.err
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas       654 Apr 11 06:03 ca083b1df323.diag
[2026-04-11 06:03:35] -rw-r--r--. 1 boincer umatlas     21386 Apr 11 06:03 stderr.txt
[2026-04-11 06:03:35] HITS file was successfully produced:
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas 191616704 Apr 11 06:02 shared/HITS.pool.root.1
[2026-04-11 06:03:35]  *** Contents of shared directory: ***
[2026-04-11 06:03:35] total 407000
[2026-04-11 06:03:35] -rw-r--r--. 2 boincer umatlas 223344984 Apr 11 03:45 ATLAS.root_0
[2026-04-11 06:03:35] -rw-r--r--. 2 boincer umatlas     15665 Apr 11 03:45 start_atlas.sh
[2026-04-11 06:03:35] -rw-r--r--. 2 boincer umatlas    656933 Apr 11 03:45 input.tar.gz
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas 191616704 Apr 11 06:02 HITS.pool.root.1
[2026-04-11 06:03:35] -rw-------. 1 boincer umatlas   1116160 Apr 11 06:03 result.tar.gz
06:03:37 (393153): run_atlas exited; CPU time 32551.792009
06:03:37 (393153): called boinc_finish(0)

</stderr_txt>
]]>

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