Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:30:59 (3994108): wrapper (7.7.26015): starting
19:30:59 (3994108): wrapper: running run_atlas (--nthreads 2)
[2026-04-11 19:30:59] Arguments: --nthreads 2
[2026-04-11 19:30:59] Threads: 2
[2026-04-11 19:30:59] Checking for CVMFS
[2026-04-11 19:30:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 19:30:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 19:30:59] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 19:30:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 19:30:59] 2.9.2.0 3735197 2500 56308 158351 1 49 19983077 36864000 0 130560 0 1058497 99.982 97601 17742 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 19:30:59] CVMFS is ok
[2026-04-11 19:30:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 19:30:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 19:30:59] Further information can be found at the LHC@home message board.
[2026-04-11 19:30:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 19:30:59] Checking for apptainer binary...
[2026-04-11 19:30:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 19:30:59] Running /usr/bin/apptainer --version
[2026-04-11 19:30:59] apptainer version 1.4.1-1.1
[2026-04-11 19:30:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 19:30:59] magicA244
[2026-04-11 19:30:59] apptainer works
[2026-04-11 19:30:59] Set ATHENA_PROC_NUMBER=2
[2026-04-11 19:30:59] Set ATHENA_CORE_NUMBER=2
[2026-04-11 19:30:59] Starting ATLAS job with PandaID=7086955204
[2026-04-11 19:30:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 21:39:27]  *** The last 200 lines of the pilot log: ***
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,033 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,034 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 21:39:27] 2026-04-11 19:38:55,034 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,034 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 21:39:27] 2026-04-11 19:38:55,034 | INFO     | job 7086955204 has completed (purged errors)
[2026-04-11 21:39:27] 2026-04-11 19:38:55,034 | INFO     | overall cleanup function is called
[2026-04-11 21:39:27] 2026-04-11 19:38:55,035 | WARNING  | process 4002544 can no longer be monitored (due to stat problems) - aborting
[2026-04-11 21:39:27] 2026-04-11 19:38:55,058 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 21:39:27] 2026-04-11 19:38:55,086 | INFO     | number of running child processes to parent process 4002544: 1
[2026-04-11 21:39:27] 2026-04-11 19:38:55,086 | INFO     | maximum number of monitored processes: 6
[2026-04-11 21:39:27] 2026-04-11 19:38:55,086 | INFO     | aborting job monitoring since job object (job id=7086955204) has expired
[2026-04-11 21:39:27] 2026-04-11 19:38:56,040 | INFO     | --- collectZombieJob: --- 10, [4002544]
[2026-04-11 21:39:27] 2026-04-11 19:38:56,040 | INFO     | zombie collector waiting for pid 4002544
[2026-04-11 21:39:27] 2026-04-11 19:38:56,040 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 21:39:27] 2026-04-11 19:38:56,040 | INFO     | collected zombie processes
[2026-04-11 21:39:27] 2026-04-11 19:38:56,040 | INFO     | will attempt to kill all subprocesses of pid=4002544
[2026-04-11 21:39:27] 2026-04-11 19:38:56,068 | INFO     | process IDs to be killed: [4002544] (in reverse order)
[2026-04-11 21:39:27] 2026-04-11 19:38:56,090 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 21:39:27] 2026-04-11 19:38:56,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 21:39:27] 2026-04-11 19:38:56,091 | INFO     | did not find any defunct processes belonging to 4002544
[2026-04-11 21:39:27] 2026-04-11 19:38:56,091 | INFO     | did not find any defunct processes belonging to 4002544
[2026-04-11 21:39:27] 2026-04-11 19:38:56,092 | INFO     | Ready for new job
[2026-04-11 21:39:27] 2026-04-11 19:38:56,092 | INFO     | **************************************
[2026-04-11 21:39:27] 2026-04-11 19:38:56,092 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 21:39:27] 2026-04-11 19:38:56,092 | INFO     | **************************************
[2026-04-11 21:39:27] 2026-04-11 19:38:56,092 | INFO     | 
[2026-04-11 21:39:27] 2026-04-11 19:38:56,092 | INFO     | architecture information:
[2026-04-11 21:39:27] 2026-04-11 19:38:56,093 | INFO     | executing command: cat /etc/os-release
[2026-04-11 21:39:27] 2026-04-11 19:38:56,103 | INFO     | cat /etc/os-release:
[2026-04-11 21:39:27] NAME="CentOS Linux"
[2026-04-11 21:39:27] VERSION="7 (Core)"
[2026-04-11 21:39:27] ID="centos"
[2026-04-11 21:39:27] ID_LIKE="rhel fedora"
[2026-04-11 21:39:27] VERSION_ID="7"
[2026-04-11 21:39:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 21:39:27] ANSI_COLOR="0;31"
[2026-04-11 21:39:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 21:39:27] HOME_URL="https://www.centos.org/"
[2026-04-11 21:39:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 21:39:27] 
[2026-04-11 21:39:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 21:39:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 21:39:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 21:39:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 21:39:27] 
[2026-04-11 21:39:27] 2026-04-11 19:38:56,103 | INFO     | **************************************
[2026-04-11 21:39:27] 2026-04-11 19:38:56,606 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 21:39:27] 2026-04-11 19:38:56,616 | INFO     | sufficient remaining disk space (504216158208 B)
[2026-04-11 21:39:27] 2026-04-11 19:38:56,616 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 21:39:27] 2026-04-11 19:38:56,616 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 21:39:27] 2026-04-11 19:38:56,616 | INFO     | update_server=False
[2026-04-11 21:39:27] 2026-04-11 19:38:56,616 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 21:39:27] 2026-04-11 19:38:56,616 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 21:39:27] 2026-04-11 19:38:56,616 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 21:39:27] 2026-04-11 19:38:56,616 | INFO     | aborting loop
[2026-04-11 21:39:27] 2026-04-11 19:38:56,811 | INFO     | all payload control threads have been joined
[2026-04-11 21:39:27] 2026-04-11 19:38:57,008 | INFO     | all job control threads have been joined
[2026-04-11 21:39:27] 2026-04-11 19:38:57,358 | INFO     | all data control threads have been joined
[2026-04-11 21:39:27] 2026-04-11 19:38:57,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 21:39:27] 2026-04-11 19:38:57,621 | INFO     | [job] retrieve thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:57,621 | INFO     | [job] queue monitor thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:57,622 | INFO     | [job] job monitor thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:57,816 | INFO     | [payload] control thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:57,863 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,014 | INFO     | [job] control thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,151 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,292 | INFO     | [payload] validate_post thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 21:39:27] 2026-04-11 19:38:58,363 | INFO     | [data] control thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,522 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,522 | INFO     | [job] validate thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,595 | INFO     | [payload] failed_post thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,625 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:58,741 | INFO     | [data] copytool_in thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:38:59,562 | INFO     | [data] copytool_out thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:39:02,298 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 21:39:27] 2026-04-11 19:39:22,083 | INFO     | [monitor] cgroup control has ended
[2026-04-11 21:39:27] 2026-04-11 19:39:22,179 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139690165602112)>', '<ExcThread(monitor, started 139689449223936)>']
[2026-04-11 21:39:27] 2026-04-11 19:39:27,114 | INFO     | PID=3998135 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 21:39:27] 2026-04-11 19:39:27,115 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 21:39:27] 2026-04-11 19:39:27,115 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 21:39:27] 2026-04-11 19:39:27,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 21:39:27] 2026-04-11 19:39:27,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 21:39:27] 2026-04-11 19:39:27,115 | INFO     | [monitor] control thread has ended
[2026-04-11 21:39:27] 2026-04-11 19:39:27,204 | INFO     | all workflow threads have been joined
[2026-04-11 21:39:27] 2026-04-11 19:39:27,204 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 21:39:27] 2026-04-11 19:39:27,204 | INFO     | traces error code: 0
[2026-04-11 21:39:27] 2026-04-11 19:39:27,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 21:39:27] 2026-04-11 19:39:27,248 [wrapper] ==== pilot stdout END ====
[2026-04-11 21:39:27] 2026-04-11 19:39:27,251 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 21:39:27] 2026-04-11 19:39:27,253 [wrapper] pilotpid: 3998135
[2026-04-11 21:39:27] 2026-04-11 19:39:27,256 [wrapper] Pilot exit status: 0
[2026-04-11 21:39:27] 2026-04-11 19:39:27,262 [wrapper] pandaids: 7086955204
[2026-04-11 21:39:27] 2026-04-11 19:39:27,275 [wrapper] cleanup supervisor_pilot 4008204 3998136
[2026-04-11 21:39:27] 2026-04-11 19:39:27,278 [wrapper] Test setup, not cleaning
[2026-04-11 21:39:27] 2026-04-11 19:39:27,280 [wrapper] apfmon messages muted
[2026-04-11 21:39:27] 2026-04-11 19:39:27,283 [wrapper] ==== wrapper stdout END ====
[2026-04-11 21:39:27] 2026-04-11 19:39:27,286 [wrapper] ==== wrapper stderr END ====
[2026-04-11 21:39:27]  *** Error codes and diagnostics ***
[2026-04-11 21:39:27]     "exeErrorCode": 0,
[2026-04-11 21:39:27]     "pilotErrorCode": 0,
[2026-04-11 21:39:27]  *** Listing of results directory ***
[2026-04-11 21:39:27] total 411328
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc    644190 Apr 11 07:38 pilot3.tar.gz
[2026-04-11 21:39:27] -rwx------ 1 boinc boinc     36322 Apr 11 07:39 runpilot2-wrapper.sh
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc      5094 Apr 11 07:40 queuedata.json
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc       100 Apr 11 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 21:39:27] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 19:30 run_atlas
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc       105 Apr 11 19:30 job.xml
[2026-04-11 21:39:27] -rw-r--r-- 2 boinc boinc 226765809 Apr 11 19:30 EVNT.49263189._000965.pool.root.1
[2026-04-11 21:39:27] -rw-r--r-- 2 boinc boinc    656929 Apr 11 19:30 input.tar.gz
[2026-04-11 21:39:27] -rw-r--r-- 2 boinc boinc     15665 Apr 11 19:30 start_atlas.sh
[2026-04-11 21:39:27] drwxrwx--x 2 boinc boinc      4096 Apr 11 19:30 shared
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc         0 Apr 11 19:30 boinc_setup_complete
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc      6124 Apr 11 19:30 init_data.xml
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc         0 Apr 11 19:30 boinc_lockfile
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc      2574 Apr 11 19:30 pandaJob.out
[2026-04-11 21:39:27] -rw------- 1 boinc boinc    997828 Apr 11 19:31 agis_schedconf.cvmfs.json
[2026-04-11 21:39:27] -rw------- 1 boinc boinc   1511579 Apr 11 19:31 agis_ddmendpoints.agis.ALL.json
[2026-04-11 21:39:27] -rw------- 1 boinc boinc       422 Apr 11 19:31 workernode_map.json
[2026-04-11 21:39:27] drwx------ 5 boinc boinc      4096 Apr 11 19:31 pilot3
[2026-04-11 21:39:27] -rw------- 1 boinc boinc 188480985 Apr 11 21:38 HITS.49263191._044548.pool.root.1
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc       487 Apr 11 21:38 boinc_task_state.xml
[2026-04-11 21:39:27] -rw------- 1 boinc boinc        95 Apr 11 21:38 pilot_heartbeat.json
[2026-04-11 21:39:27] -rw------- 1 boinc boinc      1012 Apr 11 21:38 memory_monitor_summary.json
[2026-04-11 21:39:27] -rw------- 1 boinc boinc    224470 Apr 11 21:38 log.49263191._044548.job.log.tgz.1
[2026-04-11 21:39:27] -rw------- 1 boinc boinc      6318 Apr 11 21:38 heartbeat_new.json
[2026-04-11 21:39:27] -rw------- 1 boinc boinc      6209 Apr 11 21:38 heartbeat.json
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc      8192 Apr 11 21:39 boinc_mmap_file
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc        27 Apr 11 21:39 wrapper_checkpoint.txt
[2026-04-11 21:39:27] -rw------- 1 boinc boinc      4747 Apr 11 21:39 pilotlog.txt
[2026-04-11 21:39:27] -rw------- 1 boinc boinc    727734 Apr 11 21:39 log.49263191._044548.job.log.1
[2026-04-11 21:39:27] -rw------- 1 boinc boinc       357 Apr 11 21:39 output.list
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc       410 Apr 11 21:39 runtime_log
[2026-04-11 21:39:27] -rw------- 1 boinc boinc    972800 Apr 11 21:39 result.tar.gz
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc      8533 Apr 11 21:39 runtime_log.err
[2026-04-11 21:39:27] -rw------- 1 boinc boinc       662 Apr 11 21:39 de8bca90de43.diag
[2026-04-11 21:39:27] -rw-r--r-- 1 boinc boinc     12555 Apr 11 21:39 stderr.txt
[2026-04-11 21:39:27] HITS file was successfully produced:
[2026-04-11 21:39:27] -rw------- 1 boinc boinc 188480985 Apr 11 21:38 shared/HITS.pool.root.1
[2026-04-11 21:39:27]  *** Contents of shared directory: ***
[2026-04-11 21:39:27] total 407132
[2026-04-11 21:39:27] -rw-r--r-- 2 boinc boinc 226765809 Apr 11 19:30 ATLAS.root_0
[2026-04-11 21:39:27] -rw-r--r-- 2 boinc boinc    656929 Apr 11 19:30 input.tar.gz
[2026-04-11 21:39:27] -rw-r--r-- 2 boinc boinc     15665 Apr 11 19:30 start_atlas.sh
[2026-04-11 21:39:27] -rw------- 1 boinc boinc 188480985 Apr 11 21:38 HITS.pool.root.1
[2026-04-11 21:39:27] -rw------- 1 boinc boinc    972800 Apr 11 21:39 result.tar.gz
21:39:28 (3994108): run_atlas exited; CPU time 14747.009664
21:39:28 (3994108): called boinc_finish(0)

</stderr_txt>
]]>

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