Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:20:10 (2962229): wrapper (7.7.26015): starting
03:20:10 (2962229): wrapper: running run_atlas (--nthreads 12)
[2026-04-12 03:20:10] Arguments: --nthreads 12
[2026-04-12 03:20:10] Threads: 12
[2026-04-12 03:20:10] Checking for CVMFS
[2026-04-12 03:20:10] No cvmfs_config command found, will try listing directly
[2026-04-12 03:20:10] CVMFS is ok
[2026-04-12 03:20:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-12 03:20:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-12 03:20:10] Further information can be found at the LHC@home message board.
[2026-04-12 03:20:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 03:20:10] Checking for apptainer binary...
[2026-04-12 03:20:10] which: no apptainer in ((null))
[2026-04-12 03:20:10] apptainer is not installed, using version from CVMFS
[2026-04-12 03:20:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 03:20:10] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-04-12 03:20:10] apptainer works
[2026-04-12 03:20:10] Set ATHENA_PROC_NUMBER=12
[2026-04-12 03:20:10] Set ATHENA_CORE_NUMBER=12
[2026-04-12 03:20:10] Starting ATLAS job with PandaID=7085528990
[2026-04-12 03:20:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 03:49:45]  *** The last 200 lines of the pilot log: ***
[2026-04-12 03:49:45]  scope=mc23_13p6TeV
[2026-04-12 03:49:45]  status=None
[2026-04-12 03:49:45]  status_code=0
[2026-04-12 03:49:45]  storage_token=
[2026-04-12 03:49:45]  surl=/var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/log.49263200._036972.job.log.tgz.1
[2026-04-12 03:49:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/23/log.49263200._036972.job.log.tgz.1
[2026-04-12 03:49:45]  workdir=None
[2026-04-12 03:49:45] ]
[2026-04-12 03:49:45] 2026-04-12 01:49:09,156 | INFO     | transferring file log.49263200._036972.job.log.tgz.1 from /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/log.49263200._036972.job.log.tgz.1 to /var/lib/b
[2026-04-12 03:49:45] 2026-04-12 01:49:09,156 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/log.49263200._036972.job.log.tgz.1 /var/lib/boinc/var/slot96/slots/2/lo
[2026-04-12 03:49:45] 2026-04-12 01:49:09,173 | INFO     | adding to output.list: log.49263200._036972.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/86/23/log.49263200._036972.job.log.tg
[2026-04-12 03:49:45] 2026-04-12 01:49:09,173 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-12 03:49:45] 2026-04-12 01:49:09,174 | INFO     | summary of transferred files:
[2026-04-12 03:49:45] 2026-04-12 01:49:09,174 | INFO     |  -- lfn=log.49263200._036972.job.log.tgz.1, status_code=0, status=transferred
[2026-04-12 03:49:45] 2026-04-12 01:49:09,174 | INFO     | stage-out finished correctly
[2026-04-12 03:49:45] 2026-04-12 01:49:12,041 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-12 03:49:45] 2026-04-12 01:49:12,544 | WARNING  | process 2985667 can no longer be monitored (due to stat problems) - aborting
[2026-04-12 03:49:45] 2026-04-12 01:49:12,544 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 03:49:45] 2026-04-12 01:49:12,545 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 03:49:45] 2026-04-12 01:49:12,545 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-04-12 03:49:45] 2026-04-12 01:49:12,545 | WARNING  | maxPSS not found in memory monitor output
[2026-04-12 03:49:45] 2026-04-12 01:49:12,545 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4399598 B
[2026-04-12 03:49:45] 2026-04-12 01:49:12,545 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15855 B
[2026-04-12 03:49:45] 2026-04-12 01:49:12,545 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/2
[2026-04-12 03:49:45] 2026-04-12 01:49:12,561 | INFO     | sufficient remaining disk space (186322518016 B)
[2026-04-12 03:49:45] 2026-04-12 01:49:12,562 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-04-12 03:49:45] 2026-04-12 01:49:12,562 | INFO     | size of work directory /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990: 4679376 B (within 5033164800 B limit)
[2026-04-12 03:49:45] 2026-04-12 01:49:12,562 | INFO     | pfn file=/var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/HITS.49263200._036972.pool.root.1 does not exist (skip from workdir size calculation)
[2026-04-12 03:49:45] 2026-04-12 01:49:12,562 | INFO     | total size of present files: 0 B (workdir size: 4679376 B)
[2026-04-12 03:49:45] 2026-04-12 01:49:12,562 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/HITS.49263200._036972.pool.root.1 since it does not exist
[2026-04-12 03:49:45] 2026-04-12 01:49:12,886 | INFO     | number of running child processes to parent process 2985667: 1
[2026-04-12 03:49:45] 2026-04-12 01:49:12,886 | INFO     | maximum number of monitored processes: 6
[2026-04-12 03:49:45] 2026-04-12 01:49:13,362 | INFO     | job 7085528990 has state=finished
[2026-04-12 03:49:45] 2026-04-12 01:49:13,362 | INFO     | preparing for final server update for job 7085528990 in state='finished'
[2026-04-12 03:49:45] 2026-04-12 01:49:13,362 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/jobReport.json
[2026-04-12 03:49:45] 2026-04-12 01:49:13,364 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/2/workernode_map.json
[2026-04-12 03:49:45] 2026-04-12 01:49:13,364 | INFO     | this job has now completed (state=finished)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,364 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,364 | INFO     | log transfer has been attempted: DONE
[2026-04-12 03:49:45] 2026-04-12 01:49:13,364 | INFO     | job 7085528990 has finished - writing final server update
[2026-04-12 03:49:45] 2026-04-12 01:49:13,364 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1045407/.job.ad'
[2026-04-12 03:49:45] 2026-04-12 01:49:13,364 | INFO     | total number of processed events: 400 (read)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,381 | INFO     | using path: /var/lib/boinc/var/slot96/slots/2/PanDA_Pilot-7085528990/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,381 | INFO     | extracted standard info from prmon json
[2026-04-12 03:49:45] 2026-04-12 01:49:13,381 | INFO     | extracted standard memory fields from prmon json
[2026-04-12 03:49:45] 2026-04-12 01:49:13,381 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-12 03:49:45] 2026-04-12 01:49:13,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-12 03:49:45] 2026-04-12 01:49:13,382 | INFO     | fitting pss+swap vs Time
[2026-04-12 03:49:45] 2026-04-12 01:49:13,382 | INFO     | sum of square deviations: 2865170.0
[2026-04-12 03:49:45] 2026-04-12 01:49:13,382 | INFO     | sum of deviations: 47380834.99999999
[2026-04-12 03:49:45] 2026-04-12 01:49:13,382 | INFO     | mean x (centered): 0.0
[2026-04-12 03:49:45] 2026-04-12 01:49:13,382 | INFO     | mean y: 2712401.238095238
[2026-04-12 03:49:45] 2026-04-12 01:49:13,382 | INFO     | intersect: 2712401.238095238
[2026-04-12 03:49:45] 2026-04-12 01:49:13,382 | INFO     | chi2: 2.5491529695832407e-05
[2026-04-12 03:49:45] 2026-04-12 01:49:13,382 | INFO     | current memory leak: 16.54 B/s (using 21 data points, chi2=0.00)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | could have reported an average CPU frequency of 3654 MHz (4 samples)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | ..............................
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | . Timing measurements:
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | . get job = 0 s
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | . initial setup = 3 s
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | . payload setup = 5 s
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | . stage-in = 0 s
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | . payload execution = 1706 s
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | . stage-out = 0 s
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | . log creation = 0 s
[2026-04-12 03:49:45] 2026-04-12 01:49:13,383 | INFO     | ..............................
[2026-04-12 03:49:45] 2026-04-12 01:49:13,429 | INFO     | 
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | job summary report
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | --------------------------------------------------
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | PanDA job id: 7085528990
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | task id: 49263200
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | errors: (none)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | pilot state: finished 
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | transexitcode: 0
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | exeerrorcode: 0
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | exeerrordiag: 
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | exitcode: 0
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | exitmsg: OK
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | cpuconsumptiontime: 18033 s
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | nevents: 400
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | neventsw: 0
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | pid: 2985667
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | pgrp: 2985667
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | corecount: 12
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | event service: False
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | sizes: {0: 2281479, 10: 2281479, 1716: 2306346, 1718: 2315366, 1721: 2315422, 1722: 2315644}
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | --------------------------------------------------
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | 
[2026-04-12 03:49:45] 2026-04-12 01:49:13,430 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/2
[2026-04-12 03:49:45] 2026-04-12 01:49:13,447 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,447 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,447 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,447 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,447 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,447 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | job 7085528990 has completed (purged errors)
[2026-04-12 03:49:45] 2026-04-12 01:49:13,448 | INFO     | overall cleanup function is called
[2026-04-12 03:49:45] 2026-04-12 01:49:14,455 | INFO     | --- collectZombieJob: --- 10, [2985667]
[2026-04-12 03:49:45] 2026-04-12 01:49:14,455 | INFO     | zombie collector waiting for pid 2985667
[2026-04-12 03:49:45] 2026-04-12 01:49:14,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 03:49:45] 2026-04-12 01:49:14,455 | INFO     | collected zombie processes
[2026-04-12 03:49:45] 2026-04-12 01:49:14,455 | INFO     | will attempt to kill all subprocesses of pid=2985667
[2026-04-12 03:49:45] 2026-04-12 01:49:14,794 | INFO     | process IDs to be killed: [2985667] (in reverse order)
[2026-04-12 03:49:45] 2026-04-12 01:49:14,928 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 03:49:45] 2026-04-12 01:49:14,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 03:49:45] 2026-04-12 01:49:14,950 | INFO     | did not find any defunct processes belonging to 2985667
[2026-04-12 03:49:45] 2026-04-12 01:49:14,971 | INFO     | did not find any defunct processes belonging to 2985667
[2026-04-12 03:49:45] 2026-04-12 01:49:14,971 | INFO     | Ready for new job
[2026-04-12 03:49:45] 2026-04-12 01:49:14,972 | INFO     | **************************************
[2026-04-12 03:49:45] 2026-04-12 01:49:14,972 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 03:49:45] 2026-04-12 01:49:14,972 | INFO     | **************************************
[2026-04-12 03:49:45] 2026-04-12 01:49:14,972 | INFO     | 
[2026-04-12 03:49:45] 2026-04-12 01:49:14,977 | INFO     | architecture information:
[2026-04-12 03:49:45] 2026-04-12 01:49:14,978 | INFO     | executing command: cat /etc/os-release
[2026-04-12 03:49:45] 2026-04-12 01:49:14,991 | INFO     | cat /etc/os-release:
[2026-04-12 03:49:45] NAME="CentOS Linux"
[2026-04-12 03:49:45] VERSION="7 (Core)"
[2026-04-12 03:49:45] ID="centos"
[2026-04-12 03:49:45] ID_LIKE="rhel fedora"
[2026-04-12 03:49:45] VERSION_ID="7"
[2026-04-12 03:49:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 03:49:45] ANSI_COLOR="0;31"
[2026-04-12 03:49:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 03:49:45] HOME_URL="https://www.centos.org/"
[2026-04-12 03:49:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 03:49:45] 
[2026-04-12 03:49:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 03:49:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 03:49:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 03:49:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 03:49:45] 
[2026-04-12 03:49:45] 2026-04-12 01:49:14,992 | INFO     | **************************************
[2026-04-12 03:49:45] 2026-04-12 01:49:15,495 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/2
[2026-04-12 03:49:45] 2026-04-12 01:49:15,510 | INFO     | sufficient remaining disk space (186321469440 B)
[2026-04-12 03:49:45] 2026-04-12 01:49:15,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 03:49:45] 2026-04-12 01:49:15,510 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 03:49:45] 2026-04-12 01:49:15,510 | INFO     | update_server=False
[2026-04-12 03:49:45] 2026-04-12 01:49:15,511 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 03:49:45] 2026-04-12 01:49:15,511 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 03:49:45] 2026-04-12 01:49:15,704 | INFO     | all data control threads have been joined
[2026-04-12 03:49:45] 2026-04-12 01:49:16,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 03:49:45] 2026-04-12 01:49:16,394 | INFO     | aborting loop
[2026-04-12 03:49:45] 2026-04-12 01:49:16,516 | INFO     | [job] retrieve thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:16,709 | INFO     | [data] control thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:16,754 | INFO     | all job control threads have been joined
[2026-04-12 03:49:45] 2026-04-12 01:49:16,882 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:16,892 | INFO     | all payload control threads have been joined
[2026-04-12 03:49:45] 2026-04-12 01:49:17,267 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,399 | INFO     | [job] job monitor thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,436 | INFO     | [job] validate thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,516 | INFO     | [data] copytool_out thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,537 | INFO     | [payload] failed_post thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,600 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,627 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,760 | INFO     | [job] control thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,761 | INFO     | [data] copytool_in thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:17,897 | INFO     | [payload] control thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:18,042 | INFO     | [payload] validate_post thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:18,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 03:49:45] 2026-04-12 01:49:18,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 03:49:45] 2026-04-12 01:49:19,446 | INFO     | [job] queue monitor thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:22,098 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 03:49:45] 2026-04-12 01:49:22,924 | INFO     | [monitor] cgroup control has ended
[2026-04-12 03:49:45] 2026-04-12 01:49:23,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22931152357184)>', '<ExcThread(monitor, started 22930911405824)>']
[2026-04-12 03:49:45] 2026-04-12 01:49:28,433 | INFO     | all workflow threads have been joined
[2026-04-12 03:49:45] 2026-04-12 01:49:28,434 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 03:49:45] 2026-04-12 01:49:28,434 | INFO     | traces error code: 0
[2026-04-12 03:49:45] 2026-04-12 01:49:28,434 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 03:49:45] 2026-04-12 01:49:45,396 | INFO     | PID=2970610 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 03:49:45] 2026-04-12 01:49:45,396 | INFO     | .. there are 14 such processes running
[2026-04-12 03:49:45] 2026-04-12 01:49:45,396 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 03:49:45] 2026-04-12 01:49:45,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 03:49:45] 2026-04-12 01:49:45,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 03:49:45] 2026-04-12 01:49:45,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 03:49:45] 2026-04-12 01:49:45,397 | INFO     | [monitor] control thread has ended
[2026-04-12 03:49:45] 2026-04-12 01:49:45,587 [wrapper] ==== pilot stdout END ====
[2026-04-12 03:49:45] 2026-04-12 01:49:45,589 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 03:49:45] 2026-04-12 01:49:45,591 [wrapper] pilotpid: 2970610
[2026-04-12 03:49:45] 2026-04-12 01:49:45,593 [wrapper] Pilot exit status: 0
[2026-04-12 03:49:45] 2026-04-12 01:49:45,599 [wrapper] pandaids: 7085528990
[2026-04-12 03:49:45] 2026-04-12 01:49:45,700 [wrapper] cleanup supervisor_pilot 3126110 2970611
[2026-04-12 03:49:45] 2026-04-12 01:49:45,703 [wrapper] Test setup, not cleaning
[2026-04-12 03:49:45] 2026-04-12 01:49:45,705 [wrapper] apfmon messages muted
[2026-04-12 03:49:45] 2026-04-12 01:49:45,707 [wrapper] ==== wrapper stdout END ====
[2026-04-12 03:49:45] 2026-04-12 01:49:45,709 [wrapper] ==== wrapper stderr END ====
[2026-04-12 03:49:45]  *** Error codes and diagnostics ***
[2026-04-12 03:49:45]     "exeErrorCode": 0,
[2026-04-12 03:49:45]     "pilotErrorCode": 0,
[2026-04-12 03:49:45]  *** Listing of results directory ***
[2026-04-12 03:49:45] total 416984
[2026-04-12 03:49:45] -rwx------. 1 boinc boinc     36322 Apr 10 17:55 runpilot2-wrapper.sh
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc      5094 Apr 10 18:00 queuedata.json
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc    644190 Apr 10 18:00 pilot3.tar.gz
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc       100 Apr 12 03:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 03:49:45] -rwxr-xr-x. 1 boinc boinc      7986 Apr 12 03:20 run_atlas
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc       105 Apr 12 03:20 job.xml
[2026-04-12 03:49:45] -rw-r--r--. 2 boinc boinc 224587924 Apr 12 03:20 EVNT.49263198._000783.pool.root.1
[2026-04-12 03:49:45] -rw-r--r--. 2 boinc boinc     15665 Apr 12 03:20 start_atlas.sh
[2026-04-12 03:49:45] drwxrwx--x. 2 boinc boinc      4096 Apr 12 03:20 shared
[2026-04-12 03:49:45] -rw-r--r--. 2 boinc boinc    656935 Apr 12 03:20 input.tar.gz
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc      6626 Apr 12 03:20 init_data.xml
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc         0 Apr 12 03:20 boinc_lockfile
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc      2575 Apr 12 03:20 pandaJob.out
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc    997775 Apr 12 03:20 agis_schedconf.cvmfs.json
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc   1511579 Apr 12 03:20 agis_ddmendpoints.agis.ALL.json
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc       442 Apr 12 03:20 workernode_map.json
[2026-04-12 03:49:45] drwx------. 5 boinc boinc      4096 Apr 12 03:20 pilot3
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc 197249467 Apr 12 03:48 HITS.49263200._036972.pool.root.1
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc        95 Apr 12 03:48 pilot_heartbeat.json
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc       486 Apr 12 03:49 boinc_task_state.xml
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc      1029 Apr 12 03:49 memory_monitor_summary.json
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc    341465 Apr 12 03:49 log.49263200._036972.job.log.tgz.1
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc      6378 Apr 12 03:49 heartbeat_new.json
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc      6269 Apr 12 03:49 heartbeat.json
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc      8192 Apr 12 03:49 boinc_mmap_file
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc        26 Apr 12 03:49 wrapper_checkpoint.txt
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc       823 Apr 12 03:49 pilotlog.txt
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc    209118 Apr 12 03:49 log.49263200._036972.job.log.1
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc       357 Apr 12 03:49 output.list
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc       410 Apr 12 03:49 runtime_log
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc    563200 Apr 12 03:49 result.tar.gz
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc      8828 Apr 12 03:49 runtime_log.err
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc       658 Apr 12 03:49 1d7087af4276.diag
[2026-04-12 03:49:45] -rw-r--r--. 1 boinc boinc     22134 Apr 12 03:49 stderr.txt
[2026-04-12 03:49:45] HITS file was successfully produced:
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc 197249467 Apr 12 03:48 shared/HITS.pool.root.1
[2026-04-12 03:49:45]  *** Contents of shared directory: ***
[2026-04-12 03:49:45] total 413172
[2026-04-12 03:49:45] -rw-r--r--. 2 boinc boinc 224587924 Apr 12 03:20 ATLAS.root_0
[2026-04-12 03:49:45] -rw-r--r--. 2 boinc boinc     15665 Apr 12 03:20 start_atlas.sh
[2026-04-12 03:49:45] -rw-r--r--. 2 boinc boinc    656935 Apr 12 03:20 input.tar.gz
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc 197249467 Apr 12 03:48 HITS.pool.root.1
[2026-04-12 03:49:45] -rw-------. 1 boinc boinc    563200 Apr 12 03:49 result.tar.gz
03:49:46 (2962229): run_atlas exited; CPU time 18082.904833
03:49:46 (2962229): called boinc_finish(0)

</stderr_txt>
]]>

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