Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:52:56 (1538041): wrapper (7.7.26015): starting
17:52:56 (1538041): wrapper: running run_atlas (--nthreads 3)
[2026-04-11 17:52:56] Arguments: --nthreads 3
[2026-04-11 17:52:56] Threads: 3
[2026-04-11 17:52:56] Checking for CVMFS
[2026-04-11 17:52:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 17:52:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 17:52:57] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 17:52:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 17:52:57] 2.9.2.0 1148888 2458 77656 158349 2 50 33002540 36864001 0 130560 0 1486775 99.988 98803 14163 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 17:52:57] CVMFS is ok
[2026-04-11 17:52:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 17:52:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 17:52:57] Further information can be found at the LHC@home message board.
[2026-04-11 17:52:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 17:52:57] Checking for apptainer binary...
[2026-04-11 17:52:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 17:52:57] Running /usr/bin/apptainer --version
[2026-04-11 17:52:57] apptainer version 1.4.1-1.1
[2026-04-11 17:52:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 17:52:57] belleA253
[2026-04-11 17:52:57] apptainer works
[2026-04-11 17:52:57] Set ATHENA_PROC_NUMBER=3
[2026-04-11 17:52:57] Set ATHENA_CORE_NUMBER=3
[2026-04-11 17:52:57] Starting ATLAS job with PandaID=7086870839
[2026-04-11 17:52:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 19:19:19]  *** The last 200 lines of the pilot log: ***
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | job 7086870839 has completed (purged errors)
[2026-04-11 19:19:19] 2026-04-11 17:18:12,576 | INFO     | overall cleanup function is called
[2026-04-11 19:19:19] 2026-04-11 17:18:13,580 | INFO     | --- collectZombieJob: --- 10, [1546517]
[2026-04-11 19:19:19] 2026-04-11 17:18:13,581 | INFO     | zombie collector waiting for pid 1546517
[2026-04-11 19:19:19] 2026-04-11 17:18:13,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 19:19:19] 2026-04-11 17:18:13,581 | INFO     | collected zombie processes
[2026-04-11 19:19:19] 2026-04-11 17:18:13,581 | INFO     | will attempt to kill all subprocesses of pid=1546517
[2026-04-11 19:19:19] 2026-04-11 17:18:13,681 | INFO     | PID=1542093 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 19:19:19] 2026-04-11 17:18:13,682 | INFO     | process IDs to be killed: [1546517] (in reverse order)
[2026-04-11 19:19:19] 2026-04-11 17:18:13,708 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 19:19:19] 2026-04-11 17:18:13,708 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 19:19:19] 2026-04-11 17:18:13,709 | INFO     | did not find any defunct processes belonging to 1546517
[2026-04-11 19:19:19] 2026-04-11 17:18:13,710 | INFO     | did not find any defunct processes belonging to 1546517
[2026-04-11 19:19:19] 2026-04-11 17:18:13,710 | INFO     | Ready for new job
[2026-04-11 19:19:19] 2026-04-11 17:18:13,711 | INFO     | **************************************
[2026-04-11 19:19:19] 2026-04-11 17:18:13,711 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 19:19:19] 2026-04-11 17:18:13,711 | INFO     | **************************************
[2026-04-11 19:19:19] 2026-04-11 17:18:13,711 | INFO     | 
[2026-04-11 19:19:19] 2026-04-11 17:18:13,712 | INFO     | architecture information:
[2026-04-11 19:19:19] 2026-04-11 17:18:13,712 | INFO     | executing command: cat /etc/os-release
[2026-04-11 19:19:19] 2026-04-11 17:18:13,721 | INFO     | cat /etc/os-release:
[2026-04-11 19:19:19] NAME="CentOS Linux"
[2026-04-11 19:19:19] VERSION="7 (Core)"
[2026-04-11 19:19:19] ID="centos"
[2026-04-11 19:19:19] ID_LIKE="rhel fedora"
[2026-04-11 19:19:19] VERSION_ID="7"
[2026-04-11 19:19:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 19:19:19] ANSI_COLOR="0;31"
[2026-04-11 19:19:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 19:19:19] HOME_URL="https://www.centos.org/"
[2026-04-11 19:19:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 19:19:19] 
[2026-04-11 19:19:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 19:19:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 19:19:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 19:19:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 19:19:19] 
[2026-04-11 19:19:19] 2026-04-11 17:18:13,722 | INFO     | **************************************
[2026-04-11 19:19:19] 2026-04-11 17:18:14,225 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 19:19:19] 2026-04-11 17:18:14,239 | INFO     | sufficient remaining disk space (371540885504 B)
[2026-04-11 19:19:19] 2026-04-11 17:18:14,239 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 19:19:19] 2026-04-11 17:18:14,239 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 19:19:19] 2026-04-11 17:18:14,239 | INFO     | update_server=False
[2026-04-11 19:19:19] 2026-04-11 17:18:14,239 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 19:19:19] 2026-04-11 17:18:14,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 19:19:19] 2026-04-11 17:18:14,240 | INFO     | aborting loop
[2026-04-11 19:19:19] 2026-04-11 17:18:14,240 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-04-11 19:19:19] 2026-04-11 17:18:14,240 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 19:19:19] 2026-04-11 17:18:14,240 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 19:19:19] 2026-04-11 17:18:14,240 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 19:19:19] 2026-04-11 17:18:14,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 19:19:19] 2026-04-11 17:18:14,282 | INFO     | all data control threads have been joined
[2026-04-11 19:19:19] 2026-04-11 17:18:14,390 | INFO     | all job control threads have been joined
[2026-04-11 19:19:19] 2026-04-11 17:18:14,415 | INFO     | job.realtimelogging is not enabled
[2026-04-11 19:19:19] 2026-04-11 17:18:15,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 19:19:19] 2026-04-11 17:18:15,064 | INFO     | all payload control threads have been joined
[2026-04-11 19:19:19] 2026-04-11 17:18:15,245 | INFO     | [job] retrieve thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:15,245 | INFO     | [job] queue monitor thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:15,246 | INFO     | [job] job monitor thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:15,288 | INFO     | [data] control thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:15,395 | INFO     | [job] control thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:15,420 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:15,808 | INFO     | [payload] failed_post thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:15,962 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:16,069 | INFO     | [payload] control thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:16,153 | INFO     | [job] validate thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:16,216 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:16,328 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:16,389 | INFO     | [payload] validate_post thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:16,490 | INFO     | [data] copytool_in thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:17,033 | INFO     | [data] copytool_out thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:18:17,613 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 19:19:19] 2026-04-11 17:18:21,621 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 19:19:19] 2026-04-11 17:19:13,153 | INFO     | [monitor] cgroup control has ended
[2026-04-11 19:19:19] 2026-04-11 17:19:14,667 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140451306288960)>', '<ExcThread(monitor, started 140450564388608)>']
[2026-04-11 19:19:19] 2026-04-11 17:19:15,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 19:19:19] 2026-04-11 17:19:15,556 | INFO     | [monitor] control thread has ended
[2026-04-11 19:19:19] 2026-04-11 17:19:19,693 | INFO     | all workflow threads have been joined
[2026-04-11 19:19:19] 2026-04-11 17:19:19,693 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 19:19:19] 2026-04-11 17:19:19,693 | INFO     | traces error code: 0
[2026-04-11 19:19:19] 2026-04-11 17:19:19,694 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 19:19:19] 2026-04-11 17:19:19,747 [wrapper] ==== pilot stdout END ====
[2026-04-11 19:19:19] 2026-04-11 17:19:19,749 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 19:19:19] 2026-04-11 17:19:19,752 [wrapper] pilotpid: 1542093
[2026-04-11 19:19:19] 2026-04-11 17:19:19,754 [wrapper] Pilot exit status: 0
[2026-04-11 19:19:19] 2026-04-11 17:19:19,763 [wrapper] pandaids: 7086870839
[2026-04-11 19:19:19] 2026-04-11 17:19:19,780 [wrapper] cleanup supervisor_pilot 1551561 1542094
[2026-04-11 19:19:19] 2026-04-11 17:19:19,783 [wrapper] Test setup, not cleaning
[2026-04-11 19:19:19] 2026-04-11 17:19:19,785 [wrapper] apfmon messages muted
[2026-04-11 19:19:19] 2026-04-11 17:19:19,788 [wrapper] ==== wrapper stdout END ====
[2026-04-11 19:19:19] 2026-04-11 17:19:19,790 [wrapper] ==== wrapper stderr END ====
[2026-04-11 19:19:19]  *** Error codes and diagnostics ***
[2026-04-11 19:19:19]     "exeErrorCode": 0,
[2026-04-11 19:19:19]     "pilotErrorCode": 0,
[2026-04-11 19:19:19]  *** Listing of results directory ***
[2026-04-11 19:19:19] total 418384
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc    644190 Apr 11 05:16 pilot3.tar.gz
[2026-04-11 19:19:19] -rwx------ 1 boinc boinc     36322 Apr 11 06:13 runpilot2-wrapper.sh
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc      5094 Apr 11 06:16 queuedata.json
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc       100 Apr 11 17:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 19:19:19] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 17:52 run_atlas
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc       105 Apr 11 17:52 job.xml
[2026-04-11 19:19:19] -rw-r--r-- 2 boinc boinc 226718448 Apr 11 17:52 EVNT.49263189._000928.pool.root.1
[2026-04-11 19:19:19] -rw-r--r-- 2 boinc boinc    656931 Apr 11 17:52 input.tar.gz
[2026-04-11 19:19:19] -rw-r--r-- 2 boinc boinc     15665 Apr 11 17:52 start_atlas.sh
[2026-04-11 19:19:19] drwxrwx--x 2 boinc boinc      4096 Apr 11 17:52 shared
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc         0 Apr 11 17:52 boinc_setup_complete
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc      6363 Apr 11 17:52 init_data.xml
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc         0 Apr 11 17:52 boinc_lockfile
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc      2577 Apr 11 17:52 pandaJob.out
[2026-04-11 19:19:19] -rw------- 1 boinc boinc    997828 Apr 11 17:53 agis_schedconf.cvmfs.json
[2026-04-11 19:19:19] -rw------- 1 boinc boinc   1511579 Apr 11 17:53 agis_ddmendpoints.agis.ALL.json
[2026-04-11 19:19:19] -rw------- 1 boinc boinc       426 Apr 11 17:53 workernode_map.json
[2026-04-11 19:19:19] drwx------ 5 boinc boinc      4096 Apr 11 17:53 pilot3
[2026-04-11 19:19:19] -rw------- 1 boinc boinc        95 Apr 11 19:17 pilot_heartbeat.json
[2026-04-11 19:19:19] -rw------- 1 boinc boinc 196213973 Apr 11 19:17 HITS.49263191._043629.pool.root.1
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc       487 Apr 11 19:17 boinc_task_state.xml
[2026-04-11 19:19:19] -rw------- 1 boinc boinc      1017 Apr 11 19:18 memory_monitor_summary.json
[2026-04-11 19:19:19] -rw------- 1 boinc boinc    226426 Apr 11 19:18 log.49263191._043629.job.log.tgz.1
[2026-04-11 19:19:19] -rw------- 1 boinc boinc      6342 Apr 11 19:18 heartbeat_new.json
[2026-04-11 19:19:19] -rw------- 1 boinc boinc      6233 Apr 11 19:18 heartbeat.json
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc        27 Apr 11 19:19 wrapper_checkpoint.txt
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc      8192 Apr 11 19:19 boinc_mmap_file
[2026-04-11 19:19:19] -rw------- 1 boinc boinc      4623 Apr 11 19:19 pilotlog.txt
[2026-04-11 19:19:19] -rw------- 1 boinc boinc    498015 Apr 11 19:19 log.49263191._043629.job.log.1
[2026-04-11 19:19:19] -rw------- 1 boinc boinc       357 Apr 11 19:19 output.list
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc       410 Apr 11 19:19 runtime_log
[2026-04-11 19:19:19] -rw------- 1 boinc boinc    737280 Apr 11 19:19 result.tar.gz
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc      8533 Apr 11 19:19 runtime_log.err
[2026-04-11 19:19:19] -rw------- 1 boinc boinc       660 Apr 11 19:19 ca678ffe9ee0.diag
[2026-04-11 19:19:19] -rw-r--r-- 1 boinc boinc     12760 Apr 11 19:19 stderr.txt
[2026-04-11 19:19:19] HITS file was successfully produced:
[2026-04-11 19:19:19] -rw------- 1 boinc boinc 196213973 Apr 11 19:17 shared/HITS.pool.root.1
[2026-04-11 19:19:19]  *** Contents of shared directory: ***
[2026-04-11 19:19:19] total 414408
[2026-04-11 19:19:19] -rw-r--r-- 2 boinc boinc 226718448 Apr 11 17:52 ATLAS.root_0
[2026-04-11 19:19:19] -rw-r--r-- 2 boinc boinc    656931 Apr 11 17:52 input.tar.gz
[2026-04-11 19:19:19] -rw-r--r-- 2 boinc boinc     15665 Apr 11 17:52 start_atlas.sh
[2026-04-11 19:19:19] -rw------- 1 boinc boinc 196213973 Apr 11 19:17 HITS.pool.root.1
[2026-04-11 19:19:19] -rw------- 1 boinc boinc    737280 Apr 11 19:19 result.tar.gz
19:19:21 (1538041): run_atlas exited; CPU time 14244.840145
19:19:21 (1538041): called boinc_finish(0)

</stderr_txt>
]]>

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