Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:17:06 (3980582): wrapper (7.7.26015): starting
17:17:06 (3980582): wrapper: running run_atlas (--nthreads 2)
[2026-04-11 17:17:06] Arguments: --nthreads 2
[2026-04-11 17:17:06] Threads: 2
[2026-04-11 17:17:06] Checking for CVMFS
[2026-04-11 17:17:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 17:17:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 17:17:06] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 17:17:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 17:17:06] 2.9.2.0 3735197 2366 55812 158349 3 49 19963364 36864001 0 130560 0 1002757 99.983 94468 17631 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 17:17:06] CVMFS is ok
[2026-04-11 17:17:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 17:17:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 17:17:06] Further information can be found at the LHC@home message board.
[2026-04-11 17:17:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 17:17:06] Checking for apptainer binary...
[2026-04-11 17:17:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 17:17:06] Running /usr/bin/apptainer --version
[2026-04-11 17:17:06] apptainer version 1.4.1-1.1
[2026-04-11 17:17:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 17:17:06] magicA244
[2026-04-11 17:17:06] apptainer works
[2026-04-11 17:17:06] Set ATHENA_PROC_NUMBER=2
[2026-04-11 17:17:06] Set ATHENA_CORE_NUMBER=2
[2026-04-11 17:17:06] Starting ATLAS job with PandaID=7086870564
[2026-04-11 17:17:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 19:30:34]  *** The last 200 lines of the pilot log: ***
[2026-04-11 19:30:34] 2026-04-11 17:29:58,810 | INFO     | collected zombie processes
[2026-04-11 19:30:34] 2026-04-11 17:29:58,810 | INFO     | will attempt to kill all subprocesses of pid=3989019
[2026-04-11 19:30:34] 2026-04-11 17:29:58,837 | INFO     | process IDs to be killed: [3989019] (in reverse order)
[2026-04-11 19:30:34] 2026-04-11 17:29:58,858 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 19:30:34] 2026-04-11 17:29:58,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 19:30:34] 2026-04-11 17:29:58,859 | INFO     | did not find any defunct processes belonging to 3989019
[2026-04-11 19:30:34] 2026-04-11 17:29:58,859 | INFO     | did not find any defunct processes belonging to 3989019
[2026-04-11 19:30:34] 2026-04-11 17:29:58,860 | INFO     | Ready for new job
[2026-04-11 19:30:34] 2026-04-11 17:29:58,860 | INFO     | **************************************
[2026-04-11 19:30:34] 2026-04-11 17:29:58,860 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 19:30:34] 2026-04-11 17:29:58,860 | INFO     | **************************************
[2026-04-11 19:30:34] 2026-04-11 17:29:58,860 | INFO     | 
[2026-04-11 19:30:34] 2026-04-11 17:29:58,860 | INFO     | architecture information:
[2026-04-11 19:30:34] 2026-04-11 17:29:58,861 | INFO     | executing command: cat /etc/os-release
[2026-04-11 19:30:34] 2026-04-11 17:29:58,869 | INFO     | cat /etc/os-release:
[2026-04-11 19:30:34] NAME="CentOS Linux"
[2026-04-11 19:30:34] VERSION="7 (Core)"
[2026-04-11 19:30:34] ID="centos"
[2026-04-11 19:30:34] ID_LIKE="rhel fedora"
[2026-04-11 19:30:34] VERSION_ID="7"
[2026-04-11 19:30:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 19:30:34] ANSI_COLOR="0;31"
[2026-04-11 19:30:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 19:30:34] HOME_URL="https://www.centos.org/"
[2026-04-11 19:30:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 19:30:34] 
[2026-04-11 19:30:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 19:30:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 19:30:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 19:30:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 19:30:34] 
[2026-04-11 19:30:34] 2026-04-11 17:29:58,869 | INFO     | **************************************
[2026-04-11 19:30:34] 2026-04-11 17:29:59,372 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 19:30:34] 2026-04-11 17:29:59,383 | INFO     | sufficient remaining disk space (504228741120 B)
[2026-04-11 19:30:34] 2026-04-11 17:29:59,383 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 19:30:34] 2026-04-11 17:29:59,383 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 19:30:34] 2026-04-11 17:29:59,383 | INFO     | update_server=False
[2026-04-11 19:30:34] 2026-04-11 17:29:59,383 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 19:30:34] 2026-04-11 17:29:59,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 19:30:34] 2026-04-11 17:29:59,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 19:30:34] 2026-04-11 17:29:59,669 | INFO     | all data control threads have been joined
[2026-04-11 19:30:34] 2026-04-11 17:29:59,821 | INFO     | all payload control threads have been joined
[2026-04-11 19:30:34] 2026-04-11 17:30:00,190 | INFO     | all job control threads have been joined
[2026-04-11 19:30:34] 2026-04-11 17:30:00,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 19:30:34] 2026-04-11 17:30:00,317 | INFO     | aborting loop
[2026-04-11 19:30:34] 2026-04-11 17:30:00,388 | INFO     | [job] retrieve thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:00,388 | INFO     | [job] queue monitor thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:00,547 | INFO     | [payload] validate_post thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:00,674 | INFO     | [data] control thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:00,826 | INFO     | [payload] control thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:00,875 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:00,893 | INFO     | [job] validate thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:01,053 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:01,174 | INFO     | [data] copytool_in thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:01,195 | INFO     | [job] control thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:01,279 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:01,322 | INFO     | [job] job monitor thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:01,389 | INFO     | [data] copytool_out thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:01,602 | INFO     | [payload] failed_post thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:02,361 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 19:30:34] 2026-04-11 17:30:06,366 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:10,167 | INFO     | job.realtimelogging is not enabled
[2026-04-11 19:30:34] 2026-04-11 17:30:11,172 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 19:30:34] 2026-04-11 17:30:29,152 | INFO     | [monitor] cgroup control has ended
[2026-04-11 19:30:34] 2026-04-11 17:30:29,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995377145664)>', '<ExcThread(monitor, started 139994492548864)>']
[2026-04-11 19:30:34] 2026-04-11 17:30:29,987 | INFO     | PID=3984607 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 19:30:34] 2026-04-11 17:30:29,987 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 19:30:34] 2026-04-11 17:30:29,987 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 19:30:34] 2026-04-11 17:30:29,987 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 19:30:34] 2026-04-11 17:30:29,987 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 19:30:34] 2026-04-11 17:30:29,987 | INFO     | [monitor] control thread has ended
[2026-04-11 19:30:34] 2026-04-11 17:30:34,283 | INFO     | all workflow threads have been joined
[2026-04-11 19:30:34] 2026-04-11 17:30:34,284 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 19:30:34] 2026-04-11 17:30:34,284 | INFO     | traces error code: 0
[2026-04-11 19:30:34] 2026-04-11 17:30:34,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 19:30:34] 2026-04-11 17:30:34,328 [wrapper] ==== pilot stdout END ====
[2026-04-11 19:30:34] 2026-04-11 17:30:34,330 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 19:30:34] 2026-04-11 17:30:34,333 [wrapper] pilotpid: 3984607
[2026-04-11 19:30:34] 2026-04-11 17:30:34,337 [wrapper] Pilot exit status: 0
[2026-04-11 19:30:34] 2026-04-11 17:30:34,343 [wrapper] pandaids: 7086870564
[2026-04-11 19:30:34] 2026-04-11 17:30:34,356 [wrapper] cleanup supervisor_pilot 3993971 3984608
[2026-04-11 19:30:34] 2026-04-11 17:30:34,358 [wrapper] Test setup, not cleaning
[2026-04-11 19:30:34] 2026-04-11 17:30:34,360 [wrapper] apfmon messages muted
[2026-04-11 19:30:34] 2026-04-11 17:30:34,362 [wrapper] ==== wrapper stdout END ====
[2026-04-11 19:30:34] 2026-04-11 17:30:34,364 [wrapper] ==== wrapper stderr END ====
[2026-04-11 19:30:34]  *** Error codes and diagnostics ***
[2026-04-11 19:30:34]     "exeErrorCode": 0,
[2026-04-11 19:30:34]     "pilotErrorCode": 0,
[2026-04-11 19:30:34]  *** Listing of results directory ***
[2026-04-11 19:30:34] total 418396
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc    644190 Apr 11 05:16 pilot3.tar.gz
[2026-04-11 19:30:34] -rwx------ 1 boinc boinc     36322 Apr 11 06:11 runpilot2-wrapper.sh
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc      5094 Apr 11 06:14 queuedata.json
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc       100 Apr 11 17:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 19:30:34] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 17:17 run_atlas
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc       105 Apr 11 17:17 job.xml
[2026-04-11 19:30:34] -rw-r--r-- 2 boinc boinc 223344984 Apr 11 17:17 EVNT.49263206._000834.pool.root.1
[2026-04-11 19:30:34] -rw-r--r-- 2 boinc boinc    656931 Apr 11 17:17 input.tar.gz
[2026-04-11 19:30:34] -rw-r--r-- 2 boinc boinc     15665 Apr 11 17:17 start_atlas.sh
[2026-04-11 19:30:34] drwxrwx--x 2 boinc boinc      4096 Apr 11 17:17 shared
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc         0 Apr 11 17:17 boinc_setup_complete
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc      6124 Apr 11 17:17 init_data.xml
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc         0 Apr 11 17:17 boinc_lockfile
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc      2575 Apr 11 17:17 pandaJob.out
[2026-04-11 19:30:34] -rw------- 1 boinc boinc    997828 Apr 11 17:17 agis_schedconf.cvmfs.json
[2026-04-11 19:30:34] -rw------- 1 boinc boinc   1511579 Apr 11 17:17 agis_ddmendpoints.agis.ALL.json
[2026-04-11 19:30:34] -rw------- 1 boinc boinc       419 Apr 11 17:17 workernode_map.json
[2026-04-11 19:30:34] drwx------ 5 boinc boinc      4096 Apr 11 17:17 pilot3
[2026-04-11 19:30:34] -rw------- 1 boinc boinc 199054486 Apr 11 19:29 HITS.49263208._034464.pool.root.1
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc       487 Apr 11 19:29 boinc_task_state.xml
[2026-04-11 19:30:34] -rw------- 1 boinc boinc        95 Apr 11 19:29 pilot_heartbeat.json
[2026-04-11 19:30:34] -rw------- 1 boinc boinc      1017 Apr 11 19:29 memory_monitor_summary.json
[2026-04-11 19:30:34] -rw------- 1 boinc boinc    242144 Apr 11 19:29 log.49263208._034464.job.log.tgz.1
[2026-04-11 19:30:34] -rw------- 1 boinc boinc      6326 Apr 11 19:29 heartbeat_new.json
[2026-04-11 19:30:34] -rw------- 1 boinc boinc      6217 Apr 11 19:29 heartbeat.json
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc        27 Apr 11 19:30 wrapper_checkpoint.txt
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc      8192 Apr 11 19:30 boinc_mmap_file
[2026-04-11 19:30:34] -rw------- 1 boinc boinc      4819 Apr 11 19:30 pilotlog.txt
[2026-04-11 19:30:34] -rw------- 1 boinc boinc    753820 Apr 11 19:30 log.49263208._034464.job.log.1
[2026-04-11 19:30:34] -rw------- 1 boinc boinc       357 Apr 11 19:30 output.list
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc       410 Apr 11 19:30 runtime_log
[2026-04-11 19:30:34] -rw------- 1 boinc boinc   1013760 Apr 11 19:30 result.tar.gz
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc      8533 Apr 11 19:30 runtime_log.err
[2026-04-11 19:30:34] -rw------- 1 boinc boinc       662 Apr 11 19:30 ca083c74acb2.diag
[2026-04-11 19:30:34] -rw-r--r-- 1 boinc boinc     10158 Apr 11 19:30 stderr.txt
[2026-04-11 19:30:34] HITS file was successfully produced:
[2026-04-11 19:30:34] -rw------- 1 boinc boinc 199054486 Apr 11 19:29 shared/HITS.pool.root.1
[2026-04-11 19:30:34]  *** Contents of shared directory: ***
[2026-04-11 19:30:34] total 414156
[2026-04-11 19:30:34] -rw-r--r-- 2 boinc boinc 223344984 Apr 11 17:17 ATLAS.root_0
[2026-04-11 19:30:34] -rw-r--r-- 2 boinc boinc    656931 Apr 11 17:17 input.tar.gz
[2026-04-11 19:30:34] -rw-r--r-- 2 boinc boinc     15665 Apr 11 17:17 start_atlas.sh
[2026-04-11 19:30:34] -rw------- 1 boinc boinc 199054486 Apr 11 19:29 HITS.pool.root.1
[2026-04-11 19:30:34] -rw------- 1 boinc boinc   1013760 Apr 11 19:30 result.tar.gz
19:30:36 (3980582): run_atlas exited; CPU time 15298.439026
19:30:36 (3980582): called boinc_finish(0)

</stderr_txt>
]]>

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