Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
06:39:44 (18626): wrapper (7.7.26015): starting
06:39:44 (18626): wrapper: running run_atlas (--nthreads 4)
[2026-04-11 06:39:44] Arguments: --nthreads 4
[2026-04-11 06:39:44] Threads: 4
[2026-04-11 06:39:44] Checking for CVMFS
[2026-04-11 06:39:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 06:39:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 06:39:47] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 06:39:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 06:39:47] 2.11.5.0 18834 0 25492 158333 3 1 3094052 4096001 0 130560 0 0 0.000 1337 5689 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2026-04-11 06:39:47] CVMFS is ok
[2026-04-11 06:39:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 06:39:47] Checking for apptainer binary...
[2026-04-11 06:39:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 06:39:47] Running /usr/bin/apptainer --version
[2026-04-11 06:39:47] apptainer version 1.0.3
[2026-04-11 06:39:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 06:39:47] TeeC28
[2026-04-11 06:39:47] apptainer works
[2026-04-11 06:39:47] Set ATHENA_PROC_NUMBER=4
[2026-04-11 06:39:47] Set ATHENA_CORE_NUMBER=4
[2026-04-11 06:39:47] Starting ATLAS job with PandaID=7086870880
[2026-04-11 06:39:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/users/jmp/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 09:28:29]  *** The last 200 lines of the pilot log: ***
[2026-04-11 09:28:29] 2026-04-11 08:27:43,074 | WARNING  | process 27274 can no longer be monitored (due to stat problems) - aborting
[2026-04-11 09:28:29] 2026-04-11 08:27:43,074 | INFO     | using path: /home/m/users/jmp/BOINC/slots/3/PanDA_Pilot-7086870880/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 09:28:29] 2026-04-11 08:27:43,134 | INFO     | number of running child processes to parent process 27274: 1
[2026-04-11 09:28:29] 2026-04-11 08:27:43,135 | INFO     | maximum number of monitored processes: 6
[2026-04-11 09:28:29] 2026-04-11 08:27:44,037 | INFO     | job 7086870880 has state=finished
[2026-04-11 09:28:29] 2026-04-11 08:27:44,038 | INFO     | preparing for final server update for job 7086870880 in state='finished'
[2026-04-11 09:28:29] 2026-04-11 08:27:44,038 | INFO     | reading metadata from: /home/m/users/jmp/BOINC/slots/3/PanDA_Pilot-7086870880/jobReport.json
[2026-04-11 09:28:29] 2026-04-11 08:27:44,045 | INFO     | added worker_node to metadata from /home/m/users/jmp/BOINC/slots/3/workernode_map.json
[2026-04-11 09:28:29] 2026-04-11 08:27:44,046 | INFO     | this job has now completed (state=finished)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,046 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,046 | INFO     | log transfer has been attempted: DONE
[2026-04-11 09:28:29] 2026-04-11 08:27:44,046 | INFO     | job 7086870880 has finished - writing final server update
[2026-04-11 09:28:29] 2026-04-11 08:27:44,046 | INFO     | total number of processed events: 400 (read)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,067 | INFO     | using path: /home/m/users/jmp/BOINC/slots/3/PanDA_Pilot-7086870880/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,068 | INFO     | extracted standard info from prmon json
[2026-04-11 09:28:29] 2026-04-11 08:27:44,068 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 09:28:29] 2026-04-11 08:27:44,068 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 09:28:29] 2026-04-11 08:27:44,069 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 09:28:29] 2026-04-11 08:27:44,078 | INFO     | fitting pss+swap vs Time
[2026-04-11 09:28:29] 2026-04-11 08:27:44,079 | INFO     | sum of square deviations: 1392881930.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,084 | INFO     | sum of deviations: -17345114784.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,084 | INFO     | mean x (centered): 0.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,084 | INFO     | mean y: 2382755.242424242
[2026-04-11 09:28:29] 2026-04-11 08:27:44,085 | INFO     | intersect: 2382755.242424242
[2026-04-11 09:28:29] 2026-04-11 08:27:44,086 | INFO     | chi2: 1.674904298577861
[2026-04-11 09:28:29] 2026-04-11 08:27:44,087 | INFO     | sum of square deviations: 1270051720.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,091 | INFO     | sum of deviations: -16560204665.000002
[2026-04-11 09:28:29] 2026-04-11 08:27:44,091 | INFO     | mean x (centered): 0.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,091 | INFO     | mean y: 2383729.9625
[2026-04-11 09:28:29] 2026-04-11 08:27:44,091 | INFO     | intersect: 2383729.9625
[2026-04-11 09:28:29] 2026-04-11 08:27:44,092 | INFO     | chi2: 1.6716486964635147
[2026-04-11 09:28:29] 2026-04-11 08:27:44,093 | INFO     | current chi2=1.6716486964635147 (change=0.19437541100770223 %)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,093 | INFO     | right removable region: 159
[2026-04-11 09:28:29] 2026-04-11 08:27:44,094 | INFO     | sum of square deviations: 1270051720.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,097 | INFO     | sum of deviations: -35801203017.5
[2026-04-11 09:28:29] 2026-04-11 08:27:44,097 | INFO     | mean x (centered): 0.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,097 | INFO     | mean y: 2405204.76875
[2026-04-11 09:28:29] 2026-04-11 08:27:44,098 | INFO     | intersect: 2405204.76875
[2026-04-11 09:28:29] 2026-04-11 08:27:44,098 | INFO     | chi2: 0.3384380846368409
[2026-04-11 09:28:29] 2026-04-11 08:27:44,099 | INFO     | current chi2=0.3384380846368409 (change=79.79358671870362 %)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,099 | INFO     | sum of square deviations: 1154663510.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,101 | INFO     | sum of deviations: -28600102966.999996
[2026-04-11 09:28:29] 2026-04-11 08:27:44,102 | INFO     | mean x (centered): 0.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,102 | INFO     | mean y: 2395657.1032258063
[2026-04-11 09:28:29] 2026-04-11 08:27:44,102 | INFO     | intersect: 2395657.1032258063
[2026-04-11 09:28:29] 2026-04-11 08:27:44,102 | INFO     | chi2: 0.31411949922479937
[2026-04-11 09:28:29] 2026-04-11 08:27:44,103 | INFO     | current chi2=0.31411949922479937 (change=7.1855345234377035 %)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,103 | INFO     | left removable region: 10
[2026-04-11 09:28:29] 2026-04-11 08:27:44,103 | INFO     | sum of square deviations: 1025693650.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,105 | INFO     | sum of deviations: -27350032163.000015
[2026-04-11 09:28:29] 2026-04-11 08:27:44,105 | INFO     | mean x (centered): 0.0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,105 | INFO     | mean y: 2397431.644295302
[2026-04-11 09:28:29] 2026-04-11 08:27:44,105 | INFO     | intersect: 2397431.644295302
[2026-04-11 09:28:29] 2026-04-11 08:27:44,106 | INFO     | chi2: 0.30806227746194026
[2026-04-11 09:28:29] 2026-04-11 08:27:44,106 | INFO     | current memory leak: -26.66 B/s (using 149 data points, chi2=0.31)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,106 | INFO     | could have reported an average CPU frequency of 3199 MHz (9 samples)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | ..............................
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | . Timing measurements:
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | . get job = 0 s
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | . initial setup = 6 s
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | . payload setup = 7 s
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | . stage-in = 0 s
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | . payload execution = 10033 s
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | . stage-out = 0 s
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | . log creation = 0 s
[2026-04-11 09:28:29] 2026-04-11 08:27:44,107 | INFO     | ..............................
[2026-04-11 09:28:29] 2026-04-11 08:27:44,207 | INFO     | 
[2026-04-11 09:28:29] 2026-04-11 08:27:44,207 | INFO     | job summary report
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | --------------------------------------------------
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | PanDA job id: 7086870880
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | task id: 49263191
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | errors: (none)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | pilot state: finished 
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | transexitcode: 0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | exeerrorcode: 0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | exeerrordiag: 
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | exitcode: 0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | exitmsg: OK
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | cpuconsumptiontime: 38461 s
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | nevents: 400
[2026-04-11 09:28:29] 2026-04-11 08:27:44,208 | INFO     | neventsw: 0
[2026-04-11 09:28:29] 2026-04-11 08:27:44,209 | INFO     | pid: 27274
[2026-04-11 09:28:29] 2026-04-11 08:27:44,209 | INFO     | pgrp: 27274
[2026-04-11 09:28:29] 2026-04-11 08:27:44,209 | INFO     | corecount: 4
[2026-04-11 09:28:29] 2026-04-11 08:27:44,209 | INFO     | event service: False
[2026-04-11 09:28:29] 2026-04-11 08:27:44,209 | INFO     | sizes: {0: 2281473, 11: 2281473, 10044: 2310097, 10045: 2319169, 10046: 2319371}
[2026-04-11 09:28:29] 2026-04-11 08:27:44,209 | INFO     | --------------------------------------------------
[2026-04-11 09:28:29] 2026-04-11 08:27:44,209 | INFO     | 
[2026-04-11 09:28:29] 2026-04-11 08:27:44,209 | INFO     | executing command: ls -lF /home/m/users/jmp/BOINC/slots/3
[2026-04-11 09:28:29] 2026-04-11 08:27:44,218 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,218 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,218 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,218 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,219 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 09:28:29] 2026-04-11 08:27:44,220 | INFO     | job 7086870880 has completed (purged errors)
[2026-04-11 09:28:29] 2026-04-11 08:27:44,220 | INFO     | overall cleanup function is called
[2026-04-11 09:28:29] 2026-04-11 08:27:45,226 | INFO     | --- collectZombieJob: --- 10, [27274]
[2026-04-11 09:28:29] 2026-04-11 08:27:45,227 | INFO     | zombie collector waiting for pid 27274
[2026-04-11 09:28:29] 2026-04-11 08:27:45,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 09:28:29] 2026-04-11 08:27:45,227 | INFO     | collected zombie processes
[2026-04-11 09:28:29] 2026-04-11 08:27:45,228 | INFO     | will attempt to kill all subprocesses of pid=27274
[2026-04-11 09:28:29] 2026-04-11 08:27:45,302 | INFO     | process IDs to be killed: [27274] (in reverse order)
[2026-04-11 09:28:29] 2026-04-11 08:27:45,326 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 09:28:29] 2026-04-11 08:27:45,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 09:28:29] 2026-04-11 08:27:45,329 | INFO     | did not find any defunct processes belonging to 27274
[2026-04-11 09:28:29] 2026-04-11 08:27:45,330 | INFO     | did not find any defunct processes belonging to 27274
[2026-04-11 09:28:29] 2026-04-11 08:27:45,330 | INFO     | Ready for new job
[2026-04-11 09:28:29] 2026-04-11 08:27:45,331 | INFO     | **************************************
[2026-04-11 09:28:29] 2026-04-11 08:27:45,332 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 09:28:29] 2026-04-11 08:27:45,332 | INFO     | **************************************
[2026-04-11 09:28:29] 2026-04-11 08:27:45,332 | INFO     | 
[2026-04-11 09:28:29] 2026-04-11 08:27:45,349 | INFO     | architecture information:
[2026-04-11 09:28:29] 2026-04-11 08:27:45,349 | INFO     | executing command: cat /etc/os-release
[2026-04-11 09:28:29] 2026-04-11 08:27:45,357 | INFO     | cat /etc/os-release:
[2026-04-11 09:28:29] NAME="CentOS Linux"
[2026-04-11 09:28:29] VERSION="7 (Core)"
[2026-04-11 09:28:29] ID="centos"
[2026-04-11 09:28:29] ID_LIKE="rhel fedora"
[2026-04-11 09:28:29] VERSION_ID="7"
[2026-04-11 09:28:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 09:28:29] ANSI_COLOR="0;31"
[2026-04-11 09:28:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 09:28:29] HOME_URL="https://www.centos.org/"
[2026-04-11 09:28:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 09:28:29] 
[2026-04-11 09:28:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 09:28:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 09:28:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 09:28:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 09:28:29] 
[2026-04-11 09:28:29] 2026-04-11 08:27:45,357 | INFO     | **************************************
[2026-04-11 09:28:29] 2026-04-11 08:27:45,861 | INFO     | executing command: df -mP /home/m/users/jmp/BOINC/slots/3
[2026-04-11 09:28:29] 2026-04-11 08:27:45,872 | INFO     | sufficient remaining disk space (414108876800 B)
[2026-04-11 09:28:29] 2026-04-11 08:27:45,872 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 09:28:29] 2026-04-11 08:27:45,873 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 09:28:29] 2026-04-11 08:27:45,873 | INFO     | update_server=False
[2026-04-11 09:28:29] 2026-04-11 08:27:45,873 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 09:28:29] 2026-04-11 08:27:45,873 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 09:28:29] 2026-04-11 08:27:45,873 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 09:28:29] 2026-04-11 08:27:46,056 | INFO     | all payload control threads have been joined
[2026-04-11 09:28:29] 2026-04-11 08:27:46,252 | INFO     | all data control threads have been joined
[2026-04-11 09:28:29] 2026-04-11 08:27:46,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 09:28:29] 2026-04-11 08:27:46,649 | INFO     | aborting loop
[2026-04-11 09:28:29] 2026-04-11 08:27:46,879 | INFO     | [job] retrieve thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:46,880 | INFO     | [job] queue monitor thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,062 | INFO     | [payload] control thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,257 | INFO     | [data] control thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,289 | INFO     | all job control threads have been joined
[2026-04-11 09:28:29] 2026-04-11 08:27:47,560 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,565 | INFO     | [job] validate thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,607 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,655 | INFO     | [job] job monitor thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,880 | INFO     | [data] copytool_out thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,946 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:47,957 | INFO     | [payload] validate_post thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:48,015 | INFO     | [payload] failed_post thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:48,284 | INFO     | [data] copytool_in thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:48,294 | INFO     | [job] control thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:48,940 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 09:28:29] 2026-04-11 08:27:52,947 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:27:56,424 | INFO     | job.realtimelogging is not enabled
[2026-04-11 09:28:29] 2026-04-11 08:27:57,429 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 09:28:29] 2026-04-11 08:28:16,981 | INFO     | PID=22891 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-04-11 09:28:29] 2026-04-11 08:28:16,982 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 09:28:29] 2026-04-11 08:28:16,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 09:28:29] 2026-04-11 08:28:16,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 09:28:29] 2026-04-11 08:28:22,465 | INFO     | [monitor] cgroup control has ended
[2026-04-11 09:28:29] 2026-04-11 08:28:24,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671251642176)>', '<ExcThread(monitor, started 139670952322816)>']
[2026-04-11 09:28:29] 2026-04-11 08:28:25,024 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 09:28:29] 2026-04-11 08:28:25,024 | INFO     | [monitor] control thread has ended
[2026-04-11 09:28:29] 2026-04-11 08:28:29,603 | INFO     | all workflow threads have been joined
[2026-04-11 09:28:29] 2026-04-11 08:28:29,603 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 09:28:29] 2026-04-11 08:28:29,604 | INFO     | traces error code: 0
[2026-04-11 09:28:29] 2026-04-11 08:28:29,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 09:28:29] 2026-04-11 08:28:29,700 [wrapper] ==== pilot stdout END ====
[2026-04-11 09:28:29] 2026-04-11 08:28:29,702 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 09:28:29] 2026-04-11 08:28:29,704 [wrapper] pilotpid: 22891
[2026-04-11 09:28:29] 2026-04-11 08:28:29,705 [wrapper] Pilot exit status: 0
[2026-04-11 09:28:29] 2026-04-11 08:28:29,711 [wrapper] pandaids: 7086870880
[2026-04-11 09:28:29] 2026-04-11 08:28:29,727 [wrapper] cleanup supervisor_pilot   757 22892
[2026-04-11 09:28:29] 2026-04-11 08:28:29,729 [wrapper] Test setup, not cleaning
[2026-04-11 09:28:29] 2026-04-11 08:28:29,731 [wrapper] apfmon messages muted
[2026-04-11 09:28:29] 2026-04-11 08:28:29,733 [wrapper] ==== wrapper stdout END ====
[2026-04-11 09:28:29] 2026-04-11 08:28:29,735 [wrapper] ==== wrapper stderr END ====
[2026-04-11 09:28:29]  *** Error codes and diagnostics ***
[2026-04-11 09:28:29]     "exeErrorCode": 0,
[2026-04-11 09:28:29]     "pilotErrorCode": 0,
[2026-04-11 09:28:29]  *** Listing of results directory ***
[2026-04-11 09:28:29] total 416104
[2026-04-11 09:28:29] -rw-r--r-- 1 m m    644190 Apr 11 04:16 pilot3.tar.gz
[2026-04-11 09:28:29] -rw-r--r-- 1 m m      5094 Apr 11 05:10 queuedata.json
[2026-04-11 09:28:29] -rwx------ 1 m m     36322 Apr 11 05:11 runpilot2-wrapper.sh
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m       100 Apr 11 06:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 09:28:29] -rwxr-xr-x 1 m m      7986 Apr 11 06:39 run_atlas
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m       105 Apr 11 06:39 job.xml
[2026-04-11 09:28:29] -rw-r--r-- 2 m m 225990339 Apr 11 06:39 EVNT.49263189._000930.pool.root.1
[2026-04-11 09:28:29] -rw-r--r-- 2 m m     15665 Apr 11 06:39 start_atlas.sh
[2026-04-11 09:28:29] drwxrwx--x 2 m m      4096 Apr 11 06:39 shared
[2026-04-11 09:28:29] -rw-r--r-- 2 m m    656933 Apr 11 06:39 input.tar.gz
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m      5950 Apr 11 06:39 init_data.xml
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m         0 Apr 11 06:39 boinc_lockfile
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m      2574 Apr 11 06:39 pandaJob.out
[2026-04-11 09:28:29] -rw------- 1 m m    997844 Apr 11 06:40 agis_schedconf.cvmfs.json
[2026-04-11 09:28:29] -rw------- 1 m m   1511579 Apr 11 06:40 agis_ddmendpoints.agis.ALL.json
[2026-04-11 09:28:29] -rw------- 1 m m       416 Apr 11 06:40 workernode_map.json
[2026-04-11 09:28:29] drwx------ 5 m m      4096 Apr 11 06:40 pilot3
[2026-04-11 09:28:29] -rw------- 1 m m 193596592 Apr 11 09:27 HITS.49263191._043670.pool.root.1
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m       488 Apr 11 09:27 boinc_task_state.xml
[2026-04-11 09:28:29] -rw------- 1 m m      1031 Apr 11 09:27 memory_monitor_summary.json
[2026-04-11 09:28:29] -rw------- 1 m m    276839 Apr 11 09:27 log.49263191._043670.job.log.tgz.1
[2026-04-11 09:28:29] -rw------- 1 m m      6342 Apr 11 09:27 heartbeat_new.json
[2026-04-11 09:28:29] -rw------- 1 m m      6233 Apr 11 09:27 heartbeat.json
[2026-04-11 09:28:29] -rw------- 1 m m        95 Apr 11 09:28 pilot_heartbeat.json
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m        28 Apr 11 09:28 wrapper_checkpoint.txt
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m      8192 Apr 11 09:28 boinc_mmap_file
[2026-04-11 09:28:29] -rw------- 1 m m      4823 Apr 11 09:28 pilotlog.txt
[2026-04-11 09:28:29] -rw------- 1 m m    943637 Apr 11 09:28 log.49263191._043670.job.log.1
[2026-04-11 09:28:29] -rw------- 1 m m       357 Apr 11 09:28 output.list
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m       410 Apr 11 09:28 runtime_log
[2026-04-11 09:28:29] -rw------- 1 m m   1239040 Apr 11 09:28 result.tar.gz
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m      8511 Apr 11 09:28 runtime_log.err
[2026-04-11 09:28:29] -rw------- 1 m m       645 Apr 11 09:28 c9cb27cbeba4.diag
[2026-04-11 09:28:29] -rw-rw-r-- 1 m m     20880 Apr 11 09:28 stderr.txt
[2026-04-11 09:28:29] HITS file was successfully produced:
[2026-04-11 09:28:29] -rw------- 1 m m 193596592 Apr 11 09:27 shared/HITS.pool.root.1
[2026-04-11 09:28:29]  *** Contents of shared directory: ***
[2026-04-11 09:28:29] total 411636
[2026-04-11 09:28:29] -rw-r--r-- 2 m m 225990339 Apr 11 06:39 ATLAS.root_0
[2026-04-11 09:28:29] -rw-r--r-- 2 m m     15665 Apr 11 06:39 start_atlas.sh
[2026-04-11 09:28:29] -rw-r--r-- 2 m m    656933 Apr 11 06:39 input.tar.gz
[2026-04-11 09:28:29] -rw------- 1 m m 193596592 Apr 11 09:27 HITS.pool.root.1
[2026-04-11 09:28:29] -rw------- 1 m m   1239040 Apr 11 09:28 result.tar.gz
09:28:31 (18626): run_atlas exited; CPU time 38560.869409
09:28:31 (18626): called boinc_finish(0)

</stderr_txt>
]]>

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