Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:07 (1262004): wrapper (7.7.26015): starting
00:00:07 (1262004): wrapper: running run_atlas (--nthreads 12)
[2026-04-11 00:00:07] Arguments: --nthreads 12
[2026-04-11 00:00:07] Threads: 12
[2026-04-11 00:00:07] Checking for CVMFS
[2026-04-11 00:00:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 00:00:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 00:00:09] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 00:00:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 00:00:11] 2.13.3.0 10021 153484 205776 158330 0 250 33760739 39288832 9824 16776704 0 100099945 99.579 108031683 36164 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-11 00:00:11] CVMFS is ok
[2026-04-11 00:00:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 00:00:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 00:00:11] Further information can be found at the LHC@home message board.
[2026-04-11 00:00:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 00:00:11] Checking for apptainer binary...
[2026-04-11 00:00:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 00:00:11] Running /usr/bin/apptainer --version
[2026-04-11 00:00:11] apptainer version 1.4.5-2.el9
[2026-04-11 00:00:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 00:00:12] c-211-4.aglt2.org
[2026-04-11 00:00:12] apptainer works
[2026-04-11 00:00:12] Set ATHENA_PROC_NUMBER=12
[2026-04-11 00:00:12] Set ATHENA_CORE_NUMBER=12
[2026-04-11 00:00:13] Starting ATLAS job with PandaID=7086851632
[2026-04-11 00:00:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 12:16:07]  *** The last 200 lines of the pilot log: ***
[2026-04-11 12:16:07] 2026-04-11 16:15:23,941 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-11 12:16:07] 2026-04-11 16:15:24,492 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-11 12:16:07] 2026-04-11 16:15:26,040 | INFO     | job 7086851632 has state=finished
[2026-04-11 12:16:07] 2026-04-11 16:15:26,040 | INFO     | preparing for final server update for job 7086851632 in state='finished'
[2026-04-11 12:16:07] 2026-04-11 16:15:26,040 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7086851632/jobReport.json
[2026-04-11 12:16:07] 2026-04-11 16:15:26,043 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-04-11 12:16:07] 2026-04-11 16:15:26,081 | INFO     | this job has now completed (state=finished)
[2026-04-11 12:16:07] 2026-04-11 16:15:26,081 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 12:16:07] 2026-04-11 16:15:26,082 | INFO     | log transfer has been attempted: DONE
[2026-04-11 12:16:07] 2026-04-11 16:15:26,082 | INFO     | job 7086851632 has finished - writing final server update
[2026-04-11 12:16:07] 2026-04-11 16:15:26,082 | INFO     | total number of processed events: 400 (read)
[2026-04-11 12:16:07] 2026-04-11 16:15:26,158 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7086851632/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 12:16:07] 2026-04-11 16:15:26,171 | INFO     | extracted standard info from prmon json
[2026-04-11 12:16:07] 2026-04-11 16:15:26,172 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 12:16:07] 2026-04-11 16:15:26,189 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 12:16:07] 2026-04-11 16:15:26,194 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 12:16:07] 2026-04-11 16:15:26,270 | INFO     | fitting pss+swap vs Time
[2026-04-11 12:16:07] 2026-04-11 16:15:26,288 | INFO     | sum of square deviations: 114776353392.9361
[2026-04-11 12:16:07] 2026-04-11 16:15:26,435 | INFO     | sum of deviations: 1097696082068.2498
[2026-04-11 12:16:07] 2026-04-11 16:15:26,435 | INFO     | mean x (centered): 0.0
[2026-04-11 12:16:07] 2026-04-11 16:15:26,435 | INFO     | mean y: 2589158.175487465
[2026-04-11 12:16:07] 2026-04-11 16:15:26,435 | INFO     | intersect: 2589158.175487465
[2026-04-11 12:16:07] 2026-04-11 16:15:26,437 | INFO     | chi2: 13.02453185899515
[2026-04-11 12:16:07] 2026-04-11 16:15:26,475 | INFO     | monitor loop #2437: job 0:7086851632 is in state 'finished'
[2026-04-11 12:16:07] 2026-04-11 16:15:26,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-04-11 12:16:07] 2026-04-11 16:15:26,479 | INFO     | sum of square deviations: 112395349258.36444
[2026-04-11 12:16:07] 2026-04-11 16:15:26,623 | INFO     | sum of deviations: 1292080515667.0767
[2026-04-11 12:16:07] 2026-04-11 16:15:26,623 | INFO     | mean x (centered): 0.0
[2026-04-11 12:16:07] 2026-04-11 16:15:26,623 | INFO     | mean y: 2601587.7545582047
[2026-04-11 12:16:07] 2026-04-11 16:15:26,624 | INFO     | intersect: 2601587.7545582047
[2026-04-11 12:16:07] 2026-04-11 16:15:26,625 | INFO     | chi2: 9.940511103936828
[2026-04-11 12:16:07] 2026-04-11 16:15:26,625 | INFO     | current chi2=9.940511103936828 (change=23.678553582165033 %)
[2026-04-11 12:16:07] 2026-04-11 16:15:26,625 | INFO     | right removable region: 712
[2026-04-11 12:16:07] 2026-04-11 16:15:26,674 | INFO     | sum of square deviations: 112394929946.9173
[2026-04-11 12:16:07] 2026-04-11 16:15:26,830 | INFO     | sum of deviations: 848770000009.0338
[2026-04-11 12:16:07] 2026-04-11 16:15:26,830 | INFO     | mean x (centered): 0.0
[2026-04-11 12:16:07] 2026-04-11 16:15:26,830 | INFO     | mean y: 2605092.7952314164
[2026-04-11 12:16:07] 2026-04-11 16:15:26,830 | INFO     | intersect: 2605092.7952314164
[2026-04-11 12:16:07] 2026-04-11 16:15:26,863 | INFO     | chi2: 8.978176413868658
[2026-04-11 12:16:07] 2026-04-11 16:15:26,863 | INFO     | current chi2=8.978176413868658 (change=31.06718528491258 %)
[2026-04-11 12:16:07] 2026-04-11 16:15:26,864 | INFO     | sum of square deviations: 110046670279.30357
[2026-04-11 12:16:07] 2026-04-11 16:15:26,987 | INFO     | sum of deviations: 665166016843.5785
[2026-04-11 12:16:07] 2026-04-11 16:15:26,987 | INFO     | mean x (centered): 0.0
[2026-04-11 12:16:07] 2026-04-11 16:15:26,988 | INFO     | mean y: 2617014.2810734464
[2026-04-11 12:16:07] 2026-04-11 16:15:26,988 | INFO     | intersect: 2617014.2810734464
[2026-04-11 12:16:07] 2026-04-11 16:15:26,989 | INFO     | chi2: 6.924244818020465
[2026-04-11 12:16:07] 2026-04-11 16:15:26,989 | INFO     | current chi2=6.924244818020465 (change=22.876935149942796 %)
[2026-04-11 12:16:07] 2026-04-11 16:15:26,989 | INFO     | left removable region: 10
[2026-04-11 12:16:07] 2026-04-11 16:15:27,013 | INFO     | sum of square deviations: 107272650952.21808
[2026-04-11 12:16:07] 2026-04-11 16:15:27,157 | INFO     | sum of deviations: 858082689544.2047
[2026-04-11 12:16:07] 2026-04-11 16:15:27,157 | INFO     | mean x (centered): 0.0
[2026-04-11 12:16:07] 2026-04-11 16:15:27,158 | INFO     | mean y: 2629701.05982906
[2026-04-11 12:16:07] 2026-04-11 16:15:27,158 | INFO     | intersect: 2629701.05982906
[2026-04-11 12:16:07] 2026-04-11 16:15:27,208 | INFO     | chi2: 3.774595317426278
[2026-04-11 12:16:07] 2026-04-11 16:15:27,208 | INFO     | current memory leak: 8.00 B/s (using 702 data points, chi2=3.77)
[2026-04-11 12:16:07] 2026-04-11 16:15:27,209 | INFO     | could have reported an average CPU frequency of 2599 MHz (28 samples)
[2026-04-11 12:16:07] 2026-04-11 16:15:27,209 | INFO     | ..............................
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | . Timing measurements:
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | . get job = 1 s
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | . initial setup = 64 s
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | . payload setup = 88 s
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | . stage-in = 1 s
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | . payload execution = 43794 s
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | . stage-out = 12 s
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | . log creation = 2 s
[2026-04-11 12:16:07] 2026-04-11 16:15:27,210 | INFO     | ..............................
[2026-04-11 12:16:07] 2026-04-11 16:15:27,780 | INFO     | 
[2026-04-11 12:16:07] 2026-04-11 16:15:27,780 | INFO     | job summary report
[2026-04-11 12:16:07] 2026-04-11 16:15:27,780 | INFO     | --------------------------------------------------
[2026-04-11 12:16:07] 2026-04-11 16:15:27,780 | INFO     | PanDA job id: 7086851632
[2026-04-11 12:16:07] 2026-04-11 16:15:27,780 | INFO     | task id: 49263208
[2026-04-11 12:16:07] 2026-04-11 16:15:27,780 | INFO     | errors: (none)
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | pilot state: finished 
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | transexitcode: 0
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | exeerrorcode: 0
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | exeerrordiag: 
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | exitcode: 0
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | exitmsg: OK
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | cpuconsumptiontime: 54857 s
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | nevents: 400
[2026-04-11 12:16:07] 2026-04-11 16:15:27,781 | INFO     | neventsw: 0
[2026-04-11 12:16:07] 2026-04-11 16:15:27,782 | INFO     | pid: 1274504
[2026-04-11 12:16:07] 2026-04-11 16:15:27,782 | INFO     | pgrp: 1274504
[2026-04-11 12:16:07] 2026-04-11 16:15:27,782 | INFO     | corecount: 12
[2026-04-11 12:16:07] 2026-04-11 16:15:27,782 | INFO     | event service: False
[2026-04-11 12:16:07] 2026-04-11 16:15:27,782 | INFO     | sizes: {0: 2279010, 1: 2279611, 2: 2279695, 4: 2279751, 5: 2279751, 6: 2280006, 8: 2280006, 9: 2281736, 20: 2281764, 43889: 2326202, 43890: 2326201, 43905: 2335535
[2026-04-11 12:16:07] 2026-04-11 16:15:27,782 | INFO     | --------------------------------------------------
[2026-04-11 12:16:07] 2026-04-11 16:15:27,782 | INFO     | 
[2026-04-11 12:16:07] 2026-04-11 16:15:27,782 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-04-11 12:16:07] 2026-04-11 16:15:28,034 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,034 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,034 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,035 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,036 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 12:16:07] 2026-04-11 16:15:28,037 | INFO     | job 7086851632 has completed (purged errors)
[2026-04-11 12:16:07] 2026-04-11 16:15:28,037 | INFO     | overall cleanup function is called
[2026-04-11 12:16:07] 2026-04-11 16:15:29,097 | INFO     | --- collectZombieJob: --- 10, [1274504]
[2026-04-11 12:16:07] 2026-04-11 16:15:29,097 | INFO     | zombie collector waiting for pid 1274504
[2026-04-11 12:16:07] 2026-04-11 16:15:29,097 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 12:16:07] 2026-04-11 16:15:29,097 | INFO     | collected zombie processes
[2026-04-11 12:16:07] 2026-04-11 16:15:29,097 | INFO     | will attempt to kill all subprocesses of pid=1274504
[2026-04-11 12:16:07] 2026-04-11 16:15:31,565 | INFO     | process IDs to be killed: [1274504] (in reverse order)
[2026-04-11 12:16:07] 2026-04-11 16:15:32,392 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 12:16:07] 2026-04-11 16:15:32,393 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 12:16:07] 2026-04-11 16:15:32,416 | INFO     | did not find any defunct processes belonging to 1274504
[2026-04-11 12:16:07] 2026-04-11 16:15:32,423 | INFO     | did not find any defunct processes belonging to 1274504
[2026-04-11 12:16:07] 2026-04-11 16:15:32,423 | INFO     | Ready for new job
[2026-04-11 12:16:07] 2026-04-11 16:15:32,426 | INFO     | **************************************
[2026-04-11 12:16:07] 2026-04-11 16:15:32,426 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 12:16:07] 2026-04-11 16:15:32,426 | INFO     | **************************************
[2026-04-11 12:16:07] 2026-04-11 16:15:32,427 | INFO     | 
[2026-04-11 12:16:07] 2026-04-11 16:15:32,429 | INFO     | architecture information:
[2026-04-11 12:16:07] 2026-04-11 16:15:32,430 | INFO     | executing command: cat /etc/os-release
[2026-04-11 12:16:07] 2026-04-11 16:15:32,453 | INFO     | cat /etc/os-release:
[2026-04-11 12:16:07] NAME="CentOS Linux"
[2026-04-11 12:16:07] VERSION="7 (Core)"
[2026-04-11 12:16:07] ID="centos"
[2026-04-11 12:16:07] ID_LIKE="rhel fedora"
[2026-04-11 12:16:07] VERSION_ID="7"
[2026-04-11 12:16:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 12:16:07] ANSI_COLOR="0;31"
[2026-04-11 12:16:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 12:16:07] HOME_URL="https://www.centos.org/"
[2026-04-11 12:16:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 12:16:07] 
[2026-04-11 12:16:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 12:16:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 12:16:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 12:16:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 12:16:07] 
[2026-04-11 12:16:07] 2026-04-11 16:15:32,453 | INFO     | **************************************
[2026-04-11 12:16:07] 2026-04-11 16:15:32,957 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-04-11 12:16:07] 2026-04-11 16:15:33,077 | INFO     | sufficient remaining disk space (52977205248 B)
[2026-04-11 12:16:07] 2026-04-11 16:15:33,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 12:16:07] 2026-04-11 16:15:33,078 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 12:16:07] 2026-04-11 16:15:33,078 | INFO     | update_server=False
[2026-04-11 12:16:07] 2026-04-11 16:15:33,078 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 12:16:07] 2026-04-11 16:15:33,097 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 12:16:07] 2026-04-11 16:15:33,097 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 12:16:07] 2026-04-11 16:15:33,097 | INFO     | aborting loop
[2026-04-11 12:16:07] 2026-04-11 16:15:33,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 12:16:07] 2026-04-11 16:15:33,501 | INFO     | all data control threads have been joined
[2026-04-11 12:16:07] 2026-04-11 16:15:34,083 | INFO     | [job] retrieve thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:34,097 | INFO     | all payload control threads have been joined
[2026-04-11 12:16:07] 2026-04-11 16:15:34,103 | INFO     | [job] queue monitor thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:34,109 | INFO     | [job] job monitor thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:34,110 | INFO     | all job control threads have been joined
[2026-04-11 12:16:07] 2026-04-11 16:15:34,168 | INFO     | [payload] validate_post thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:34,183 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:34,329 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:34,452 | INFO     | [job] validate thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:34,507 | INFO     | [data] control thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:34,856 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:35,103 | INFO     | [payload] control thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:35,115 | INFO     | [job] control thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:35,329 | INFO     | [data] copytool_out thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:35,394 | INFO     | [payload] failed_post thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:35,424 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:35,571 | INFO     | [data] copytool_in thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:35,888 | INFO     | [monitor] cgroup control has ended
[2026-04-11 12:16:07] 2026-04-11 16:15:35,963 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 12:16:07] 2026-04-11 16:15:39,974 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 12:16:07] 2026-04-11 16:15:41,984 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140306775766848)>', '<ExcThread(monitor, started 140306414548736)>']
[2026-04-11 12:16:07] 2026-04-11 16:15:47,012 | INFO     | all workflow threads have been joined
[2026-04-11 12:16:07] 2026-04-11 16:15:47,013 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 12:16:07] 2026-04-11 16:15:47,013 | INFO     | traces error code: 0
[2026-04-11 12:16:07] 2026-04-11 16:15:47,013 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 12:16:07] 2026-04-11 16:16:04,204 | INFO     | PID=1268319 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 12:16:07] 2026-04-11 16:16:04,205 | INFO     | .. there are 7 such processes running
[2026-04-11 12:16:07] 2026-04-11 16:16:04,205 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 12:16:07] 2026-04-11 16:16:04,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 12:16:07] 2026-04-11 16:16:04,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 12:16:07] 2026-04-11 16:16:04,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 12:16:07] 2026-04-11 16:16:04,205 | INFO     | [monitor] control thread has ended
[2026-04-11 12:16:07] 2026-04-11 16:16:05,286 [wrapper] ==== pilot stdout END ====
[2026-04-11 12:16:07] 2026-04-11 16:16:05,310 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 12:16:07] 2026-04-11 16:16:05,349 [wrapper] pilotpid: 1268319
[2026-04-11 12:16:07] 2026-04-11 16:16:05,382 [wrapper] Pilot exit status: 0
[2026-04-11 12:16:07] 2026-04-11 16:16:05,520 [wrapper] pandaids: 7086851632
[2026-04-11 12:16:07] 2026-04-11 16:16:06,223 [wrapper] cleanup supervisor_pilot 2286453 1268320
[2026-04-11 12:16:07] 2026-04-11 16:16:06,279 [wrapper] Test setup, not cleaning
[2026-04-11 12:16:07] 2026-04-11 16:16:06,329 [wrapper] apfmon messages muted
[2026-04-11 12:16:07] 2026-04-11 16:16:06,392 [wrapper] ==== wrapper stdout END ====
[2026-04-11 12:16:07] 2026-04-11 16:16:06,466 [wrapper] ==== wrapper stderr END ====
[2026-04-11 12:16:07]  *** Error codes and diagnostics ***
[2026-04-11 12:16:07]     "exeErrorCode": 0,
[2026-04-11 12:16:07]     "pilotErrorCode": 0,
[2026-04-11 12:16:07]  *** Listing of results directory ***
[2026-04-11 12:16:07] total 429072
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas      5094 Apr 10 21:27 queuedata.json
[2026-04-11 12:16:07] -rwx------. 1 boincer umatlas     36322 Apr 10 21:28 runpilot2-wrapper.sh
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas    644190 Apr 10 21:29 pilot3.tar.gz
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas       100 Apr 11 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 12:16:07] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 11 00:00 run_atlas
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas       105 Apr 11 00:00 job.xml
[2026-04-11 12:16:07] -rw-r--r--. 2 boincer umatlas 226625785 Apr 11 00:00 EVNT.49263206._000770.pool.root.1
[2026-04-11 12:16:07] -rw-r--r--. 2 boincer umatlas     15665 Apr 11 00:00 start_atlas.sh
[2026-04-11 12:16:07] drwxrwx--x. 2 boincer umatlas      4096 Apr 11 00:00 shared
[2026-04-11 12:16:07] -rw-r--r--. 2 boincer umatlas    656928 Apr 11 00:00 input.tar.gz
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas         0 Apr 11 00:00 boinc_lockfile
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas      2575 Apr 11 00:00 pandaJob.out
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas        57 Apr 11 00:00 setup.sh.local
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas       441 Apr 11 00:03 workernode_map.json
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas    997860 Apr 11 00:03 agis_schedconf.cvmfs.json
[2026-04-11 12:16:07] drwx------. 5 boincer umatlas      4096 Apr 11 00:03 pilot3
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas 200585898 Apr 11 12:10 HITS.49263208._033211.pool.root.1
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas      6576 Apr 11 12:10 init_data.xml
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas       489 Apr 11 12:10 boinc_task_state.xml
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas      1041 Apr 11 12:15 memory_monitor_summary.json
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas        95 Apr 11 12:15 pilot_heartbeat.json
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas   1511579 Apr 11 12:15 agis_ddmendpoints.agis.ALL.json
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas    688606 Apr 11 12:15 log.49263208._033211.job.log.tgz.1
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas      6414 Apr 11 12:15 heartbeat_new.json
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas      6305 Apr 11 12:15 heartbeat.json
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas      8192 Apr 11 12:15 boinc_mmap_file
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas        28 Apr 11 12:15 wrapper_checkpoint.txt
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas       822 Apr 11 12:16 pilotlog.txt
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas   3361494 Apr 11 12:16 log.49263208._033211.job.log.1
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas       357 Apr 11 12:16 output.list
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas       410 Apr 11 12:16 runtime_log
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas   4065280 Apr 11 12:16 result.tar.gz
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas      8961 Apr 11 12:16 runtime_log.err
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas       657 Apr 11 12:16 a3ae6807801a.diag
[2026-04-11 12:16:07] -rw-r--r--. 1 boincer umatlas     21339 Apr 11 12:16 stderr.txt
[2026-04-11 12:16:07] HITS file was successfully produced:
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas 200585898 Apr 11 12:10 shared/HITS.pool.root.1
[2026-04-11 12:16:07]  *** Contents of shared directory: ***
[2026-04-11 12:16:07] total 421840
[2026-04-11 12:16:07] -rw-r--r--. 2 boincer umatlas 226625785 Apr 11 00:00 ATLAS.root_0
[2026-04-11 12:16:07] -rw-r--r--. 2 boincer umatlas     15665 Apr 11 00:00 start_atlas.sh
[2026-04-11 12:16:07] -rw-r--r--. 2 boincer umatlas    656928 Apr 11 00:00 input.tar.gz
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas 200585898 Apr 11 12:10 HITS.pool.root.1
[2026-04-11 12:16:07] -rw-------. 1 boincer umatlas   4065280 Apr 11 12:16 result.tar.gz
12:16:09 (1262004): run_atlas exited; CPU time 55864.088213
12:16:09 (1262004): called boinc_finish(0)

</stderr_txt>
]]>

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