Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:28:24 (1524097): wrapper (7.7.26015): starting
16:28:24 (1524097): wrapper: running run_atlas (--nthreads 3)
[2026-04-11 16:28:24] Arguments: --nthreads 3
[2026-04-11 16:28:24] Threads: 3
[2026-04-11 16:28:24] Checking for CVMFS
[2026-04-11 16:28:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 16:28:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 16:28:25] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 16:28:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 16:28:25] 2.9.2.0 1148888 2374 78444 158347 3 49 32994753 36864000 0 130560 0 1431815 99.988 96258 14048 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 16:28:25] CVMFS is ok
[2026-04-11 16:28:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 16:28:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 16:28:25] Further information can be found at the LHC@home message board.
[2026-04-11 16:28:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 16:28:25] Checking for apptainer binary...
[2026-04-11 16:28:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 16:28:25] Running /usr/bin/apptainer --version
[2026-04-11 16:28:25] apptainer version 1.4.1-1.1
[2026-04-11 16:28:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 16:28:25] belleA253
[2026-04-11 16:28:25] apptainer works
[2026-04-11 16:28:25] Set ATHENA_PROC_NUMBER=3
[2026-04-11 16:28:25] Set ATHENA_CORE_NUMBER=3
[2026-04-11 16:28:25] Starting ATLAS job with PandaID=7086868207
[2026-04-11 16:28:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 17:52:52]  *** The last 200 lines of the pilot log: ***
[2026-04-11 17:52:52] 2026-04-11 15:52:20,794 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 17:52:52] 2026-04-11 15:52:20,794 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 17:52:52] 2026-04-11 15:52:20,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 17:52:52] 2026-04-11 15:52:20,794 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 17:52:52] 2026-04-11 15:52:20,794 | INFO     | job 7086868207 has completed (purged errors)
[2026-04-11 17:52:52] 2026-04-11 15:52:20,794 | INFO     | overall cleanup function is called
[2026-04-11 17:52:52] 2026-04-11 15:52:21,801 | INFO     | --- collectZombieJob: --- 10, [1532568]
[2026-04-11 17:52:52] 2026-04-11 15:52:21,801 | INFO     | zombie collector waiting for pid 1532568
[2026-04-11 17:52:52] 2026-04-11 15:52:21,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 17:52:52] 2026-04-11 15:52:21,801 | INFO     | collected zombie processes
[2026-04-11 17:52:52] 2026-04-11 15:52:21,801 | INFO     | will attempt to kill all subprocesses of pid=1532568
[2026-04-11 17:52:52] 2026-04-11 15:52:21,841 | INFO     | process IDs to be killed: [1532568] (in reverse order)
[2026-04-11 17:52:52] 2026-04-11 15:52:21,867 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 17:52:52] 2026-04-11 15:52:21,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 17:52:52] 2026-04-11 15:52:21,868 | INFO     | did not find any defunct processes belonging to 1532568
[2026-04-11 17:52:52] 2026-04-11 15:52:21,869 | INFO     | did not find any defunct processes belonging to 1532568
[2026-04-11 17:52:52] 2026-04-11 15:52:21,869 | INFO     | Ready for new job
[2026-04-11 17:52:52] 2026-04-11 15:52:21,870 | INFO     | **************************************
[2026-04-11 17:52:52] 2026-04-11 15:52:21,870 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 17:52:52] 2026-04-11 15:52:21,870 | INFO     | **************************************
[2026-04-11 17:52:52] 2026-04-11 15:52:21,870 | INFO     | 
[2026-04-11 17:52:52] 2026-04-11 15:52:21,870 | INFO     | architecture information:
[2026-04-11 17:52:52] 2026-04-11 15:52:21,870 | INFO     | executing command: cat /etc/os-release
[2026-04-11 17:52:52] 2026-04-11 15:52:21,880 | INFO     | cat /etc/os-release:
[2026-04-11 17:52:52] NAME="CentOS Linux"
[2026-04-11 17:52:52] VERSION="7 (Core)"
[2026-04-11 17:52:52] ID="centos"
[2026-04-11 17:52:52] ID_LIKE="rhel fedora"
[2026-04-11 17:52:52] VERSION_ID="7"
[2026-04-11 17:52:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 17:52:52] ANSI_COLOR="0;31"
[2026-04-11 17:52:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 17:52:52] HOME_URL="https://www.centos.org/"
[2026-04-11 17:52:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 17:52:52] 
[2026-04-11 17:52:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 17:52:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 17:52:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 17:52:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 17:52:52] 
[2026-04-11 17:52:52] 2026-04-11 15:52:21,880 | INFO     | **************************************
[2026-04-11 17:52:52] 2026-04-11 15:52:22,383 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 17:52:52] 2026-04-11 15:52:22,397 | INFO     | sufficient remaining disk space (371560808448 B)
[2026-04-11 17:52:52] 2026-04-11 15:52:22,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 17:52:52] 2026-04-11 15:52:22,397 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 17:52:52] 2026-04-11 15:52:22,397 | INFO     | update_server=False
[2026-04-11 17:52:52] 2026-04-11 15:52:22,397 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 17:52:52] 2026-04-11 15:52:22,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 17:52:52] 2026-04-11 15:52:22,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 17:52:52] 2026-04-11 15:52:22,410 | INFO     | aborting loop
[2026-04-11 17:52:52] 2026-04-11 15:52:22,855 | INFO     | job.realtimelogging is not enabled
[2026-04-11 17:52:52] 2026-04-11 15:52:22,964 | INFO     | all data control threads have been joined
[2026-04-11 17:52:52] 2026-04-11 15:52:23,399 | INFO     | all payload control threads have been joined
[2026-04-11 17:52:52] 2026-04-11 15:52:23,399 | INFO     | [job] retrieve thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,403 | INFO     | [job] queue monitor thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,416 | INFO     | [job] job monitor thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,435 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,451 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,506 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,574 | INFO     | [data] copytool_in thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,828 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 17:52:52] 2026-04-11 15:52:23,834 | INFO     | [payload] validate_post thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,861 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,959 | INFO     | [payload] failed_post thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:23,970 | INFO     | [data] control thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:24,087 | INFO     | all job control threads have been joined
[2026-04-11 17:52:52] 2026-04-11 15:52:24,405 | INFO     | [payload] control thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:24,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 17:52:52] 2026-04-11 15:52:24,877 | INFO     | [job] validate thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:25,093 | INFO     | [job] control thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:25,834 | INFO     | [data] copytool_out thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:28,843 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 17:52:52] 2026-04-11 15:52:41,404 | INFO     | [monitor] cgroup control has ended
[2026-04-11 17:52:52] 2026-04-11 15:52:42,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403924387648)>', '<ExcThread(monitor, started 140403571398400)>']
[2026-04-11 17:52:52] 2026-04-11 15:52:47,781 | INFO     | all workflow threads have been joined
[2026-04-11 17:52:52] 2026-04-11 15:52:47,781 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 17:52:52] 2026-04-11 15:52:47,781 | INFO     | traces error code: 0
[2026-04-11 17:52:52] 2026-04-11 15:52:47,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 17:52:52] 2026-04-11 15:52:51,953 | INFO     | PID=1528137 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 17:52:52] 2026-04-11 15:52:51,954 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 17:52:52] 2026-04-11 15:52:51,954 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 17:52:52] 2026-04-11 15:52:51,954 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 17:52:52] 2026-04-11 15:52:51,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 17:52:52] 2026-04-11 15:52:51,954 | INFO     | [monitor] control thread has ended
[2026-04-11 17:52:52] 2026-04-11 15:52:52,000 [wrapper] ==== pilot stdout END ====
[2026-04-11 17:52:52] 2026-04-11 15:52:52,003 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 17:52:52] 2026-04-11 15:52:52,005 [wrapper] pilotpid: 1528137
[2026-04-11 17:52:52] 2026-04-11 15:52:52,008 [wrapper] Pilot exit status: 0
[2026-04-11 17:52:52] 2026-04-11 15:52:52,016 [wrapper] pandaids: 7086868207
[2026-04-11 17:52:52] 2026-04-11 15:52:52,032 [wrapper] cleanup supervisor_pilot 1537675 1528138
[2026-04-11 17:52:52] 2026-04-11 15:52:52,035 [wrapper] Test setup, not cleaning
[2026-04-11 17:52:52] 2026-04-11 15:52:52,037 [wrapper] apfmon messages muted
[2026-04-11 17:52:52] 2026-04-11 15:52:52,040 [wrapper] ==== wrapper stdout END ====
[2026-04-11 17:52:52] 2026-04-11 15:52:52,043 [wrapper] ==== wrapper stderr END ====
[2026-04-11 17:52:52]  *** Error codes and diagnostics ***
[2026-04-11 17:52:52]     "exeErrorCode": 0,
[2026-04-11 17:52:52]     "pilotErrorCode": 0,
[2026-04-11 17:52:52]  *** Listing of results directory ***
[2026-04-11 17:52:52] total 411376
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc    644190 Apr 11 04:24 pilot3.tar.gz
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc      5094 Apr 11 04:26 queuedata.json
[2026-04-11 17:52:52] -rwx------ 1 boinc boinc     36322 Apr 11 04:27 runpilot2-wrapper.sh
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc       100 Apr 11 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 17:52:52] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 16:28 run_atlas
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc       105 Apr 11 16:28 job.xml
[2026-04-11 17:52:52] -rw-r--r-- 2 boinc boinc 222226799 Apr 11 16:28 EVNT.49263206._000793.pool.root.1
[2026-04-11 17:52:52] -rw-r--r-- 2 boinc boinc    656927 Apr 11 16:28 input.tar.gz
[2026-04-11 17:52:52] -rw-r--r-- 2 boinc boinc     15665 Apr 11 16:28 start_atlas.sh
[2026-04-11 17:52:52] drwxrwx--x 2 boinc boinc      4096 Apr 11 16:28 shared
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc         0 Apr 11 16:28 boinc_setup_complete
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc      6363 Apr 11 16:28 init_data.xml
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc         0 Apr 11 16:28 boinc_lockfile
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc      2575 Apr 11 16:28 pandaJob.out
[2026-04-11 17:52:52] -rw------- 1 boinc boinc    997820 Apr 11 16:28 agis_schedconf.cvmfs.json
[2026-04-11 17:52:52] -rw------- 1 boinc boinc   1511579 Apr 11 16:28 agis_ddmendpoints.agis.ALL.json
[2026-04-11 17:52:52] -rw------- 1 boinc boinc       426 Apr 11 16:28 workernode_map.json
[2026-04-11 17:52:52] drwx------ 5 boinc boinc      4096 Apr 11 16:28 pilot3
[2026-04-11 17:52:52] -rw------- 1 boinc boinc        95 Apr 11 17:51 pilot_heartbeat.json
[2026-04-11 17:52:52] -rw------- 1 boinc boinc 193541123 Apr 11 17:52 HITS.49263208._033488.pool.root.1
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc       488 Apr 11 17:52 boinc_task_state.xml
[2026-04-11 17:52:52] -rw------- 1 boinc boinc      1016 Apr 11 17:52 memory_monitor_summary.json
[2026-04-11 17:52:52] -rw------- 1 boinc boinc    228258 Apr 11 17:52 log.49263208._033488.job.log.tgz.1
[2026-04-11 17:52:52] -rw------- 1 boinc boinc      6328 Apr 11 17:52 heartbeat_new.json
[2026-04-11 17:52:52] -rw------- 1 boinc boinc      6219 Apr 11 17:52 heartbeat.json
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc      8192 Apr 11 17:52 boinc_mmap_file
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc        27 Apr 11 17:52 wrapper_checkpoint.txt
[2026-04-11 17:52:52] -rw------- 1 boinc boinc       747 Apr 11 17:52 pilotlog.txt
[2026-04-11 17:52:52] -rw------- 1 boinc boinc    491107 Apr 11 17:52 log.49263208._033488.job.log.1
[2026-04-11 17:52:52] -rw------- 1 boinc boinc       357 Apr 11 17:52 output.list
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc       410 Apr 11 17:52 runtime_log
[2026-04-11 17:52:52] -rw------- 1 boinc boinc    737280 Apr 11 17:52 result.tar.gz
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc      8533 Apr 11 17:52 runtime_log.err
[2026-04-11 17:52:52] -rw------- 1 boinc boinc       660 Apr 11 17:52 b179925c5578.diag
[2026-04-11 17:52:52] -rw-r--r-- 1 boinc boinc     11089 Apr 11 17:52 stderr.txt
[2026-04-11 17:52:52] HITS file was successfully produced:
[2026-04-11 17:52:52] -rw------- 1 boinc boinc 193541123 Apr 11 17:52 shared/HITS.pool.root.1
[2026-04-11 17:52:52]  *** Contents of shared directory: ***
[2026-04-11 17:52:52] total 407416
[2026-04-11 17:52:52] -rw-r--r-- 2 boinc boinc 222226799 Apr 11 16:28 ATLAS.root_0
[2026-04-11 17:52:52] -rw-r--r-- 2 boinc boinc    656927 Apr 11 16:28 input.tar.gz
[2026-04-11 17:52:52] -rw-r--r-- 2 boinc boinc     15665 Apr 11 16:28 start_atlas.sh
[2026-04-11 17:52:52] -rw------- 1 boinc boinc 193541123 Apr 11 17:52 HITS.pool.root.1
[2026-04-11 17:52:52] -rw------- 1 boinc boinc    737280 Apr 11 17:52 result.tar.gz
17:52:53 (1524097): run_atlas exited; CPU time 14133.521196
17:52:53 (1524097): called boinc_finish(0)

</stderr_txt>
]]>

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