Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:40:58 (4175): wrapper (7.7.26015): starting
02:40:58 (4175): wrapper: running run_atlas (--nthreads 4)
[2026-04-11 02:40:58] Arguments: --nthreads 4
[2026-04-11 02:40:58] Threads: 4
[2026-04-11 02:40:58] Checking for CVMFS
[2026-04-11 02:41:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 02:41:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 02:41:02] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 02:41:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 02:41:02] 2.11.5.0 4383 0 23860 158326 3 1 3057610 4096001 0 130560 0 0 0.000 1337 3073 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2026-04-11 02:41:02] CVMFS is ok
[2026-04-11 02:41:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 02:41:02] Checking for apptainer binary...
[2026-04-11 02:41:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 02:41:02] Running /usr/bin/apptainer --version
[2026-04-11 02:41:03] apptainer version 1.0.3
[2026-04-11 02:41:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 02:41:04] TeeC28
[2026-04-11 02:41:04] apptainer works
[2026-04-11 02:41:04] Set ATHENA_PROC_NUMBER=4
[2026-04-11 02:41:04] Set ATHENA_CORE_NUMBER=4
[2026-04-11 02:41:04] Starting ATLAS job with PandaID=7085607465
[2026-04-11 02:41:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/users/jmp/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 05:22:44]  *** The last 200 lines of the pilot log: ***
[2026-04-11 05:22:44] 2026-04-11 04:21:56,078 | INFO     | number of running child processes to parent process 12831: 1
[2026-04-11 05:22:44] 2026-04-11 04:21:56,078 | INFO     | maximum number of monitored processes: 6
[2026-04-11 05:22:44] 2026-04-11 04:21:56,236 | INFO     | job 7085607465 has state=finished
[2026-04-11 05:22:44] 2026-04-11 04:21:56,237 | INFO     | preparing for final server update for job 7085607465 in state='finished'
[2026-04-11 05:22:44] 2026-04-11 04:21:56,238 | INFO     | reading metadata from: /home/m/users/jmp/BOINC/slots/1/PanDA_Pilot-7085607465/jobReport.json
[2026-04-11 05:22:44] 2026-04-11 04:21:56,245 | INFO     | added worker_node to metadata from /home/m/users/jmp/BOINC/slots/1/workernode_map.json
[2026-04-11 05:22:44] 2026-04-11 04:21:56,246 | INFO     | this job has now completed (state=finished)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,247 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,247 | INFO     | log transfer has been attempted: DONE
[2026-04-11 05:22:44] 2026-04-11 04:21:56,247 | INFO     | job 7085607465 has finished - writing final server update
[2026-04-11 05:22:44] 2026-04-11 04:21:56,248 | INFO     | total number of processed events: 400 (read)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,272 | INFO     | using path: /home/m/users/jmp/BOINC/slots/1/PanDA_Pilot-7085607465/memory_monitor_summary.json (trf name=prmon)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,274 | INFO     | extracted standard info from prmon json
[2026-04-11 05:22:44] 2026-04-11 04:21:56,274 | INFO     | extracted standard memory fields from prmon json
[2026-04-11 05:22:44] 2026-04-11 04:21:56,275 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-11 05:22:44] 2026-04-11 04:21:56,275 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-11 05:22:44] 2026-04-11 04:21:56,288 | INFO     | fitting pss+swap vs Time
[2026-04-11 05:22:44] 2026-04-11 04:21:56,290 | INFO     | sum of square deviations: 1223016419.5
[2026-04-11 05:22:44] 2026-04-11 04:21:56,296 | INFO     | sum of deviations: -9222172546.500002
[2026-04-11 05:22:44] 2026-04-11 04:21:56,296 | INFO     | mean x (centered): 0.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,296 | INFO     | mean y: 2376524.4493670887
[2026-04-11 05:22:44] 2026-04-11 04:21:56,297 | INFO     | intersect: 2376524.4493670887
[2026-04-11 05:22:44] 2026-04-11 04:21:56,298 | INFO     | chi2: 1.6628202307826243
[2026-04-11 05:22:44] 2026-04-11 04:21:56,299 | INFO     | sum of square deviations: 1110539892.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,304 | INFO     | sum of deviations: -8832880702.999998
[2026-04-11 05:22:44] 2026-04-11 04:21:56,304 | INFO     | mean x (centered): 0.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,305 | INFO     | mean y: 2377052.4379084967
[2026-04-11 05:22:44] 2026-04-11 04:21:56,305 | INFO     | intersect: 2377052.4379084967
[2026-04-11 05:22:44] 2026-04-11 04:21:56,306 | INFO     | chi2: 1.660800433488133
[2026-04-11 05:22:44] 2026-04-11 04:21:56,306 | INFO     | current chi2=1.660800433488133 (change=0.12146816938477292 %)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,306 | INFO     | right removable region: 152
[2026-04-11 05:22:44] 2026-04-11 04:21:56,307 | INFO     | sum of square deviations: 1110539892.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,310 | INFO     | sum of deviations: -27395658821.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,310 | INFO     | mean x (centered): 0.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,310 | INFO     | mean y: 2400657.529411765
[2026-04-11 05:22:44] 2026-04-11 04:21:56,310 | INFO     | intersect: 2400657.529411765
[2026-04-11 05:22:44] 2026-04-11 04:21:56,311 | INFO     | chi2: 0.3007538769050893
[2026-04-11 05:22:44] 2026-04-11 04:21:56,311 | INFO     | current chi2=0.3007538769050893 (change=81.91302515224173 %)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,312 | INFO     | sum of square deviations: 1005179777.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,314 | INFO     | sum of deviations: -20218731271.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,314 | INFO     | mean x (centered): 0.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,314 | INFO     | mean y: 2390235.1621621624
[2026-04-11 05:22:44] 2026-04-11 04:21:56,315 | INFO     | intersect: 2390235.1621621624
[2026-04-11 05:22:44] 2026-04-11 04:21:56,315 | INFO     | chi2: 0.2651766259816946
[2026-04-11 05:22:44] 2026-04-11 04:21:56,315 | INFO     | current chi2=0.2651766259816946 (change=11.82935737670375 %)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,315 | INFO     | left removable region: 10
[2026-04-11 05:22:44] 2026-04-11 04:21:56,316 | INFO     | sum of square deviations: 887813855.5
[2026-04-11 05:22:44] 2026-04-11 04:21:56,318 | INFO     | sum of deviations: -19409335813.000004
[2026-04-11 05:22:44] 2026-04-11 04:21:56,318 | INFO     | mean x (centered): 0.0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,318 | INFO     | mean y: 2391497.915492958
[2026-04-11 05:22:44] 2026-04-11 04:21:56,318 | INFO     | intersect: 2391497.915492958
[2026-04-11 05:22:44] 2026-04-11 04:21:56,318 | INFO     | chi2: 0.2606742457019433
[2026-04-11 05:22:44] 2026-04-11 04:21:56,319 | INFO     | current memory leak: -21.86 B/s (using 142 data points, chi2=0.26)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,319 | INFO     | could have reported an average CPU frequency of 3110 MHz (9 samples)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,319 | INFO     | ..............................
[2026-04-11 05:22:44] 2026-04-11 04:21:56,319 | INFO     | . Timing measurements:
[2026-04-11 05:22:44] 2026-04-11 04:21:56,319 | INFO     | . get job = 0 s
[2026-04-11 05:22:44] 2026-04-11 04:21:56,319 | INFO     | . initial setup = 5 s
[2026-04-11 05:22:44] 2026-04-11 04:21:56,320 | INFO     | . payload setup = 7 s
[2026-04-11 05:22:44] 2026-04-11 04:21:56,320 | INFO     | . stage-in = 0 s
[2026-04-11 05:22:44] 2026-04-11 04:21:56,320 | INFO     | . payload execution = 9608 s
[2026-04-11 05:22:44] 2026-04-11 04:21:56,320 | INFO     | . stage-out = 0 s
[2026-04-11 05:22:44] 2026-04-11 04:21:56,320 | INFO     | . log creation = 0 s
[2026-04-11 05:22:44] 2026-04-11 04:21:56,320 | INFO     | ..............................
[2026-04-11 05:22:44] 2026-04-11 04:21:56,700 | INFO     | 
[2026-04-11 05:22:44] 2026-04-11 04:21:56,701 | INFO     | job summary report
[2026-04-11 05:22:44] 2026-04-11 04:21:56,701 | INFO     | --------------------------------------------------
[2026-04-11 05:22:44] 2026-04-11 04:21:56,701 | INFO     | PanDA job id: 7085607465
[2026-04-11 05:22:44] 2026-04-11 04:21:56,702 | INFO     | task id: 49263208
[2026-04-11 05:22:44] 2026-04-11 04:21:56,702 | INFO     | errors: (none)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,702 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-11 05:22:44] 2026-04-11 04:21:56,703 | INFO     | pilot state: finished 
[2026-04-11 05:22:44] 2026-04-11 04:21:56,703 | INFO     | transexitcode: 0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,703 | INFO     | exeerrorcode: 0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,703 | INFO     | exeerrordiag: 
[2026-04-11 05:22:44] 2026-04-11 04:21:56,704 | INFO     | exitcode: 0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,704 | INFO     | exitmsg: OK
[2026-04-11 05:22:44] 2026-04-11 04:21:56,704 | INFO     | cpuconsumptiontime: 36661 s
[2026-04-11 05:22:44] 2026-04-11 04:21:56,704 | INFO     | nevents: 400
[2026-04-11 05:22:44] 2026-04-11 04:21:56,705 | INFO     | neventsw: 0
[2026-04-11 05:22:44] 2026-04-11 04:21:56,705 | INFO     | pid: 12831
[2026-04-11 05:22:44] 2026-04-11 04:21:56,705 | INFO     | pgrp: 12831
[2026-04-11 05:22:44] 2026-04-11 04:21:56,705 | INFO     | corecount: 4
[2026-04-11 05:22:44] 2026-04-11 04:21:56,705 | INFO     | event service: False
[2026-04-11 05:22:44] 2026-04-11 04:21:56,705 | INFO     | sizes: {0: 2279004, 1: 2281499, 12: 2281499, 9619: 2318999, 9621: 2318999, 9622: 2319257}
[2026-04-11 05:22:44] 2026-04-11 04:21:56,705 | INFO     | --------------------------------------------------
[2026-04-11 05:22:44] 2026-04-11 04:21:56,705 | INFO     | 
[2026-04-11 05:22:44] 2026-04-11 04:21:56,706 | INFO     | executing command: ls -lF /home/m/users/jmp/BOINC/slots/1
[2026-04-11 05:22:44] 2026-04-11 04:21:56,717 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,718 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,719 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 05:22:44] 2026-04-11 04:21:56,720 | INFO     | job 7085607465 has completed (purged errors)
[2026-04-11 05:22:44] 2026-04-11 04:21:56,720 | INFO     | overall cleanup function is called
[2026-04-11 05:22:44] 2026-04-11 04:21:57,727 | INFO     | --- collectZombieJob: --- 10, [12831]
[2026-04-11 05:22:44] 2026-04-11 04:21:57,727 | INFO     | zombie collector waiting for pid 12831
[2026-04-11 05:22:44] 2026-04-11 04:21:57,728 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 05:22:44] 2026-04-11 04:21:57,728 | INFO     | collected zombie processes
[2026-04-11 05:22:44] 2026-04-11 04:21:57,728 | INFO     | will attempt to kill all subprocesses of pid=12831
[2026-04-11 05:22:44] 2026-04-11 04:21:57,799 | INFO     | process IDs to be killed: [12831] (in reverse order)
[2026-04-11 05:22:44] 2026-04-11 04:21:57,823 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 05:22:44] 2026-04-11 04:21:57,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 05:22:44] 2026-04-11 04:21:57,825 | INFO     | did not find any defunct processes belonging to 12831
[2026-04-11 05:22:44] 2026-04-11 04:21:57,827 | INFO     | did not find any defunct processes belonging to 12831
[2026-04-11 05:22:44] 2026-04-11 04:21:57,827 | INFO     | Ready for new job
[2026-04-11 05:22:44] 2026-04-11 04:21:57,828 | INFO     | **************************************
[2026-04-11 05:22:44] 2026-04-11 04:21:57,828 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 05:22:44] 2026-04-11 04:21:57,828 | INFO     | **************************************
[2026-04-11 05:22:44] 2026-04-11 04:21:57,828 | INFO     | 
[2026-04-11 05:22:44] 2026-04-11 04:21:57,849 | INFO     | architecture information:
[2026-04-11 05:22:44] 2026-04-11 04:21:57,850 | INFO     | executing command: cat /etc/os-release
[2026-04-11 05:22:44] 2026-04-11 04:21:57,857 | INFO     | cat /etc/os-release:
[2026-04-11 05:22:44] NAME="CentOS Linux"
[2026-04-11 05:22:44] VERSION="7 (Core)"
[2026-04-11 05:22:44] ID="centos"
[2026-04-11 05:22:44] ID_LIKE="rhel fedora"
[2026-04-11 05:22:44] VERSION_ID="7"
[2026-04-11 05:22:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 05:22:44] ANSI_COLOR="0;31"
[2026-04-11 05:22:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 05:22:44] HOME_URL="https://www.centos.org/"
[2026-04-11 05:22:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 05:22:44] 
[2026-04-11 05:22:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 05:22:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 05:22:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 05:22:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 05:22:44] 
[2026-04-11 05:22:44] 2026-04-11 04:21:57,857 | INFO     | **************************************
[2026-04-11 05:22:44] 2026-04-11 04:21:58,361 | INFO     | executing command: df -mP /home/m/users/jmp/BOINC/slots/1
[2026-04-11 05:22:44] 2026-04-11 04:21:58,372 | INFO     | sufficient remaining disk space (414151868416 B)
[2026-04-11 05:22:44] 2026-04-11 04:21:58,373 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 05:22:44] 2026-04-11 04:21:58,373 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 05:22:44] 2026-04-11 04:21:58,373 | INFO     | update_server=False
[2026-04-11 05:22:44] 2026-04-11 04:21:58,373 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 05:22:44] 2026-04-11 04:21:58,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 05:22:44] 2026-04-11 04:21:58,373 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 05:22:44] 2026-04-11 04:21:58,582 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-04-11 05:22:44] 2026-04-11 04:21:58,582 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-04-11 05:22:44] 2026-04-11 04:21:58,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 05:22:44] 2026-04-11 04:21:58,583 | INFO     | will abort loop
[2026-04-11 05:22:44] 2026-04-11 04:21:58,641 | INFO     | all job control threads have been joined
[2026-04-11 05:22:44] 2026-04-11 04:21:58,826 | INFO     | all data control threads have been joined
[2026-04-11 05:22:44] 2026-04-11 04:21:59,377 | INFO     | [job] queue monitor thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:21:59,379 | INFO     | [job] retrieve thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:21:59,440 | INFO     | all payload control threads have been joined
[2026-04-11 05:22:44] 2026-04-11 04:21:59,474 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:21:59,589 | INFO     | [job] job monitor thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:21:59,596 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 05:22:44] 2026-04-11 04:21:59,647 | INFO     | [job] control thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:21:59,774 | INFO     | [data] copytool_in thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:21:59,832 | INFO     | [data] control thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:00,004 | INFO     | [payload] failed_post thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:00,323 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:00,446 | INFO     | [payload] control thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:00,578 | INFO     | [job] validate thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:00,712 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:00,824 | INFO     | [payload] validate_post thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:01,602 | INFO     | [data] copytool_out thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:02,377 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:09,036 | INFO     | job.realtimelogging is not enabled
[2026-04-11 05:22:44] 2026-04-11 04:22:10,042 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 05:22:44] 2026-04-11 04:22:27,982 | INFO     | PID=8452 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-04-11 05:22:44] 2026-04-11 04:22:27,983 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 05:22:44] 2026-04-11 04:22:27,983 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 05:22:44] 2026-04-11 04:22:27,983 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 05:22:44] 2026-04-11 04:22:38,257 | INFO     | [monitor] cgroup control has ended
[2026-04-11 05:22:44] 2026-04-11 04:22:39,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898293679936)>', '<ExcThread(monitor, started 139897855784704)>']
[2026-04-11 05:22:44] 2026-04-11 04:22:40,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 05:22:44] 2026-04-11 04:22:40,043 | INFO     | [monitor] control thread has ended
[2026-04-11 05:22:44] 2026-04-11 04:22:44,271 | INFO     | all workflow threads have been joined
[2026-04-11 05:22:44] 2026-04-11 04:22:44,271 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 05:22:44] 2026-04-11 04:22:44,272 | INFO     | traces error code: 0
[2026-04-11 05:22:44] 2026-04-11 04:22:44,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 05:22:44] 2026-04-11 04:22:44,393 [wrapper] ==== pilot stdout END ====
[2026-04-11 05:22:44] 2026-04-11 04:22:44,396 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 05:22:44] 2026-04-11 04:22:44,399 [wrapper] pilotpid: 8452
[2026-04-11 05:22:44] 2026-04-11 04:22:44,401 [wrapper] Pilot exit status: 0
[2026-04-11 05:22:44] 2026-04-11 04:22:44,420 [wrapper] pandaids: 7085607465
[2026-04-11 05:22:44] 2026-04-11 04:22:44,441 [wrapper] cleanup supervisor_pilot 17787 8453
[2026-04-11 05:22:44] 2026-04-11 04:22:44,443 [wrapper] Test setup, not cleaning
[2026-04-11 05:22:44] 2026-04-11 04:22:44,445 [wrapper] apfmon messages muted
[2026-04-11 05:22:44] 2026-04-11 04:22:44,446 [wrapper] ==== wrapper stdout END ====
[2026-04-11 05:22:44] 2026-04-11 04:22:44,448 [wrapper] ==== wrapper stderr END ====
[2026-04-11 05:22:44]  *** Error codes and diagnostics ***
[2026-04-11 05:22:44]     "exeErrorCode": 0,
[2026-04-11 05:22:44]     "pilotErrorCode": 0,
[2026-04-11 05:22:44]  *** Listing of results directory ***
[2026-04-11 05:22:44] total 413812
[2026-04-11 05:22:44] -rw-r--r-- 1 m m    644190 Apr 11 00:45 pilot3.tar.gz
[2026-04-11 05:22:44] -rwx------ 1 m m     36322 Apr 11 01:33 runpilot2-wrapper.sh
[2026-04-11 05:22:44] -rw-r--r-- 1 m m      5094 Apr 11 01:34 queuedata.json
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m       100 Apr 11 02:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 05:22:44] -rwxr-xr-x 1 m m      7986 Apr 11 02:40 run_atlas
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m       105 Apr 11 02:40 job.xml
[2026-04-11 05:22:44] -rw-r--r-- 2 m m     15665 Apr 11 02:40 start_atlas.sh
[2026-04-11 05:22:44] drwxrwx--x 2 m m      4096 Apr 11 02:40 shared
[2026-04-11 05:22:44] -rw-r--r-- 2 m m    656928 Apr 11 02:40 input.tar.gz
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m      5950 Apr 11 02:40 init_data.xml
[2026-04-11 05:22:44] -rw-r--r-- 2 m m 223979863 Apr 11 02:40 EVNT.49263206._000136.pool.root.1
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m         0 Apr 11 02:40 boinc_lockfile
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m      2572 Apr 11 02:41 pandaJob.out
[2026-04-11 05:22:44] -rw------- 1 m m    997860 Apr 11 02:41 agis_schedconf.cvmfs.json
[2026-04-11 05:22:44] -rw------- 1 m m   1511579 Apr 11 02:41 agis_ddmendpoints.agis.ALL.json
[2026-04-11 05:22:44] -rw------- 1 m m       414 Apr 11 02:41 workernode_map.json
[2026-04-11 05:22:44] drwx------ 5 m m      4096 Apr 11 02:41 pilot3
[2026-04-11 05:22:44] -rw------- 1 m m 193339670 Apr 11 05:21 HITS.49263208._032490.pool.root.1
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m       487 Apr 11 05:21 boinc_task_state.xml
[2026-04-11 05:22:44] -rw------- 1 m m      1026 Apr 11 05:21 memory_monitor_summary.json
[2026-04-11 05:22:44] -rw------- 1 m m    272168 Apr 11 05:21 log.49263208._032490.job.log.tgz.1
[2026-04-11 05:22:44] -rw------- 1 m m      6340 Apr 11 05:21 heartbeat_new.json
[2026-04-11 05:22:44] -rw------- 1 m m      6231 Apr 11 05:21 heartbeat.json
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m        27 Apr 11 05:22 wrapper_checkpoint.txt
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m      8192 Apr 11 05:22 boinc_mmap_file
[2026-04-11 05:22:44] -rw------- 1 m m        95 Apr 11 05:22 pilot_heartbeat.json
[2026-04-11 05:22:44] -rw------- 1 m m      5008 Apr 11 05:22 pilotlog.txt
[2026-04-11 05:22:44] -rw------- 1 m m    907300 Apr 11 05:22 log.49263208._032490.job.log.1
[2026-04-11 05:22:44] -rw------- 1 m m       357 Apr 11 05:22 output.list
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m       410 Apr 11 05:22 runtime_log
[2026-04-11 05:22:44] -rw------- 1 m m   1198080 Apr 11 05:22 result.tar.gz
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m      8510 Apr 11 05:22 runtime_log.err
[2026-04-11 05:22:44] -rw------- 1 m m       642 Apr 11 05:22 96d3ae342b71.diag
[2026-04-11 05:22:44] -rw-rw-r-- 1 m m     20822 Apr 11 05:22 stderr.txt
[2026-04-11 05:22:44] HITS file was successfully produced:
[2026-04-11 05:22:44] -rw------- 1 m m 193339670 Apr 11 05:21 shared/HITS.pool.root.1
[2026-04-11 05:22:44]  *** Contents of shared directory: ***
[2026-04-11 05:22:44] total 409384
[2026-04-11 05:22:44] -rw-r--r-- 2 m m     15665 Apr 11 02:40 start_atlas.sh
[2026-04-11 05:22:44] -rw-r--r-- 2 m m    656928 Apr 11 02:40 input.tar.gz
[2026-04-11 05:22:44] -rw-r--r-- 2 m m 223979863 Apr 11 02:40 ATLAS.root_0
[2026-04-11 05:22:44] -rw------- 1 m m 193339670 Apr 11 05:21 HITS.pool.root.1
[2026-04-11 05:22:44] -rw------- 1 m m   1198080 Apr 11 05:22 result.tar.gz
05:22:46 (4175): run_atlas exited; CPU time 36758.514045
05:22:46 (4175): called boinc_finish(0)

</stderr_txt>
]]>

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