Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:54:51 (3953582): wrapper (7.7.26015): starting
12:54:51 (3953582): wrapper: running run_atlas (--nthreads 2)
[2026-04-11 12:54:51] Arguments: --nthreads 2
[2026-04-11 12:54:51] Threads: 2
[2026-04-11 12:54:51] Checking for CVMFS
[2026-04-11 12:54:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-11 12:54:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-11 12:54:51] Running cvmfs_config stat atlas.cern.ch
[2026-04-11 12:54:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-11 12:54:51] 2.9.2.0 3735197 2104 55000 158341 1 50 19922015 36864001 0 130560 0 891343 99.983 83431 17785 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-04-11 12:54:51] CVMFS is ok
[2026-04-11 12:54:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-11 12:54:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-11 12:54:51] Further information can be found at the LHC@home message board.
[2026-04-11 12:54:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-11 12:54:51] Checking for apptainer binary...
[2026-04-11 12:54:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-11 12:54:51] Running /usr/bin/apptainer --version
[2026-04-11 12:54:51] apptainer version 1.4.1-1.1
[2026-04-11 12:54:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-11 12:54:51] magicA244
[2026-04-11 12:54:51] apptainer works
[2026-04-11 12:54:51] Set ATHENA_PROC_NUMBER=2
[2026-04-11 12:54:51] Set ATHENA_CORE_NUMBER=2
[2026-04-11 12:54:51] Starting ATLAS job with PandaID=7085602718
[2026-04-11 12:54:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-11 15:03:17]  *** The last 200 lines of the pilot log: ***
[2026-04-11 15:03:17] 2026-04-11 13:02:29,824 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,824 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,824 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,824 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,824 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,824 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,825 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,825 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,825 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-11 15:03:17] 2026-04-11 13:02:29,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,825 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-11 15:03:17] 2026-04-11 13:02:29,825 | INFO     | job 7085602718 has completed (purged errors)
[2026-04-11 15:03:17] 2026-04-11 13:02:29,825 | INFO     | overall cleanup function is called
[2026-04-11 15:03:17] 2026-04-11 13:02:30,830 | INFO     | --- collectZombieJob: --- 10, [3962021]
[2026-04-11 15:03:17] 2026-04-11 13:02:30,830 | INFO     | zombie collector waiting for pid 3962021
[2026-04-11 15:03:17] 2026-04-11 13:02:30,830 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-11 15:03:17] 2026-04-11 13:02:30,830 | INFO     | collected zombie processes
[2026-04-11 15:03:17] 2026-04-11 13:02:30,830 | INFO     | will attempt to kill all subprocesses of pid=3962021
[2026-04-11 15:03:17] 2026-04-11 13:02:30,857 | INFO     | process IDs to be killed: [3962021] (in reverse order)
[2026-04-11 15:03:17] 2026-04-11 13:02:30,880 | WARNING  | found no corresponding commands to process id(s)
[2026-04-11 15:03:17] 2026-04-11 13:02:30,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-11 15:03:17] 2026-04-11 13:02:30,881 | INFO     | did not find any defunct processes belonging to 3962021
[2026-04-11 15:03:17] 2026-04-11 13:02:30,881 | INFO     | did not find any defunct processes belonging to 3962021
[2026-04-11 15:03:17] 2026-04-11 13:02:30,881 | INFO     | Ready for new job
[2026-04-11 15:03:17] 2026-04-11 13:02:30,882 | INFO     | **************************************
[2026-04-11 15:03:17] 2026-04-11 13:02:30,882 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-11 15:03:17] 2026-04-11 13:02:30,882 | INFO     | **************************************
[2026-04-11 15:03:17] 2026-04-11 13:02:30,882 | INFO     | 
[2026-04-11 15:03:17] 2026-04-11 13:02:30,882 | INFO     | architecture information:
[2026-04-11 15:03:17] 2026-04-11 13:02:30,882 | INFO     | executing command: cat /etc/os-release
[2026-04-11 15:03:17] 2026-04-11 13:02:30,892 | INFO     | cat /etc/os-release:
[2026-04-11 15:03:17] NAME="CentOS Linux"
[2026-04-11 15:03:17] VERSION="7 (Core)"
[2026-04-11 15:03:17] ID="centos"
[2026-04-11 15:03:17] ID_LIKE="rhel fedora"
[2026-04-11 15:03:17] VERSION_ID="7"
[2026-04-11 15:03:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-11 15:03:17] ANSI_COLOR="0;31"
[2026-04-11 15:03:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-11 15:03:17] HOME_URL="https://www.centos.org/"
[2026-04-11 15:03:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-11 15:03:17] 
[2026-04-11 15:03:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-11 15:03:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-11 15:03:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-11 15:03:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-11 15:03:17] 
[2026-04-11 15:03:17] 2026-04-11 13:02:30,892 | INFO     | **************************************
[2026-04-11 15:03:17] 2026-04-11 13:02:31,395 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-04-11 15:03:17] 2026-04-11 13:02:31,405 | INFO     | sufficient remaining disk space (504275927040 B)
[2026-04-11 15:03:17] 2026-04-11 13:02:31,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-11 15:03:17] 2026-04-11 13:02:31,405 | INFO     | current server update state: UPDATING_FINAL
[2026-04-11 15:03:17] 2026-04-11 13:02:31,405 | INFO     | update_server=False
[2026-04-11 15:03:17] 2026-04-11 13:02:31,405 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-11 15:03:17] 2026-04-11 13:02:31,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-11 15:03:17] 2026-04-11 13:02:31,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-11 15:03:17] 2026-04-11 13:02:31,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-11 15:03:17] 2026-04-11 13:02:31,406 | INFO     | aborting loop
[2026-04-11 15:03:17] 2026-04-11 13:02:31,837 | INFO     | all job control threads have been joined
[2026-04-11 15:03:17] 2026-04-11 13:02:32,085 | INFO     | all payload control threads have been joined
[2026-04-11 15:03:17] 2026-04-11 13:02:32,292 | INFO     | all data control threads have been joined
[2026-04-11 15:03:17] 2026-04-11 13:02:32,410 | INFO     | [job] retrieve thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:32,410 | INFO     | [job] queue monitor thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:32,411 | INFO     | [job] job monitor thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:32,462 | INFO     | [data] copytool_in thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:32,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-11 15:03:17] 2026-04-11 13:02:32,842 | INFO     | [job] control thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:32,867 | INFO     | [payload] failed_post thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:33,090 | INFO     | [payload] control thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:33,297 | INFO     | [data] control thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:33,430 | INFO     | [payload] execute_payloads thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:33,770 | INFO     | [job] validate thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:33,771 | INFO     | [job] create_data_payload thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:33,783 | INFO     | [payload] validate_post thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:33,827 | INFO     | [payload] validate_pre thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:34,760 | INFO     | [data] copytool_out thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:35,411 | INFO     | [data] queue_monitor thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:02:41,547 | INFO     | job.realtimelogging is not enabled
[2026-04-11 15:03:17] 2026-04-11 13:02:42,552 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-11 15:03:17] 2026-04-11 13:03:02,420 | INFO     | PID=3957611 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-11 15:03:17] 2026-04-11 13:03:02,420 | INFO     | found 0 job(s) in 20 queues
[2026-04-11 15:03:17] 2026-04-11 13:03:02,420 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-11 15:03:17] 2026-04-11 13:03:02,420 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-11 15:03:17] 2026-04-11 13:03:12,206 | INFO     | [monitor] cgroup control has ended
[2026-04-11 15:03:17] 2026-04-11 13:03:12,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119571818304)>', '<ExcThread(monitor, started 140118937560832)>']
[2026-04-11 15:03:17] 2026-04-11 13:03:13,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-11 15:03:17] 2026-04-11 13:03:13,475 | INFO     | [monitor] control thread has ended
[2026-04-11 15:03:17] 2026-04-11 13:03:17,852 | INFO     | all workflow threads have been joined
[2026-04-11 15:03:17] 2026-04-11 13:03:17,852 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-11 15:03:17] 2026-04-11 13:03:17,853 | INFO     | traces error code: 0
[2026-04-11 15:03:17] 2026-04-11 13:03:17,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-11 15:03:17] 2026-04-11 13:03:17,899 [wrapper] ==== pilot stdout END ====
[2026-04-11 15:03:17] 2026-04-11 13:03:17,901 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-11 15:03:17] 2026-04-11 13:03:17,904 [wrapper] pilotpid: 3957611
[2026-04-11 15:03:17] 2026-04-11 13:03:17,906 [wrapper] Pilot exit status: 0
[2026-04-11 15:03:17] 2026-04-11 13:03:17,913 [wrapper] pandaids: 7085602718
[2026-04-11 15:03:17] 2026-04-11 13:03:17,926 [wrapper] cleanup supervisor_pilot 3966967 3957612
[2026-04-11 15:03:17] 2026-04-11 13:03:17,928 [wrapper] Test setup, not cleaning
[2026-04-11 15:03:17] 2026-04-11 13:03:17,930 [wrapper] apfmon messages muted
[2026-04-11 15:03:17] 2026-04-11 13:03:17,933 [wrapper] ==== wrapper stdout END ====
[2026-04-11 15:03:17] 2026-04-11 13:03:17,935 [wrapper] ==== wrapper stderr END ====
[2026-04-11 15:03:17]  *** Error codes and diagnostics ***
[2026-04-11 15:03:17]     "exeErrorCode": 0,
[2026-04-11 15:03:17]     "pilotErrorCode": 0,
[2026-04-11 15:03:17]  *** Listing of results directory ***
[2026-04-11 15:03:17] total 411108
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc    644190 Apr 11 01:45 pilot3.tar.gz
[2026-04-11 15:03:17] -rwx------ 1 boinc boinc     36322 Apr 11 01:47 runpilot2-wrapper.sh
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc      5094 Apr 11 01:50 queuedata.json
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc       100 Apr 11 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-11 15:03:17] -rwxr-xr-x 1 boinc boinc      7986 Apr 11 12:54 run_atlas
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc       105 Apr 11 12:54 job.xml
[2026-04-11 15:03:17] -rw-r--r-- 2 boinc boinc 223455744 Apr 11 12:54 EVNT.49263198._000899.pool.root.1
[2026-04-11 15:03:17] -rw-r--r-- 2 boinc boinc    656931 Apr 11 12:54 input.tar.gz
[2026-04-11 15:03:17] -rw-r--r-- 2 boinc boinc     15665 Apr 11 12:54 start_atlas.sh
[2026-04-11 15:03:17] drwxrwx--x 2 boinc boinc      4096 Apr 11 12:54 shared
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc         0 Apr 11 12:54 boinc_setup_complete
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc      6124 Apr 11 12:54 init_data.xml
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc         0 Apr 11 12:54 boinc_lockfile
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc      2575 Apr 11 12:54 pandaJob.out
[2026-04-11 15:03:17] -rw------- 1 boinc boinc    997836 Apr 11 12:54 agis_schedconf.cvmfs.json
[2026-04-11 15:03:17] -rw------- 1 boinc boinc   1511579 Apr 11 12:54 agis_ddmendpoints.agis.ALL.json
[2026-04-11 15:03:17] -rw------- 1 boinc boinc       422 Apr 11 12:55 workernode_map.json
[2026-04-11 15:03:17] drwx------ 5 boinc boinc      4096 Apr 11 12:55 pilot3
[2026-04-11 15:03:17] -rw------- 1 boinc boinc 191525922 Apr 11 15:02 HITS.49263200._039869.pool.root.1
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc       487 Apr 11 15:02 boinc_task_state.xml
[2026-04-11 15:03:17] -rw------- 1 boinc boinc      1017 Apr 11 15:02 memory_monitor_summary.json
[2026-04-11 15:03:17] -rw------- 1 boinc boinc    243379 Apr 11 15:02 log.49263200._039869.job.log.tgz.1
[2026-04-11 15:03:17] -rw------- 1 boinc boinc      6323 Apr 11 15:02 heartbeat_new.json
[2026-04-11 15:03:17] -rw------- 1 boinc boinc      6214 Apr 11 15:02 heartbeat.json
[2026-04-11 15:03:17] -rw------- 1 boinc boinc        95 Apr 11 15:02 pilot_heartbeat.json
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc      8192 Apr 11 15:02 boinc_mmap_file
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc        27 Apr 11 15:03 wrapper_checkpoint.txt
[2026-04-11 15:03:17] -rw------- 1 boinc boinc      4819 Apr 11 15:03 pilotlog.txt
[2026-04-11 15:03:17] -rw------- 1 boinc boinc    727886 Apr 11 15:03 log.49263200._039869.job.log.1
[2026-04-11 15:03:17] -rw------- 1 boinc boinc       357 Apr 11 15:03 output.list
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc       410 Apr 11 15:03 runtime_log
[2026-04-11 15:03:17] -rw------- 1 boinc boinc    993280 Apr 11 15:03 result.tar.gz
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc      8533 Apr 11 15:03 runtime_log.err
[2026-04-11 15:03:17] -rw------- 1 boinc boinc       662 Apr 11 15:03 8c1e31ccf528.diag
[2026-04-11 15:03:17] -rw-r--r-- 1 boinc boinc     12016 Apr 11 15:03 stderr.txt
[2026-04-11 15:03:17] HITS file was successfully produced:
[2026-04-11 15:03:17] -rw------- 1 boinc boinc 191525922 Apr 11 15:02 shared/HITS.pool.root.1
[2026-04-11 15:03:17]  *** Contents of shared directory: ***
[2026-04-11 15:03:17] total 406896
[2026-04-11 15:03:17] -rw-r--r-- 2 boinc boinc 223455744 Apr 11 12:54 ATLAS.root_0
[2026-04-11 15:03:17] -rw-r--r-- 2 boinc boinc    656931 Apr 11 12:54 input.tar.gz
[2026-04-11 15:03:17] -rw-r--r-- 2 boinc boinc     15665 Apr 11 12:54 start_atlas.sh
[2026-04-11 15:03:17] -rw------- 1 boinc boinc 191525922 Apr 11 15:02 HITS.pool.root.1
[2026-04-11 15:03:17] -rw------- 1 boinc boinc    993280 Apr 11 15:03 result.tar.gz
15:03:19 (3953582): run_atlas exited; CPU time 14694.636964
15:03:19 (3953582): called boinc_finish(0)

</stderr_txt>
]]>

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