Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
09:40:43 (3759483): wrapper (7.7.26015): starting
09:40:43 (3759483): wrapper: running run_atlas (--nthreads 4)
[2026-04-12 09:40:43] Arguments: --nthreads 4
[2026-04-12 09:40:43] Threads: 4
[2026-04-12 09:40:43] Checking for CVMFS
[2026-04-12 09:40:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-12 09:40:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-12 09:40:43] Running cvmfs_config stat atlas.cern.ch
[2026-04-12 09:40:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-12 09:40:43] 2.13.3.0 11582 79676 47500 158370 1 50 25807091 33554433 0 130560 0 35401313 99.974 3073013 316 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-04-12 09:40:43] CVMFS is ok
[2026-04-12 09:40:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-12 09:40:43] Checking for apptainer binary...
[2026-04-12 09:40:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-12 09:40:43] Running /usr/bin/apptainer --version
[2026-04-12 09:40:43] apptainer version 1.4.5
[2026-04-12 09:40:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-12 09:40:43] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-04-12 09:40:43] apptainer works
[2026-04-12 09:40:43] Set ATHENA_PROC_NUMBER=4
[2026-04-12 09:40:43] Set ATHENA_CORE_NUMBER=4
[2026-04-12 09:40:43] Starting ATLAS job with PandaID=7085550776
[2026-04-12 09:40:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-04-12 10:39:02]  *** The last 200 lines of the pilot log: ***
[2026-04-12 10:39:02]  domain=
[2026-04-12 10:39:02]  filesize=226141
[2026-04-12 10:39:02]  filetype=log
[2026-04-12 10:39:02]  guid=b5980696-a9f6-43f9-8574-ad64c0f419ff
[2026-04-12 10:39:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-04-12 10:39:02]  is_altstaged=None
[2026-04-12 10:39:02]  is_tar=False
[2026-04-12 10:39:02]  lfn=log.49263191._041469.job.log.tgz.1
[2026-04-12 10:39:02]  mtime=0
[2026-04-12 10:39:02]  protocol_id=None
[2026-04-12 10:39:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-04-12 10:39:02]  replicas=None
[2026-04-12 10:39:02]  scope=mc23_13p6TeV
[2026-04-12 10:39:02]  status=None
[2026-04-12 10:39:02]  status_code=0
[2026-04-12 10:39:02]  storage_token=
[2026-04-12 10:39:02]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7085550776/log.49263191._041469.job.log.tgz.1
[2026-04-12 10:39:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/06/log.49263191._041469.job.log.tgz.1
[2026-04-12 10:39:02]  workdir=None
[2026-04-12 10:39:02] ]
[2026-04-12 10:39:02] 2026-04-12 07:37:58,163 | INFO     | transferring file log.49263191._041469.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7085550776/log.49263191._041469.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-04-12 10:39:02] 2026-04-12 07:37:58,163 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7085550776/log.49263191._041469.job.log.tgz.1 /home/ek/BOINC/slots/0/log.49263191._041469.job
[2026-04-12 10:39:02] 2026-04-12 07:37:58,171 | INFO     | adding to output.list: log.49263191._041469.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/06/log.49263191._041469.job.log.tg
[2026-04-12 10:39:02] 2026-04-12 07:37:58,171 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-04-12 10:39:02] 2026-04-12 07:37:58,171 | INFO     | summary of transferred files:
[2026-04-12 10:39:02] 2026-04-12 07:37:58,171 | INFO     |  -- lfn=log.49263191._041469.job.log.tgz.1, status_code=0, status=transferred
[2026-04-12 10:39:02] 2026-04-12 07:37:58,171 | INFO     | stage-out finished correctly
[2026-04-12 10:39:02] 2026-04-12 07:37:59,288 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-04-12 10:39:02] 2026-04-12 07:38:01,389 | INFO     | job 7085550776 has state=finished
[2026-04-12 10:39:02] 2026-04-12 07:38:01,389 | INFO     | preparing for final server update for job 7085550776 in state='finished'
[2026-04-12 10:39:02] 2026-04-12 07:38:01,389 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7085550776/jobReport.json
[2026-04-12 10:39:02] 2026-04-12 07:38:01,390 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-04-12 10:39:02] 2026-04-12 07:38:01,390 | INFO     | this job has now completed (state=finished)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,390 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,390 | INFO     | log transfer has been attempted: DONE
[2026-04-12 10:39:02] 2026-04-12 07:38:01,391 | INFO     | job 7085550776 has finished - writing final server update
[2026-04-12 10:39:02] 2026-04-12 07:38:01,391 | INFO     | total number of processed events: 400 (read)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,393 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7085550776/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,393 | INFO     | extracted standard info from prmon json
[2026-04-12 10:39:02] 2026-04-12 07:38:01,393 | INFO     | extracted standard memory fields from prmon json
[2026-04-12 10:39:02] 2026-04-12 07:38:01,393 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-04-12 10:39:02] 2026-04-12 07:38:01,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | fitting pss+swap vs Time
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | sum of square deviations: 36465800.0
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | sum of deviations: -7357097943.000001
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | mean x (centered): 0.0
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | mean y: 2622136.612244898
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | intersect: 2622136.612244898
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | chi2: 0.09167456048290469
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | current memory leak: -201.75 B/s (using 49 data points, chi2=0.09)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,394 | INFO     | could have reported an average CPU frequency of 3116 MHz (5 samples)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | ..............................
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | . Timing measurements:
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | . get job = 0 s
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | . initial setup = 3 s
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | . payload setup = 3 s
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | . stage-in = 0 s
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | . payload execution = 3409 s
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | . stage-out = 0 s
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | . log creation = 0 s
[2026-04-12 10:39:02] 2026-04-12 07:38:01,395 | INFO     | ..............................
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | 
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | job summary report
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | --------------------------------------------------
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | PanDA job id: 7085550776
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | task id: 49263191
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | errors: (none)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | status: LOG_TRANSFER = DONE 
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | pilot state: finished 
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | transexitcode: 0
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | exeerrorcode: 0
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | exeerrordiag: 
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | exitcode: 0
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | exitmsg: OK
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | cpuconsumptiontime: 12962 s
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | nevents: 400
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | neventsw: 0
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | pid: 3768168
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | pgrp: 3768168
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | corecount: 4
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | event service: False
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | sizes: {0: 2281470, 11: 2281470, 3416: 2316203, 3417: 2316203, 3419: 2316429}
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | --------------------------------------------------
[2026-04-12 10:39:02] 2026-04-12 07:38:01,422 | INFO     | 
[2026-04-12 10:39:02] 2026-04-12 07:38:01,423 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-04-12 10:39:02] 2026-04-12 07:38:01,430 | INFO     | queue jobs had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue payloads had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue data_in had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue data_out had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue completed_jobids has 1 job(s)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | queue messages had 0 job(s) [purged]
[2026-04-12 10:39:02] 2026-04-12 07:38:01,431 | INFO     | job 7085550776 has completed (purged errors)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,432 | INFO     | overall cleanup function is called
[2026-04-12 10:39:02] 2026-04-12 07:38:01,454 | WARNING  | process 3768168 can no longer be monitored (due to stat problems) - aborting
[2026-04-12 10:39:02] 2026-04-12 07:38:01,514 | INFO     | using path: /home/ek/BOINC/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-04-12 10:39:02] 2026-04-12 07:38:01,606 | INFO     | number of running child processes to parent process 3768168: 1
[2026-04-12 10:39:02] 2026-04-12 07:38:01,606 | INFO     | maximum number of monitored processes: 6
[2026-04-12 10:39:02] 2026-04-12 07:38:01,606 | INFO     | aborting job monitoring since job object (job id=7085550776) has expired
[2026-04-12 10:39:02] 2026-04-12 07:38:02,434 | INFO     | --- collectZombieJob: --- 10, [3768168]
[2026-04-12 10:39:02] 2026-04-12 07:38:02,434 | INFO     | zombie collector waiting for pid 3768168
[2026-04-12 10:39:02] 2026-04-12 07:38:02,434 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-04-12 10:39:02] 2026-04-12 07:38:02,434 | INFO     | collected zombie processes
[2026-04-12 10:39:02] 2026-04-12 07:38:02,434 | INFO     | will attempt to kill all subprocesses of pid=3768168
[2026-04-12 10:39:02] 2026-04-12 07:38:02,528 | INFO     | process IDs to be killed: [3768168] (in reverse order)
[2026-04-12 10:39:02] 2026-04-12 07:38:02,561 | WARNING  | found no corresponding commands to process id(s)
[2026-04-12 10:39:02] 2026-04-12 07:38:02,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-04-12 10:39:02] 2026-04-12 07:38:02,563 | INFO     | did not find any defunct processes belonging to 3768168
[2026-04-12 10:39:02] 2026-04-12 07:38:02,566 | INFO     | did not find any defunct processes belonging to 3768168
[2026-04-12 10:39:02] 2026-04-12 07:38:02,566 | INFO     | Ready for new job
[2026-04-12 10:39:02] 2026-04-12 07:38:02,566 | INFO     | **************************************
[2026-04-12 10:39:02] 2026-04-12 07:38:02,566 | INFO     | ***  PanDA Pilot version 3.12.4.1  ***
[2026-04-12 10:39:02] 2026-04-12 07:38:02,566 | INFO     | **************************************
[2026-04-12 10:39:02] 2026-04-12 07:38:02,566 | INFO     | 
[2026-04-12 10:39:02] 2026-04-12 07:38:02,567 | INFO     | architecture information:
[2026-04-12 10:39:02] 2026-04-12 07:38:02,567 | INFO     | executing command: cat /etc/os-release
[2026-04-12 10:39:02] 2026-04-12 07:38:02,573 | INFO     | cat /etc/os-release:
[2026-04-12 10:39:02] NAME="CentOS Linux"
[2026-04-12 10:39:02] VERSION="7 (Core)"
[2026-04-12 10:39:02] ID="centos"
[2026-04-12 10:39:02] ID_LIKE="rhel fedora"
[2026-04-12 10:39:02] VERSION_ID="7"
[2026-04-12 10:39:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-04-12 10:39:02] ANSI_COLOR="0;31"
[2026-04-12 10:39:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-04-12 10:39:02] HOME_URL="https://www.centos.org/"
[2026-04-12 10:39:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-04-12 10:39:02] 
[2026-04-12 10:39:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-04-12 10:39:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-04-12 10:39:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-04-12 10:39:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-04-12 10:39:02] 
[2026-04-12 10:39:02] 2026-04-12 07:38:02,573 | INFO     | **************************************
[2026-04-12 10:39:02] 2026-04-12 07:38:03,076 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-04-12 10:39:02] 2026-04-12 07:38:03,082 | INFO     | sufficient remaining disk space (60380151808 B)
[2026-04-12 10:39:02] 2026-04-12 07:38:03,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-04-12 10:39:02] 2026-04-12 07:38:03,083 | INFO     | current server update state: UPDATING_FINAL
[2026-04-12 10:39:02] 2026-04-12 07:38:03,083 | INFO     | update_server=False
[2026-04-12 10:39:02] 2026-04-12 07:38:03,083 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-04-12 10:39:02] 2026-04-12 07:38:03,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-04-12 10:39:02] 2026-04-12 07:38:03,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-04-12 10:39:02] 2026-04-12 07:38:03,083 | INFO     | aborting loop
[2026-04-12 10:39:02] 2026-04-12 07:38:03,516 | INFO     | all payload control threads have been joined
[2026-04-12 10:39:02] 2026-04-12 07:38:03,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-04-12 10:39:02] 2026-04-12 07:38:03,809 | INFO     | all data control threads have been joined
[2026-04-12 10:39:02] 2026-04-12 07:38:04,085 | INFO     | [job] queue monitor thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,087 | INFO     | [job] retrieve thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,088 | INFO     | [job] job monitor thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,511 | INFO     | [payload] failed_post thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,521 | INFO     | [payload] control thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,724 | INFO     | all job control threads have been joined
[2026-04-12 10:39:02] 2026-04-12 07:38:04,767 | INFO     | [job] create_data_payload thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,772 | INFO     | [job] validate thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,814 | INFO     | [data] control thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,830 | INFO     | [payload] execute_payloads thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,886 | INFO     | [payload] validate_pre thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:04,924 | INFO     | [data] copytool_in thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:05,258 | INFO     | [payload] validate_post thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:05,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-04-12 10:39:02] 2026-04-12 07:38:05,710 | INFO     | [data] copytool_out thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:05,730 | INFO     | [job] control thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:09,324 | INFO     | [data] queue_monitor thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:13,564 | INFO     | job.realtimelogging is not enabled
[2026-04-12 10:39:02] 2026-04-12 07:38:14,569 | INFO     | [payload] run_realtimelog thread has finished
[2026-04-12 10:39:02] 2026-04-12 07:38:33,025 | INFO     | PID=3763544 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-04-12 10:39:02] 2026-04-12 07:38:33,025 | INFO     | found 0 job(s) in 20 queues
[2026-04-12 10:39:02] 2026-04-12 07:38:33,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-04-12 10:39:02] 2026-04-12 07:38:33,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-04-12 10:39:02] 2026-04-12 07:38:55,391 | INFO     | [monitor] cgroup control has ended
[2026-04-12 10:39:02] 2026-04-12 07:38:56,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139669618476864)>', '<ExcThread(monitor, started 139668905518848)>']
[2026-04-12 10:39:02] 2026-04-12 07:38:57,123 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-04-12 10:39:02] 2026-04-12 07:38:57,123 | INFO     | [monitor] control thread has ended
[2026-04-12 10:39:02] 2026-04-12 07:39:01,992 | INFO     | all workflow threads have been joined
[2026-04-12 10:39:02] 2026-04-12 07:39:01,992 | INFO     | end of generic workflow (traces error code: 0)
[2026-04-12 10:39:02] 2026-04-12 07:39:01,992 | INFO     | traces error code: 0
[2026-04-12 10:39:02] 2026-04-12 07:39:01,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-04-12 10:39:02] 2026-04-12 07:39:02,034 [wrapper] ==== pilot stdout END ====
[2026-04-12 10:39:02] 2026-04-12 07:39:02,036 [wrapper] ==== wrapper stdout RESUME ====
[2026-04-12 10:39:02] 2026-04-12 07:39:02,038 [wrapper] pilotpid: 3763544
[2026-04-12 10:39:02] 2026-04-12 07:39:02,039 [wrapper] Pilot exit status: 0
[2026-04-12 10:39:02] 2026-04-12 07:39:02,044 [wrapper] pandaids: 7085550776
[2026-04-12 10:39:02] 2026-04-12 07:39:02,066 [wrapper] cleanup supervisor_pilot 3803002 3763545
[2026-04-12 10:39:02] 2026-04-12 07:39:02,068 [wrapper] Test setup, not cleaning
[2026-04-12 10:39:02] 2026-04-12 07:39:02,069 [wrapper] apfmon messages muted
[2026-04-12 10:39:02] 2026-04-12 07:39:02,070 [wrapper] ==== wrapper stdout END ====
[2026-04-12 10:39:02] 2026-04-12 07:39:02,072 [wrapper] ==== wrapper stderr END ====
[2026-04-12 10:39:02]  *** Error codes and diagnostics ***
[2026-04-12 10:39:02]     "exeErrorCode": 0,
[2026-04-12 10:39:02]     "pilotErrorCode": 0,
[2026-04-12 10:39:02]  *** Listing of results directory ***
[2026-04-12 10:39:02] total 415756
[2026-04-12 10:39:02] -rw-r--r-- 1 ek ek    644190 Apr 10 22:40 pilot3.tar.gz
[2026-04-12 10:39:02] -rwx------ 1 ek ek     36322 Apr 10 22:41 runpilot2-wrapper.sh
[2026-04-12 10:39:02] -rw-r--r-- 1 ek ek      5094 Apr 10 22:43 queuedata.json
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek       100 Apr 12 09:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-04-12 10:39:02] -rwxr-xr-x 1 ek ek      7986 Apr 12 09:40 run_atlas
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek       105 Apr 12 09:40 job.xml
[2026-04-12 10:39:02] -rw-r--r-- 2 ek ek 224878427 Apr 12 09:40 EVNT.49263189._000844.pool.root.1
[2026-04-12 10:39:02] -rw-r--r-- 2 ek ek    656934 Apr 12 09:40 input.tar.gz
[2026-04-12 10:39:02] -rw-r--r-- 2 ek ek     15665 Apr 12 09:40 start_atlas.sh
[2026-04-12 10:39:02] drwxrwx--x 2 ek ek      4096 Apr 12 09:40 shared
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek         0 Apr 12 09:40 boinc_setup_complete
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek      9756 Apr 12 09:40 init_data.xml
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek         0 Apr 12 09:40 boinc_lockfile
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek      2577 Apr 12 09:40 pandaJob.out
[2026-04-12 10:39:02] -rw------- 1 ek ek        50 Apr 12 09:40 setup.sh.local
[2026-04-12 10:39:02] -rw------- 1 ek ek    997759 Apr 12 09:40 agis_schedconf.cvmfs.json
[2026-04-12 10:39:02] -rw------- 1 ek ek   1511579 Apr 12 09:40 agis_ddmendpoints.agis.ALL.json
[2026-04-12 10:39:02] -rw------- 1 ek ek       433 Apr 12 09:40 workernode_map.json
[2026-04-12 10:39:02] drwx------ 5 ek ek      4096 Apr 12 09:40 pilot3
[2026-04-12 10:39:02] -rw------- 1 ek ek 195634403 Apr 12 10:37 HITS.49263191._041469.pool.root.1
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek       487 Apr 12 10:37 boinc_task_state.xml
[2026-04-12 10:39:02] -rw------- 1 ek ek      1016 Apr 12 10:37 memory_monitor_summary.json
[2026-04-12 10:39:02] -rw------- 1 ek ek    226141 Apr 12 10:37 log.49263191._041469.job.log.tgz.1
[2026-04-12 10:39:02] -rw------- 1 ek ek      6332 Apr 12 10:38 heartbeat_new.json
[2026-04-12 10:39:02] -rw------- 1 ek ek      6223 Apr 12 10:38 heartbeat.json
[2026-04-12 10:39:02] -rw------- 1 ek ek        95 Apr 12 10:38 pilot_heartbeat.json
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek      8192 Apr 12 10:38 boinc_mmap_file
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek        27 Apr 12 10:38 wrapper_checkpoint.txt
[2026-04-12 10:39:02] -rw------- 1 ek ek      4815 Apr 12 10:39 pilotlog.txt
[2026-04-12 10:39:02] -rw------- 1 ek ek    351194 Apr 12 10:39 log.49263191._041469.job.log.1
[2026-04-12 10:39:02] -rw------- 1 ek ek       357 Apr 12 10:39 output.list
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek       410 Apr 12 10:39 runtime_log
[2026-04-12 10:39:02] -rw------- 1 ek ek    593920 Apr 12 10:39 result.tar.gz
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek      9123 Apr 12 10:39 runtime_log.err
[2026-04-12 10:39:02] -rw------- 1 ek ek       660 Apr 12 10:39 5271aec420ed.diag
[2026-04-12 10:39:02] -rw-rw-r-- 1 ek ek     20876 Apr 12 10:39 stderr.txt
[2026-04-12 10:39:02] HITS file was successfully produced:
[2026-04-12 10:39:02] -rw------- 1 ek ek 195634403 Apr 12 10:37 shared/HITS.pool.root.1
[2026-04-12 10:39:02]  *** Contents of shared directory: ***
[2026-04-12 10:39:02] total 411908
[2026-04-12 10:39:02] -rw-r--r-- 2 ek ek 224878427 Apr 12 09:40 ATLAS.root_0
[2026-04-12 10:39:02] -rw-r--r-- 2 ek ek    656934 Apr 12 09:40 input.tar.gz
[2026-04-12 10:39:02] -rw-r--r-- 2 ek ek     15665 Apr 12 09:40 start_atlas.sh
[2026-04-12 10:39:02] -rw------- 1 ek ek 195634403 Apr 12 10:37 HITS.pool.root.1
[2026-04-12 10:39:02] -rw------- 1 ek ek    593920 Apr 12 10:39 result.tar.gz
10:39:03 (3759483): run_atlas exited; CPU time 12994.312002
10:39:03 (3759483): called boinc_finish(0)

</stderr_txt>
]]>

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